Wall clock time and date at job start Tue Mar 31 2020 14:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47130 * 2 1 4 4 O 1.42896 * 109.46815 * 119.99793 * 2 1 3 5 5 C 1.42903 * 113.99954 * 90.00410 * 4 2 1 6 6 C 1.52999 * 109.47112 * 179.97438 * 5 4 2 7 7 O 1.42906 * 109.47281 * 65.00140 * 6 5 4 8 8 C 1.35654 * 117.00286 * 179.97438 * 7 6 5 9 9 C 1.38533 * 120.27162 * 269.97514 * 8 7 6 10 10 Br 1.89102 * 119.97765 * 0.04469 * 9 8 7 11 11 C 1.38365 * 120.03743 * 180.02562 * 9 8 7 12 12 C 1.38821 * 120.58019 * 0.02652 * 11 9 8 13 13 C 1.36490 * 120.54673 * 359.66445 * 12 11 9 14 14 C 1.40741 * 119.94153 * 0.60957 * 13 12 11 15 15 C 1.41151 * 120.28063 * 179.68928 * 14 13 12 16 16 H 1.08006 * 120.00218 * 155.83053 * 15 14 13 17 17 C 1.39934 * 120.00650 * 335.55336 * 15 14 13 18 18 N 1.30868 * 119.99655 * 341.67180 * 17 15 14 19 19 Si 1.86801 * 120.00357 * 161.66649 * 17 15 14 20 20 H 1.48495 * 109.46856 * 60.00427 * 19 17 15 21 21 H 1.48500 * 109.47104 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46844 * 300.00275 * 19 17 15 23 23 H 1.08999 * 109.47212 * 300.00497 * 1 2 3 24 24 H 1.09004 * 109.46678 * 59.99868 * 1 2 3 25 25 H 1.08998 * 109.46896 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47537 * 239.99932 * 2 1 3 27 27 H 1.08995 * 109.46902 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47149 * 300.00058 * 3 2 1 29 29 H 1.09005 * 109.46853 * 59.99868 * 3 2 1 30 30 H 1.08998 * 109.47237 * 59.99581 * 5 4 2 31 31 H 1.08994 * 109.46954 * 299.99948 * 5 4 2 32 32 H 1.09001 * 109.47530 * 305.00068 * 6 5 4 33 33 H 1.09002 * 109.47172 * 184.99437 * 6 5 4 34 34 H 1.07993 * 119.71303 * 179.97438 * 11 9 8 35 35 H 1.08001 * 119.72429 * 179.97438 * 12 11 9 36 36 H 1.07999 * 120.02624 * 180.30310 * 13 12 11 37 37 H 0.97001 * 119.99912 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9886 6 6 2.7090 -2.6924 2.2942 7 8 1.7014 -2.5745 3.3007 8 6 1.9947 -3.0741 4.5274 9 6 1.6967 -4.3917 4.8343 10 35 0.8789 -5.5016 3.5400 11 6 1.9975 -4.8961 6.0871 12 6 2.5977 -4.0923 7.0466 13 6 2.9073 -2.7926 6.7677 14 6 2.6060 -2.2546 5.5025 15 6 2.9171 -0.9095 5.2086 16 1 3.0594 -0.5996 4.1838 17 6 3.0356 0.0238 6.2445 18 7 2.5223 -0.2349 7.4202 19 14 3.9266 1.6389 5.9493 20 1 3.2433 2.3902 4.8659 21 1 3.9145 2.4459 7.1958 22 1 5.3307 1.3640 5.5516 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 2.9319 -2.2467 0.1987 31 1 1.2538 -2.5433 0.7124 32 1 3.6079 -2.1671 2.6168 33 1 2.9410 -3.7453 2.1342 34 1 1.7625 -5.9239 6.3209 35 1 2.8260 -4.5002 8.0202 36 1 3.3786 -2.1761 7.5189 37 1 2.6041 0.4122 8.1381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352208135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:26 Heat of formation + Delta-G solvation = -89.156332 kcal Electronic energy + Delta-G solvation = -20389.087644 eV Core-core repulsion = 17176.974861 eV Total energy + Delta-G solvation = -3212.112783 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37620 -39.26005 -37.68997 -35.70995 -33.86702 -32.66969 -31.48218 -30.41337 -29.11706 -28.08337 -27.15207 -23.70447 -22.88467 -22.36802 -22.16792 -19.22376 -18.39756 -17.95862 -17.22012 -16.44980 -16.34598 -16.13221 -15.84926 -15.01391 -14.79338 -14.70601 -14.41724 -13.87144 -13.59539 -13.45058 -13.32059 -13.12180 -13.06075 -12.84383 -12.77482 -12.31811 -12.29783 -12.14664 -11.94011 -11.67559 -11.50586 -11.46111 -11.05121 -10.93981 -10.48378 -10.40277 -9.39665 -9.18062 -8.71305 -6.36400 0.66658 0.79941 0.94295 1.35966 1.46412 1.49478 2.18773 2.59853 2.79304 3.02668 3.59594 3.95919 4.14769 4.24477 4.26067 4.32101 4.40309 4.47344 4.52270 4.72541 4.73485 4.79643 4.92299 4.94627 4.95715 4.99169 5.06149 5.22678 5.30535 5.30994 5.35765 5.60849 5.87025 5.98726 6.15144 6.41850 6.47800 6.72915 6.81495 7.17775 8.24017 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.008713 B = 0.007271 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.822959 B = 3849.964149 C = 6740.025775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.402 6.402 5 C 0.075 3.925 6 C 0.061 3.939 7 O -0.318 6.318 8 C -0.022 4.022 9 C -0.073 4.073 10 Br -0.066 7.066 11 C -0.210 4.210 12 C -0.100 4.100 13 C -0.167 4.167 14 C 0.072 3.928 15 C -0.461 4.461 16 H 0.074 0.926 17 C 0.039 3.961 18 N -0.812 5.812 19 Si 0.976 3.024 20 H -0.265 1.265 21 H -0.262 1.262 22 H -0.257 1.257 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -2.562 -11.062 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 C -0.204 4.204 4 O -0.322 6.322 5 C -0.001 4.001 6 C -0.014 4.014 7 O -0.235 6.235 8 C -0.069 4.069 9 C -0.153 4.153 10 Br 0.018 6.982 11 C -0.231 4.231 12 C -0.119 4.119 13 C -0.186 4.186 14 C 0.068 3.932 15 C -0.489 4.489 16 H 0.092 0.908 17 C -0.177 4.177 18 N -0.437 5.437 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.186 1.186 22 H -0.182 1.182 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.478 -2.691 -11.193 11.522 hybrid contribution 0.490 0.642 0.423 0.912 sum 0.011 -2.048 -10.770 10.963 Atomic orbital electron populations 1.22264 0.95879 1.02107 1.02543 1.22330 0.94094 0.94307 0.88014 1.21876 1.01583 0.94232 1.02757 1.88094 1.86774 1.20287 1.37067 1.22553 1.00752 0.81699 0.95111 1.22759 0.91521 0.98932 0.88186 1.86009 1.39576 1.80623 1.17309 1.18674 1.09183 0.91605 0.87477 1.22059 1.04968 0.92769 0.95478 1.96387 1.80860 1.65116 1.55797 1.20527 1.09734 1.00221 0.92642 1.20747 0.98734 0.93793 0.98620 1.21106 1.04793 0.95039 0.97706 1.18181 0.89106 0.93874 0.92080 1.19601 1.41367 0.93171 0.94790 0.90786 1.26715 0.93389 1.03784 0.93833 1.69855 1.32318 1.37625 1.03877 0.85341 0.79534 0.76494 0.79008 1.19005 1.18551 1.18161 0.93813 0.89299 0.93028 0.90298 0.92283 0.88623 0.93694 0.89189 0.92406 0.94580 0.91657 0.85472 0.85410 0.86858 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 9.53 71.98 0.69 -3.51 16 2 C 0.07 1.81 3.34 30.60 0.10 1.91 16 3 C -0.15 -3.44 9.56 71.98 0.69 -2.75 16 4 O -0.40 -14.43 9.95 -144.35 -1.44 -15.87 16 5 C 0.08 2.38 6.13 71.98 0.44 2.82 16 6 C 0.06 2.39 6.26 71.98 0.45 2.84 16 7 O -0.32 -15.27 8.66 -85.06 -0.74 -16.01 16 8 C -0.02 -1.13 5.75 23.09 0.13 -1.00 16 9 C -0.07 -3.33 6.23 22.37 0.14 -3.19 16 10 Br -0.07 -2.45 33.16 -20.37 -0.68 -3.12 16 11 C -0.21 -9.03 9.78 22.44 0.22 -8.81 16 12 C -0.10 -4.43 9.97 22.00 0.22 -4.22 16 13 C -0.17 -8.51 8.64 22.47 0.19 -8.31 16 14 C 0.07 3.88 5.58 -21.20 -0.12 3.76 16 15 C -0.46 -25.20 8.72 23.40 0.20 -24.99 16 16 H 0.07 4.14 7.06 -2.91 -0.02 4.12 16 17 C 0.04 1.99 5.13 85.25 0.44 2.43 16 18 N -0.81 -41.71 10.98 21.83 0.24 -41.47 16 19 Si 0.98 38.80 29.60 68.60 2.03 40.83 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 22 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.09 1.60 8.14 -2.38 -0.02 1.59 16 25 H 0.05 1.30 7.87 -2.39 -0.02 1.28 16 26 H 0.08 1.63 7.79 -2.39 -0.02 1.61 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.09 2.17 8.08 -2.39 -0.02 2.16 16 31 H 0.06 1.75 7.87 -2.39 -0.02 1.73 16 32 H 0.04 1.53 7.73 -2.39 -0.02 1.51 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 35 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 36 H 0.11 5.93 6.17 -2.91 -0.02 5.92 16 37 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 Total: -1.00 -61.20 334.13 4.27 -56.93 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 1.06 Total: 21.73 kcal Atomic # 6 Polarization: -46.82 SS G_CDS: 3.80 Total: -43.02 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.24 Total: -41.47 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -2.17 Total: -31.88 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 35 Polarization: -2.45 SS G_CDS: -0.68 Total: -3.12 kcal Total: -61.20 4.27 -56.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352208135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.226 kcal (2) G-P(sol) polarization free energy of solvation -61.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds