Wall clock time and date at job start Tue Mar 31 2020 14:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47130 * 2 1 4 4 O 1.42896 * 109.46815 * 119.99793 * 2 1 3 5 5 C 1.42903 * 113.99954 * 90.00410 * 4 2 1 6 6 C 1.52999 * 109.47112 * 179.97438 * 5 4 2 7 7 O 1.42906 * 109.47281 * 65.00140 * 6 5 4 8 8 C 1.35654 * 117.00286 * 179.97438 * 7 6 5 9 9 C 1.38533 * 120.27162 * 269.97514 * 8 7 6 10 10 Br 1.89102 * 119.97765 * 0.04469 * 9 8 7 11 11 C 1.38365 * 120.03743 * 180.02562 * 9 8 7 12 12 C 1.38821 * 120.58019 * 0.02652 * 11 9 8 13 13 C 1.36490 * 120.54673 * 359.66445 * 12 11 9 14 14 C 1.40741 * 119.94153 * 0.60957 * 13 12 11 15 15 C 1.41151 * 120.28063 * 179.68928 * 14 13 12 16 16 H 1.08006 * 120.00218 * 155.83053 * 15 14 13 17 17 C 1.39934 * 120.00650 * 335.55336 * 15 14 13 18 18 N 1.30868 * 119.99655 * 341.67180 * 17 15 14 19 19 Si 1.86801 * 120.00357 * 161.66649 * 17 15 14 20 20 H 1.48495 * 109.46856 * 60.00427 * 19 17 15 21 21 H 1.48500 * 109.47104 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46844 * 300.00275 * 19 17 15 23 23 H 1.08999 * 109.47212 * 300.00497 * 1 2 3 24 24 H 1.09004 * 109.46678 * 59.99868 * 1 2 3 25 25 H 1.08998 * 109.46896 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47537 * 239.99932 * 2 1 3 27 27 H 1.08995 * 109.46902 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47149 * 300.00058 * 3 2 1 29 29 H 1.09005 * 109.46853 * 59.99868 * 3 2 1 30 30 H 1.08998 * 109.47237 * 59.99581 * 5 4 2 31 31 H 1.08994 * 109.46954 * 299.99948 * 5 4 2 32 32 H 1.09001 * 109.47530 * 305.00068 * 6 5 4 33 33 H 1.09002 * 109.47172 * 184.99437 * 6 5 4 34 34 H 1.07993 * 119.71303 * 179.97438 * 11 9 8 35 35 H 1.08001 * 119.72429 * 179.97438 * 12 11 9 36 36 H 1.07999 * 120.02624 * 180.30310 * 13 12 11 37 37 H 0.97001 * 119.99912 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9886 6 6 2.7090 -2.6924 2.2942 7 8 1.7014 -2.5745 3.3007 8 6 1.9947 -3.0741 4.5274 9 6 1.6967 -4.3917 4.8343 10 35 0.8789 -5.5016 3.5400 11 6 1.9975 -4.8961 6.0871 12 6 2.5977 -4.0923 7.0466 13 6 2.9073 -2.7926 6.7677 14 6 2.6060 -2.2546 5.5025 15 6 2.9171 -0.9095 5.2086 16 1 3.0594 -0.5996 4.1838 17 6 3.0356 0.0238 6.2445 18 7 2.5223 -0.2349 7.4202 19 14 3.9266 1.6389 5.9493 20 1 3.2433 2.3902 4.8659 21 1 3.9145 2.4459 7.1958 22 1 5.3307 1.3640 5.5516 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 2.9319 -2.2467 0.1987 31 1 1.2538 -2.5433 0.7124 32 1 3.6079 -2.1671 2.6168 33 1 2.9410 -3.7453 2.1342 34 1 1.7625 -5.9239 6.3209 35 1 2.8260 -4.5002 8.0202 36 1 3.3786 -2.1761 7.5189 37 1 2.6041 0.4122 8.1381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352208135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:27 Heat of formation + Delta-G solvation = -75.414208 kcal Electronic energy + Delta-G solvation = -20388.491741 eV Core-core repulsion = 17176.974861 eV Total energy + Delta-G solvation = -3211.516879 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.66857 -37.92844 -35.96861 -33.87411 -32.70234 -30.90853 -29.79795 -28.80792 -27.40088 -27.07147 -25.29242 -22.23841 -21.13991 -21.01965 -20.56727 -17.36289 -16.77118 -16.58040 -15.47714 -14.99140 -14.89855 -14.60755 -14.22680 -13.62319 -13.35820 -13.07872 -12.70110 -12.48376 -12.23068 -12.11099 -11.96638 -11.70096 -11.40270 -11.33815 -11.20799 -11.10405 -10.78516 -10.60612 -10.43036 -10.21833 -9.85408 -9.72518 -9.35621 -9.25600 -9.17890 -8.67302 -7.53452 -7.38452 -6.88934 -4.43884 2.49154 2.60614 2.69786 3.03148 3.07690 3.14176 3.87994 3.95860 4.41687 4.68472 5.00397 5.18383 5.30110 5.45012 5.51236 5.63374 5.68493 5.72957 5.91243 5.94736 5.96762 6.11222 6.16101 6.29321 6.34899 6.39392 6.45374 6.82792 6.88538 7.07996 7.11383 7.42424 7.59753 7.71593 7.85428 8.01253 8.33767 8.60394 8.70342 8.99308 10.03891 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.008713 B = 0.007271 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.822959 B = 3849.964149 C = 6740.025775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.364 6.364 5 C 0.071 3.929 6 C 0.062 3.938 7 O -0.300 6.300 8 C -0.011 4.011 9 C -0.056 4.056 10 Br -0.103 7.103 11 C -0.217 4.217 12 C -0.100 4.100 13 C -0.147 4.147 14 C 0.102 3.898 15 C -0.428 4.428 16 H 0.090 0.910 17 C 0.075 3.925 18 N -0.783 5.783 19 Si 0.911 3.089 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.262 1.262 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.010 -2.110 -9.730 9.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.283 6.283 5 C -0.006 4.006 6 C -0.013 4.013 7 O -0.216 6.216 8 C -0.058 4.058 9 C -0.135 4.135 10 Br -0.019 7.019 11 C -0.238 4.238 12 C -0.120 4.120 13 C -0.166 4.166 14 C 0.098 3.902 15 C -0.456 4.456 16 H 0.108 0.892 17 C -0.144 4.144 18 N -0.407 5.407 19 Si 0.735 3.265 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.187 1.187 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.494 -2.219 -9.858 10.117 hybrid contribution 0.576 0.647 0.105 0.873 sum 0.082 -1.572 -9.753 9.879 Atomic orbital electron populations 1.22280 0.96265 1.02360 1.02197 1.22018 0.93682 0.93758 0.88419 1.21850 1.01628 0.94905 1.02268 1.88131 1.86236 1.19542 1.34380 1.22520 0.99593 0.82186 0.96289 1.22587 0.92757 0.98085 0.87900 1.86085 1.38101 1.80269 1.17144 1.18474 1.09535 0.90835 0.86954 1.21833 1.04938 0.92596 0.94120 1.96394 1.81559 1.66775 1.57138 1.20154 1.11265 0.99147 0.93236 1.20423 0.99717 0.94671 0.97159 1.21106 1.03582 0.93941 0.98017 1.17818 0.88216 0.93237 0.90937 1.19567 1.38819 0.92238 0.94992 0.89195 1.25998 0.93245 1.00864 0.94319 1.69833 1.31583 1.36173 1.03133 0.86296 0.80836 0.80540 0.78836 1.18513 1.20280 1.18670 0.91499 0.92351 0.92491 0.92946 0.92178 0.91778 0.91572 0.92813 0.92914 0.92678 0.92834 0.88177 0.88408 0.85742 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.53 37.16 0.35 -1.88 16 2 C 0.08 1.09 3.34 -26.73 -0.09 1.00 16 3 C -0.15 -1.84 9.56 37.16 0.36 -1.48 16 4 O -0.36 -6.54 9.95 -40.07 -0.40 -6.94 16 5 C 0.07 1.16 6.13 37.16 0.23 1.38 16 6 C 0.06 1.21 6.26 37.16 0.23 1.44 16 7 O -0.30 -7.04 8.66 -23.51 -0.20 -7.25 16 8 C -0.01 -0.27 5.75 -38.31 -0.22 -0.49 16 9 C -0.06 -1.29 6.23 -39.43 -0.25 -1.53 16 10 Br -0.10 -1.99 33.16 -68.01 -2.26 -4.25 16 11 C -0.22 -4.81 9.78 -39.32 -0.38 -5.20 16 12 C -0.10 -2.26 9.97 -40.00 -0.40 -2.66 16 13 C -0.15 -3.66 8.64 -39.27 -0.34 -4.00 16 14 C 0.10 2.68 5.58 -106.69 -0.60 2.08 16 15 C -0.43 -11.19 8.72 -37.84 -0.33 -11.52 16 16 H 0.09 2.37 7.06 -52.48 -0.37 2.00 16 17 C 0.08 1.85 5.13 -17.33 -0.09 1.76 16 18 N -0.78 -19.60 10.98 55.55 0.61 -18.99 16 19 Si 0.91 18.51 29.60 -169.99 -5.03 13.48 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.75 7.87 -51.93 -0.41 0.34 16 26 H 0.05 0.62 7.79 -51.93 -0.40 0.21 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.05 0.83 7.87 -51.93 -0.41 0.43 16 32 H 0.05 1.12 7.73 -51.93 -0.40 0.72 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.12 3.15 6.17 -52.49 -0.32 2.82 16 37 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -27.57 334.13 -9.02 -36.59 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.25 Total: 3.43 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -1.52 Total: -21.11 kcal Atomic # 7 Polarization: -19.60 SS G_CDS: 0.61 Total: -18.99 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.60 Total: -14.19 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Atomic # 35 Polarization: -1.99 SS G_CDS: -2.26 Total: -4.25 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.57 -9.02 -36.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352208135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.822 kcal (2) G-P(sol) polarization free energy of solvation -27.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds