Wall clock time and date at job start Tue Mar 31 2020 15:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86791 * 119.99716 * 2 1 4 4 H 1.48498 * 109.47160 * 269.99272 * 3 2 1 5 5 H 1.48497 * 109.47308 * 30.00048 * 3 2 1 6 6 H 1.48506 * 109.47035 * 149.99705 * 3 2 1 7 7 C 1.38801 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99974 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00099 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47306 * 179.97438 * 10 9 7 12 12 N 1.30948 * 126.41300 * 90.00366 * 11 10 9 13 13 C 1.35323 * 105.57921 * 180.02562 * 12 11 10 14 14 C 1.48056 * 126.43498 * 179.97438 * 13 12 11 15 15 C 1.38449 * 120.21581 * 132.92362 * 14 13 12 16 16 C 1.38806 * 120.76935 * 179.97438 * 15 14 13 17 17 C 1.37842 * 120.93211 * 359.97438 * 16 15 14 18 18 O 1.35711 * 120.08598 * 179.97438 * 17 16 15 19 19 C 1.41061 * 119.82974 * 0.02562 * 17 16 15 20 20 C 1.40430 * 121.14616 * 179.97438 * 19 17 16 21 21 C 1.36184 * 119.66829 * 179.15621 * 20 19 17 22 22 C 1.39291 * 120.92677 * 0.87308 * 21 20 19 23 23 C 1.36214 * 120.92794 * 359.40032 * 22 21 20 24 24 C 1.40265 * 119.68971 * 0.02842 * 23 22 21 25 25 N 1.30934 * 107.12620 * 359.97438 * 13 12 11 26 26 O 1.21284 * 110.06775 * 0.02562 * 25 13 12 27 27 H 0.96995 * 120.00427 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46989 * 60.00374 * 10 9 7 29 29 H 1.08996 * 109.47441 * 300.00179 * 10 9 7 30 30 H 1.07996 * 119.61773 * 359.95435 * 15 14 13 31 31 H 1.07997 * 119.53519 * 179.97438 * 16 15 14 32 32 H 0.96708 * 113.99524 * 90.00257 * 18 17 16 33 33 H 1.08007 * 120.16475 * 359.97156 * 20 19 17 34 34 H 1.08008 * 119.53283 * 180.29782 * 21 20 19 35 35 H 1.07997 * 119.53521 * 179.43076 * 22 21 20 36 36 H 1.07996 * 120.15603 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3028 0.0012 12 7 1.7146 -6.0311 -1.0523 13 6 1.2706 -7.2151 -0.5705 14 6 0.8330 -8.3816 -1.3705 15 6 1.2929 -9.6504 -1.0616 16 6 0.8897 -10.7520 -1.8036 17 6 0.0218 -10.6120 -2.8654 18 8 -0.3607 -11.7008 -3.5795 19 6 -0.4668 -9.3339 -3.2084 20 6 -1.3515 -9.1595 -4.2849 21 6 -1.8181 -7.9143 -4.5790 22 6 -1.4161 -6.8057 -3.8377 23 6 -0.5548 -6.9384 -2.7907 24 6 -0.0634 -8.2077 -2.4520 25 7 1.3009 -7.1355 0.7361 26 8 1.7092 -6.0456 1.0772 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8906 29 1 3.1245 -3.7314 -0.8894 30 1 1.9735 -9.7846 -0.2340 31 1 1.2611 -11.7327 -1.5454 32 1 -1.1572 -12.1328 -3.2414 33 1 -1.6707 -10.0104 -4.8685 34 1 -2.5022 -7.7833 -5.4044 35 1 -1.7930 -5.8272 -4.0963 36 1 -0.2518 -6.0704 -2.2242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350576784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:23 Heat of formation + Delta-G solvation = 48.370562 kcal Electronic energy + Delta-G solvation = -23646.532793 eV Core-core repulsion = 19996.456687 eV Total energy + Delta-G solvation = -3650.076106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.66447 -41.66444 -38.76133 -37.68033 -36.57180 -34.68360 -34.53651 -32.71838 -31.51826 -30.36090 -29.61493 -27.69346 -25.73114 -24.58132 -24.21006 -23.74519 -21.96078 -19.96036 -19.56047 -19.25782 -18.86495 -18.30147 -17.65512 -17.13756 -16.89856 -16.39282 -16.15449 -15.74588 -15.64888 -15.01295 -14.95800 -14.80799 -14.56181 -14.39508 -14.03632 -13.59359 -13.47524 -13.20259 -13.04736 -12.89336 -12.82288 -12.67800 -12.37855 -12.24954 -12.05427 -11.93275 -11.52700 -11.20137 -11.15747 -10.74485 -10.41742 -9.78548 -8.83064 -8.76972 -8.39285 -6.18900 -0.85769 -0.15723 -0.11484 0.61458 1.06709 1.37580 1.44397 1.51509 1.57982 1.74583 1.84102 2.21849 2.34375 2.75674 2.97407 3.00756 3.07905 3.25833 3.59352 3.73634 3.85153 3.90070 3.97945 4.12523 4.26693 4.27143 4.36072 4.48114 4.54364 4.60803 4.69892 4.83159 4.99624 5.03709 5.10270 5.20468 5.42372 5.46292 5.54037 5.56989 5.89577 6.18181 6.76058 6.94298 7.03786 8.70152 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.002832 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.429338 B = 9883.435588 C =10992.486707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.018 3.982 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.536 4.536 8 H 0.091 0.909 9 S -0.147 6.147 10 C -0.019 4.019 11 C 0.225 3.775 12 N -0.483 5.483 13 C 0.213 3.787 14 C -0.052 4.052 15 C -0.050 4.050 16 C -0.150 4.150 17 C 0.156 3.844 18 O -0.489 6.489 19 C -0.094 4.094 20 C -0.092 4.092 21 C -0.117 4.117 22 C -0.105 4.105 23 C -0.135 4.135 24 C -0.022 4.022 25 N -0.388 5.388 26 O 0.077 5.923 27 H 0.273 0.727 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.170 0.830 32 H 0.418 0.582 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.135 0.865 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -21.817 -6.700 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.684 4.684 8 H 0.109 0.891 9 S 0.079 5.921 10 C -0.168 4.168 11 C 0.004 3.996 12 N -0.217 5.217 13 C -0.057 4.057 14 C -0.054 4.054 15 C -0.071 4.071 16 C -0.168 4.168 17 C 0.110 3.890 18 O -0.304 6.304 19 C -0.095 4.095 20 C -0.109 4.109 21 C -0.135 4.135 22 C -0.123 4.123 23 C -0.153 4.153 24 C -0.023 4.023 25 N -0.096 5.096 26 O 0.019 5.981 27 H 0.082 0.918 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.187 0.813 32 H 0.280 0.720 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.153 0.847 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.917 -22.518 -6.907 23.631 hybrid contribution 1.241 1.777 0.628 2.257 sum -0.675 -20.741 -6.279 21.681 Atomic orbital electron populations 1.70139 1.07843 1.28836 1.47707 1.26070 0.95963 1.03146 0.93515 0.84951 0.78309 0.76021 0.78755 1.19474 1.20407 1.18068 1.23087 0.95470 0.90555 1.59302 0.89105 1.85250 1.09435 1.00182 1.97193 1.21819 1.02067 0.84182 1.08765 1.28091 0.94373 0.96847 0.80291 1.72193 1.18502 1.02575 1.28444 1.24107 0.99736 0.94264 0.87627 1.17459 1.01898 0.89357 0.96676 1.21148 0.97376 0.89807 0.98730 1.21425 1.00351 1.00125 0.94927 1.18482 0.94748 0.85651 0.90091 1.84688 1.50616 1.40363 1.54738 1.18467 1.00485 0.92426 0.98131 1.21284 0.95277 0.99002 0.95355 1.21252 1.00185 0.91819 1.00227 1.21243 0.95974 1.00660 0.94398 1.21155 0.98723 0.96123 0.99282 1.17821 0.96111 0.93990 0.94401 1.74961 1.18952 1.00663 1.15073 1.85258 1.59155 1.18020 1.35689 0.91839 0.85458 0.85887 0.84000 0.81295 0.71998 0.81885 0.82375 0.84734 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.84 13.22 21.65 0.29 -52.55 16 2 C 0.02 0.99 5.49 84.86 0.47 1.46 16 3 Si 1.00 41.65 29.55 68.60 2.03 43.67 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.54 -28.61 9.50 67.95 0.65 -27.97 16 8 H 0.09 4.49 7.80 -2.91 -0.02 4.46 16 9 S -0.15 -7.42 21.42 -56.49 -1.21 -8.63 16 10 C -0.02 -0.74 6.30 71.24 0.45 -0.29 16 11 C 0.22 8.49 7.75 88.36 0.68 9.18 16 12 N -0.48 -18.70 10.02 -302.30 -3.03 -21.73 16 13 C 0.21 7.67 6.83 137.10 0.94 8.61 16 14 C -0.05 -1.60 5.91 -19.81 -0.12 -1.72 16 15 C -0.05 -1.18 9.72 22.46 0.22 -0.97 16 16 C -0.15 -2.66 9.92 22.31 0.22 -2.44 16 17 C 0.16 2.85 6.71 22.87 0.15 3.00 16 18 O -0.49 -5.89 12.70 -90.32 -1.15 -7.04 16 19 C -0.09 -2.20 5.75 -21.24 -0.12 -2.32 16 20 C -0.09 -1.71 9.56 22.33 0.21 -1.50 16 21 C -0.12 -2.29 9.95 22.04 0.22 -2.07 16 22 C -0.10 -2.73 9.95 22.05 0.22 -2.51 16 23 C -0.13 -4.36 9.27 22.29 0.21 -4.16 16 24 C -0.02 -0.66 5.76 -21.16 -0.12 -0.78 16 25 N -0.39 -14.16 12.21 -58.87 -0.72 -14.88 16 26 O 0.08 2.86 11.29 74.52 0.84 3.70 16 27 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.13 4.23 8.14 -2.40 -0.02 4.21 16 29 H 0.12 4.41 8.14 -2.40 -0.02 4.39 16 30 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.42 0.74 9.06 -74.05 -0.67 0.07 16 33 H 0.16 1.96 7.60 -2.91 -0.02 1.93 16 34 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.11 4.06 6.11 -2.91 -0.02 4.04 16 Total: -1.00 -70.98 337.50 1.81 -69.17 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.48 Total: 12.74 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 4.27 Total: -24.45 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -3.46 Total: -89.16 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: -0.31 Total: -3.33 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: -7.42 SS G_CDS: -1.21 Total: -8.63 kcal Total: -70.98 1.81 -69.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350576784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.541 kcal (2) G-P(sol) polarization free energy of solvation -70.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds