Wall clock time and date at job start Tue Mar 31 2020 14:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47349 * 2 1 4 4 O 1.42894 * 109.47503 * 239.99696 * 2 1 3 5 5 C 1.53004 * 109.46784 * 119.99593 * 2 1 3 6 6 C 1.53005 * 109.47189 * 184.99912 * 5 2 1 7 7 O 1.42899 * 109.47183 * 180.02562 * 6 5 2 8 8 C 1.35655 * 117.00114 * 180.02562 * 7 6 5 9 9 C 1.38530 * 120.26689 * 269.98072 * 8 7 6 10 10 Br 1.89098 * 119.98480 * 0.03783 * 9 8 7 11 11 C 1.38377 * 120.03330 * 180.02562 * 9 8 7 12 12 C 1.38823 * 120.58007 * 0.02562 * 11 9 8 13 13 C 1.36485 * 120.54370 * 359.67818 * 12 11 9 14 14 C 1.40735 * 119.94830 * 0.60245 * 13 12 11 15 15 C 1.41150 * 120.28464 * 179.69652 * 14 13 12 16 16 H 1.08004 * 119.99890 * 155.86579 * 15 14 13 17 17 C 1.39935 * 120.00537 * 335.58999 * 15 14 13 18 18 N 1.30873 * 119.99547 * 341.63121 * 17 15 14 19 19 Si 1.86796 * 120.00635 * 161.62604 * 17 15 14 20 20 H 1.48499 * 109.47117 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46988 * 120.00177 * 19 17 15 22 22 H 1.48497 * 109.47048 * 239.99999 * 19 17 15 23 23 H 1.08992 * 109.47195 * 300.00539 * 1 2 3 24 24 H 1.08998 * 109.46462 * 60.00290 * 1 2 3 25 25 H 1.08999 * 109.47240 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47445 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.46942 * 299.99711 * 3 2 1 28 28 H 1.08999 * 109.47013 * 59.99640 * 3 2 1 29 29 H 0.96699 * 113.99820 * 60.00065 * 4 2 1 30 30 H 1.09003 * 109.46743 * 65.00271 * 5 2 1 31 31 H 1.09004 * 109.47347 * 305.00177 * 5 2 1 32 32 H 1.08999 * 109.46585 * 60.00206 * 6 5 2 33 33 H 1.08990 * 109.47045 * 300.00395 * 6 5 2 34 34 H 1.07994 * 119.70889 * 180.02562 * 11 9 8 35 35 H 1.08002 * 119.72220 * 179.97438 * 12 11 9 36 36 H 1.08005 * 120.02293 * 180.30135 * 13 12 11 37 37 H 0.96993 * 120.00059 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 6 3.5648 -0.6133 1.3139 7 8 4.0411 -1.2874 2.4804 8 6 5.3816 -1.2854 2.6886 9 6 6.1703 -2.2992 2.1696 10 35 5.3788 -3.6923 1.1654 11 6 7.5371 -2.2927 2.3854 12 6 8.1311 -1.2762 3.1211 13 6 7.3774 -0.2627 3.6382 14 6 5.9845 -0.2500 3.4375 15 6 5.1974 0.7913 3.9745 16 1 4.2440 1.0328 3.5282 17 6 5.6496 1.5070 5.0887 18 7 6.5924 1.0091 5.8477 19 14 4.9077 3.1730 5.4929 20 1 3.8672 3.5084 4.4879 21 1 4.2935 3.1267 6.8441 22 1 5.9723 4.2080 5.4682 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.7211 -0.2702 -1.9978 30 1 1.7515 -1.7715 1.2057 31 1 1.6053 -0.2616 2.1371 32 1 3.8531 0.4370 1.3575 33 1 3.9994 -1.0728 0.4262 34 1 8.1470 -3.0853 1.9780 35 1 9.1992 -1.2851 3.2814 36 1 7.8490 0.5265 4.2051 37 1 6.9056 1.5049 6.6202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352214239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:02 Heat of formation + Delta-G solvation = -100.625199 kcal Electronic energy + Delta-G solvation = -20464.200359 eV Core-core repulsion = 17251.590249 eV Total energy + Delta-G solvation = -3212.610110 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44380 -39.38149 -37.69910 -35.72711 -34.04526 -32.67701 -31.47617 -30.40908 -29.15567 -28.26993 -27.19924 -24.38691 -22.90300 -22.37420 -21.08318 -19.23107 -18.32348 -17.59550 -17.30952 -16.52215 -16.22982 -16.00128 -15.74091 -15.12059 -14.79950 -14.55771 -14.41583 -14.19472 -13.56410 -13.33872 -13.14871 -13.01454 -12.83390 -12.72795 -12.66793 -12.63467 -12.32600 -12.11569 -11.92972 -11.64364 -11.55062 -11.46380 -11.06639 -10.96193 -10.81950 -10.37330 -9.41800 -9.19281 -8.72172 -6.39070 0.65458 0.77761 0.95014 1.37307 1.46248 1.52445 2.17632 2.58420 2.96590 3.34983 3.56911 3.87599 3.95800 4.14060 4.24569 4.39657 4.51410 4.59738 4.68673 4.71004 4.81116 4.89176 4.93641 4.97615 5.04875 5.07410 5.21778 5.22346 5.26364 5.29762 5.39454 5.60029 5.84183 5.96493 6.12431 6.42614 6.70181 6.79158 6.96173 7.15906 8.23710 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009129 B = 0.007103 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.450826 B = 3941.189660 C = 6619.158684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.133 3.867 3 C -0.181 4.181 4 O -0.576 6.576 5 C -0.099 4.099 6 C 0.071 3.929 7 O -0.329 6.329 8 C -0.021 4.021 9 C -0.076 4.076 10 Br -0.069 7.069 11 C -0.211 4.211 12 C -0.100 4.100 13 C -0.166 4.166 14 C 0.072 3.928 15 C -0.465 4.465 16 H 0.077 0.923 17 C 0.038 3.962 18 N -0.813 5.813 19 Si 0.979 3.021 20 H -0.256 1.256 21 H -0.265 1.265 22 H -0.260 1.260 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.390 0.610 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 0.647 -9.261 11.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.093 3.907 3 C -0.239 4.239 4 O -0.385 6.385 5 C -0.136 4.136 6 C -0.004 4.004 7 O -0.246 6.246 8 C -0.067 4.067 9 C -0.156 4.156 10 Br 0.016 6.984 11 C -0.232 4.232 12 C -0.119 4.119 13 C -0.186 4.186 14 C 0.068 3.932 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.179 4.179 18 N -0.437 5.437 19 Si 0.799 3.201 20 H -0.180 1.180 21 H -0.190 1.190 22 H -0.184 1.184 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.239 0.761 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.133 0.867 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.117 -0.307 -8.861 11.369 hybrid contribution 0.119 1.191 0.171 1.209 sum -6.998 0.884 -8.690 11.193 Atomic orbital electron populations 1.22393 0.93305 1.02993 1.03868 1.21082 0.93913 0.90960 0.84775 1.22563 1.01476 0.96132 1.03705 1.86596 1.77752 1.57583 1.16527 1.21479 0.92917 1.01750 0.97494 1.22648 0.95340 0.95300 0.87066 1.85901 1.18735 1.75588 1.44422 1.18673 0.83066 0.96557 1.08442 1.22115 0.95587 0.95467 1.02384 1.96407 1.83845 1.46982 1.71176 1.20535 0.91753 1.02782 1.08117 1.20752 0.99588 0.94237 0.97337 1.21111 0.93219 1.00419 1.03850 1.18183 0.92998 0.90794 0.91226 1.19640 1.04814 1.13659 1.11218 0.90507 1.26777 0.94477 1.02325 0.94275 1.69866 1.24145 1.37742 1.11988 0.85197 0.79365 0.76508 0.79026 1.17972 1.19021 1.18403 0.90931 0.90009 0.92086 0.93523 0.89829 0.91284 0.76055 0.91508 0.89868 0.94484 0.94392 0.85600 0.85341 0.86678 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 8.82 71.98 0.63 -2.45 16 2 C 0.13 3.29 1.09 -10.79 -0.01 3.28 16 3 C -0.18 -4.25 8.33 71.98 0.60 -3.65 16 4 O -0.58 -14.68 12.51 -148.98 -1.86 -16.55 16 5 C -0.10 -3.22 4.88 30.60 0.15 -3.07 16 6 C 0.07 2.90 5.29 71.98 0.38 3.28 16 7 O -0.33 -15.96 8.70 -89.71 -0.78 -16.74 16 8 C -0.02 -1.05 5.75 23.09 0.13 -0.92 16 9 C -0.08 -3.58 6.23 22.37 0.14 -3.44 16 10 Br -0.07 -2.74 33.16 -20.37 -0.68 -3.41 16 11 C -0.21 -9.29 9.78 22.44 0.22 -9.07 16 12 C -0.10 -4.48 9.97 22.00 0.22 -4.27 16 13 C -0.17 -8.45 8.64 22.47 0.19 -8.26 16 14 C 0.07 3.86 5.58 -21.20 -0.12 3.74 16 15 C -0.47 -24.52 8.72 23.40 0.20 -24.31 16 16 H 0.08 4.01 7.06 -2.91 -0.02 3.99 16 17 C 0.04 1.85 5.13 85.25 0.44 2.29 16 18 N -0.81 -40.71 10.98 21.83 0.24 -40.47 16 19 Si 0.98 36.61 29.60 68.60 2.03 38.64 16 20 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 21 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.32 6.34 -2.39 -0.02 1.31 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.39 6.09 9.05 -74.06 -0.67 5.42 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.04 1.56 5.94 -2.39 -0.01 1.55 16 33 H 0.04 1.60 7.82 -2.39 -0.02 1.59 16 34 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 35 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 36 H 0.12 5.97 6.17 -2.91 -0.02 5.95 16 37 H 0.29 13.10 8.30 -92.71 -0.77 12.33 16 Total: -1.00 -60.89 328.26 2.54 -58.34 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.41 Total: 27.04 kcal Atomic # 6 Polarization: -50.03 SS G_CDS: 3.18 Total: -46.85 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.24 Total: -40.47 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -2.64 Total: -33.29 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Atomic # 35 Polarization: -2.74 SS G_CDS: -0.68 Total: -3.41 kcal Total: -60.89 2.54 -58.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352214239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.282 kcal (2) G-P(sol) polarization free energy of solvation -60.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds