Wall clock time and date at job start Tue Mar 31 2020 15:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86791 * 119.99716 * 2 1 4 4 H 1.48498 * 109.47160 * 269.99272 * 3 2 1 5 5 H 1.48497 * 109.47308 * 30.00048 * 3 2 1 6 6 H 1.48506 * 109.47035 * 149.99705 * 3 2 1 7 7 C 1.38801 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99974 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00099 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47306 * 179.97438 * 10 9 7 12 12 N 1.30948 * 126.41300 * 90.00366 * 11 10 9 13 13 C 1.35323 * 105.57921 * 180.02562 * 12 11 10 14 14 C 1.48056 * 126.43498 * 179.97438 * 13 12 11 15 15 C 1.38449 * 120.21581 * 132.92362 * 14 13 12 16 16 C 1.38806 * 120.76935 * 179.97438 * 15 14 13 17 17 C 1.37842 * 120.93211 * 359.97438 * 16 15 14 18 18 O 1.35711 * 120.08598 * 179.97438 * 17 16 15 19 19 C 1.41061 * 119.82974 * 0.02562 * 17 16 15 20 20 C 1.40430 * 121.14616 * 179.97438 * 19 17 16 21 21 C 1.36184 * 119.66829 * 179.15621 * 20 19 17 22 22 C 1.39291 * 120.92677 * 0.87308 * 21 20 19 23 23 C 1.36214 * 120.92794 * 359.40032 * 22 21 20 24 24 C 1.40265 * 119.68971 * 0.02842 * 23 22 21 25 25 N 1.30934 * 107.12620 * 359.97438 * 13 12 11 26 26 O 1.21284 * 110.06775 * 0.02562 * 25 13 12 27 27 H 0.96995 * 120.00427 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46989 * 60.00374 * 10 9 7 29 29 H 1.08996 * 109.47441 * 300.00179 * 10 9 7 30 30 H 1.07996 * 119.61773 * 359.95435 * 15 14 13 31 31 H 1.07997 * 119.53519 * 179.97438 * 16 15 14 32 32 H 0.96708 * 113.99524 * 90.00257 * 18 17 16 33 33 H 1.08007 * 120.16475 * 359.97156 * 20 19 17 34 34 H 1.08008 * 119.53283 * 180.29782 * 21 20 19 35 35 H 1.07997 * 119.53521 * 179.43076 * 22 21 20 36 36 H 1.07996 * 120.15603 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3028 0.0012 12 7 1.7146 -6.0311 -1.0523 13 6 1.2706 -7.2151 -0.5705 14 6 0.8330 -8.3816 -1.3705 15 6 1.2929 -9.6504 -1.0616 16 6 0.8897 -10.7520 -1.8036 17 6 0.0218 -10.6120 -2.8654 18 8 -0.3607 -11.7008 -3.5795 19 6 -0.4668 -9.3339 -3.2084 20 6 -1.3515 -9.1595 -4.2849 21 6 -1.8181 -7.9143 -4.5790 22 6 -1.4161 -6.8057 -3.8377 23 6 -0.5548 -6.9384 -2.7907 24 6 -0.0634 -8.2077 -2.4520 25 7 1.3009 -7.1355 0.7361 26 8 1.7092 -6.0456 1.0772 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8906 29 1 3.1245 -3.7314 -0.8894 30 1 1.9735 -9.7846 -0.2340 31 1 1.2611 -11.7327 -1.5454 32 1 -1.1572 -12.1328 -3.2414 33 1 -1.6707 -10.0104 -4.8685 34 1 -2.5022 -7.7833 -5.4044 35 1 -1.7930 -5.8272 -4.0963 36 1 -0.2518 -6.0704 -2.2242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350576784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:23 Heat of formation + Delta-G solvation = 68.811349 kcal Electronic energy + Delta-G solvation = -23645.646414 eV Core-core repulsion = 19996.456687 eV Total energy + Delta-G solvation = -3649.189727 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.27702 -40.76211 -37.97153 -36.62145 -35.34621 -33.29054 -32.58927 -31.72425 -30.60228 -29.17745 -28.32429 -25.66089 -24.58396 -23.48277 -23.24743 -22.56815 -20.82931 -18.73344 -18.19942 -17.88323 -17.65703 -17.16271 -16.68435 -16.11249 -15.24844 -14.93986 -14.78020 -14.57380 -14.25334 -14.04612 -13.99472 -13.49404 -13.26283 -13.15151 -12.93175 -12.58531 -12.06645 -11.95329 -11.72990 -11.32291 -11.22208 -11.18731 -11.13611 -10.99119 -10.79881 -10.71110 -10.35626 -9.88974 -9.45717 -9.21206 -8.86400 -8.59687 -7.88557 -6.77684 -6.38837 -4.13725 0.09980 0.80164 1.27679 1.70791 2.30876 2.77177 2.97770 3.15434 3.18156 3.23110 3.36475 3.55043 3.71080 3.91839 4.04030 4.28569 4.49958 4.62544 4.81994 4.87045 4.98915 5.01555 5.13675 5.20765 5.27584 5.35234 5.45895 5.58245 5.68229 5.76028 5.87403 5.97101 6.00132 6.08155 6.10028 6.17430 6.36181 6.46754 6.51741 6.81200 7.28666 7.45848 8.20061 8.34021 9.07383 10.69128 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.002832 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.429338 B = 9883.435588 C =10992.486707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.924 3.076 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.081 0.919 9 S -0.081 6.081 10 C -0.045 4.045 11 C 0.230 3.770 12 N -0.470 5.470 13 C 0.205 3.795 14 C -0.004 4.004 15 C -0.066 4.066 16 C -0.147 4.147 17 C 0.132 3.868 18 O -0.491 6.491 19 C -0.075 4.075 20 C -0.105 4.105 21 C -0.112 4.112 22 C -0.107 4.107 23 C -0.095 4.095 24 C -0.010 4.010 25 N -0.378 5.378 26 O 0.083 5.917 27 H 0.271 0.729 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.392 0.608 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.355 -19.553 -5.392 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.750 3.250 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.674 4.674 8 H 0.099 0.901 9 S 0.145 5.855 10 C -0.193 4.193 11 C 0.010 3.990 12 N -0.204 5.204 13 C -0.066 4.066 14 C -0.006 4.006 15 C -0.086 4.086 16 C -0.165 4.165 17 C 0.086 3.914 18 O -0.302 6.302 19 C -0.076 4.076 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.113 4.113 24 C -0.012 4.012 25 N -0.085 5.085 26 O 0.022 5.978 27 H 0.081 0.919 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.249 0.751 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.407 -20.234 -5.616 21.136 hybrid contribution 1.465 1.338 0.325 2.011 sum -0.942 -18.896 -5.291 19.645 Atomic orbital electron populations 1.69992 1.06019 1.27870 1.46308 1.25024 0.95126 0.99237 0.94105 0.86070 0.79409 0.80989 0.78521 1.20102 1.20670 1.19451 1.22699 0.94872 0.89977 1.59842 0.90128 1.85175 1.05092 0.98282 1.96979 1.22023 1.04507 0.85667 1.07126 1.28227 0.93893 0.96873 0.79995 1.72183 1.18422 1.01729 1.28103 1.23663 1.01126 0.94079 0.87705 1.17271 0.99082 0.89089 0.95120 1.20920 0.98494 0.90365 0.98838 1.21149 1.00524 0.99514 0.95331 1.18482 0.96155 0.85646 0.91071 1.84747 1.49050 1.41430 1.54983 1.18191 0.99568 0.92258 0.97540 1.20877 0.96983 0.98025 0.96400 1.20945 0.99724 0.92584 0.99714 1.21027 0.97054 0.99296 0.95156 1.21317 0.95928 0.96505 0.97512 1.17714 0.95902 0.93519 0.94029 1.74991 1.18143 1.00706 1.14660 1.85284 1.58885 1.17817 1.35769 0.91935 0.87761 0.86951 0.84936 0.84567 0.75097 0.85096 0.85650 0.85234 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.55 13.22 55.49 0.73 -23.81 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.53 -13.84 9.50 30.94 0.29 -13.55 16 8 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.08 -1.97 21.42 -107.50 -2.30 -4.27 16 10 C -0.04 -0.83 6.30 36.01 0.23 -0.60 16 11 C 0.23 4.20 7.75 -12.98 -0.10 4.10 16 12 N -0.47 -8.67 10.02 -9.86 -0.10 -8.77 16 13 C 0.20 3.53 6.83 -156.05 -1.07 2.47 16 14 C 0.00 -0.06 5.91 -104.53 -0.62 -0.68 16 15 C -0.07 -0.81 9.72 -39.29 -0.38 -1.19 16 16 C -0.15 -1.52 9.92 -39.52 -0.39 -1.91 16 17 C 0.13 1.42 6.71 -38.66 -0.26 1.16 16 18 O -0.49 -4.10 12.70 -18.84 -0.24 -4.34 16 19 C -0.07 -0.94 5.75 -106.75 -0.61 -1.55 16 20 C -0.10 -1.13 9.56 -39.50 -0.38 -1.51 16 21 C -0.11 -1.20 9.95 -39.93 -0.40 -1.60 16 22 C -0.11 -1.37 9.95 -39.92 -0.40 -1.77 16 23 C -0.09 -1.44 9.27 -39.55 -0.37 -1.81 16 24 C -0.01 -0.15 5.76 -106.62 -0.61 -0.77 16 25 N -0.38 -6.66 12.21 30.99 0.38 -6.28 16 26 O 0.08 1.49 11.29 18.01 0.20 1.69 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 29 H 0.11 1.99 8.14 -51.92 -0.42 1.57 16 30 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.39 1.35 9.06 45.56 0.41 1.76 16 33 H 0.13 1.10 7.60 -52.48 -0.40 0.70 16 34 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.14 2.42 6.11 -52.49 -0.32 2.10 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -31.42 337.50 -8.81 -40.23 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -2.39 Total: 2.51 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -5.16 Total: -17.30 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 1.01 Total: -38.87 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: -0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -2.30 Total: -4.27 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.42 -8.81 -40.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350576784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.037 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds