Wall clock time and date at job start Tue Mar 31 2020 15:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86793 * 119.99718 * 2 1 4 4 H 1.48499 * 109.47366 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47377 * 300.00009 * 3 2 1 6 6 H 1.48504 * 109.47136 * 59.99756 * 3 2 1 7 7 C 1.40042 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99684 * 180.02562 * 7 2 1 9 9 C 1.46380 * 120.00152 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99652 * 359.97438 * 9 7 2 11 11 N 1.34778 * 120.00033 * 180.02562 * 9 7 2 12 12 C 1.46495 * 119.99777 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47030 * 179.97438 * 12 11 9 14 14 N 1.28745 * 124.72099 * 90.30534 * 13 12 11 15 15 C 1.32671 * 117.12918 * 180.21535 * 14 13 12 16 16 C 1.47759 * 123.00868 * 179.79026 * 15 14 13 17 17 C 1.35495 * 125.08664 * 359.70831 * 16 15 14 18 18 C 1.46487 * 106.09180 * 179.73529 * 17 16 15 19 19 C 1.39559 * 134.21690 * 180.02562 * 18 17 16 20 20 C 1.36730 * 119.71087 * 179.97438 * 19 18 17 21 21 C 1.38740 * 120.41246 * 0.02562 * 20 19 18 22 22 C 1.37921 * 120.70774 * 359.97438 * 21 20 19 23 23 C 1.38874 * 119.85773 * 0.02562 * 22 21 20 24 24 O 1.34750 * 125.08031 * 179.39908 * 16 15 14 25 25 C 1.35117 * 113.97992 * 359.52072 * 15 14 13 26 26 S 1.70908 * 124.71637 * 270.02644 * 13 12 11 27 27 H 0.97000 * 120.00594 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99844 * 359.97438 * 11 9 7 29 29 H 1.08997 * 109.47329 * 59.99433 * 12 11 9 30 30 H 1.09001 * 109.47304 * 299.99249 * 12 11 9 31 31 H 1.07995 * 126.95159 * 359.71090 * 17 16 15 32 32 H 1.07996 * 120.14575 * 359.94177 * 19 18 17 33 33 H 1.07997 * 119.79849 * 179.97438 * 20 19 18 34 34 H 1.07995 * 119.64663 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.07265 * 180.02562 * 22 21 20 36 36 H 1.08000 * 126.07288 * 180.25073 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8818 2.3965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0016 12 6 1.2166 -4.9164 0.0010 13 6 2.1959 -6.0618 0.0018 14 7 2.6673 -6.6228 1.0603 15 6 3.5261 -7.6189 0.8857 16 6 4.1495 -8.3503 2.0081 17 6 3.9303 -8.0961 3.3208 18 6 4.7452 -9.0611 4.0629 19 6 4.9574 -9.3171 5.4183 20 6 5.8061 -10.3213 5.7935 21 6 6.4568 -11.0855 4.8357 22 6 6.2597 -10.8474 3.4916 23 6 5.4021 -9.8325 3.0877 24 8 5.0164 -9.3739 1.8792 25 6 3.7753 -7.9083 -0.4103 26 16 2.8300 -6.8012 -1.4026 27 1 -0.4851 0.8400 -0.0004 28 1 2.9191 -3.6476 0.0020 29 1 0.5909 -4.9743 -0.8896 30 1 0.5890 -4.9740 0.8903 31 1 3.2856 -7.3356 3.7360 32 1 4.4538 -8.7243 6.1675 33 1 5.9716 -10.5204 6.8420 34 1 7.1248 -11.8754 5.1459 35 1 6.7712 -11.4488 2.7546 36 1 4.4365 -8.6811 -0.7736 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358641701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:49 Heat of formation + Delta-G solvation = 40.448289 kcal Electronic energy + Delta-G solvation = -23004.713563 eV Core-core repulsion = 19354.293921 eV Total energy + Delta-G solvation = -3650.419642 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.64655 -39.84375 -38.10844 -37.32550 -33.90841 -32.98685 -32.40325 -31.16616 -30.63626 -29.02635 -27.66121 -25.81949 -24.44778 -23.14784 -21.89512 -21.58440 -19.99863 -19.78319 -18.30149 -17.58338 -17.16406 -17.03722 -16.45677 -15.85305 -15.44158 -15.12784 -14.75214 -14.44596 -14.19311 -14.15181 -13.79774 -13.42638 -13.20943 -13.12501 -12.71780 -12.56587 -12.24905 -12.17436 -11.62611 -11.51128 -11.20839 -11.19887 -10.97925 -10.57777 -10.50599 -10.23770 -9.74819 -9.58051 -9.43007 -8.90208 -8.85927 -8.06323 -7.69313 -7.67738 -6.24035 -4.69516 0.20248 0.79940 1.08634 1.18942 1.59473 1.87903 2.20771 3.01243 3.11422 3.20003 3.24515 3.45144 3.92757 4.08448 4.27904 4.42735 4.52938 4.64774 4.83349 4.89550 4.94727 4.96996 5.03220 5.09357 5.19954 5.49969 5.59117 5.63935 5.75197 5.92272 5.99163 6.08321 6.15940 6.20001 6.22121 6.38640 6.89146 7.39563 7.57113 7.78011 7.93111 8.25774 8.97657 9.39878 10.52131 10.70137 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.002406 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.777640 B =11634.346726 C =12615.098729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.577 6.577 11 N -0.761 5.761 12 C 0.206 3.794 13 C 0.062 3.938 14 N -0.447 5.447 15 C 0.128 3.872 16 C 0.099 3.901 17 C -0.156 4.156 18 C -0.130 4.130 19 C -0.066 4.066 20 C -0.138 4.138 21 C -0.094 4.094 22 C -0.108 4.108 23 C 0.058 3.942 24 O -0.188 6.188 25 C -0.247 4.247 26 S 0.170 5.830 27 H 0.269 0.731 28 H 0.383 0.617 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.168 0.832 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.388 -21.167 4.764 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.361 3.639 10 O -0.460 6.460 11 N -0.419 5.419 12 C 0.078 3.922 13 C -0.218 4.218 14 N -0.162 5.162 15 C -0.004 4.004 16 C 0.049 3.951 17 C -0.176 4.176 18 C -0.131 4.131 19 C -0.084 4.084 20 C -0.156 4.156 21 C -0.112 4.112 22 C -0.126 4.126 23 C 0.010 3.990 24 O -0.090 6.090 25 C -0.388 4.388 26 S 0.427 5.573 27 H 0.080 0.920 28 H 0.214 0.786 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.186 0.814 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.038 -20.794 3.893 23.862 hybrid contribution 1.356 0.273 0.786 1.591 sum 12.394 -20.521 4.679 24.425 Atomic orbital electron populations 1.70024 1.07053 1.27326 1.35078 1.25713 0.94657 1.00349 0.92578 0.86287 0.80482 0.81583 0.78253 1.18752 1.20113 1.20112 1.20873 0.93669 0.89019 1.54214 0.91255 1.18266 0.87218 0.82014 0.76369 1.90615 1.13970 1.86434 1.54969 1.46237 1.08750 1.03592 1.83294 1.19491 0.90022 0.79428 1.03261 1.27334 1.02244 1.01983 0.90244 1.65971 1.10238 1.08024 1.31975 1.17181 0.98355 0.95756 0.89092 1.18882 0.93919 0.89886 0.92364 1.22639 1.02726 1.01401 0.90883 1.19973 1.00379 0.98225 0.94545 1.20388 0.97398 0.97183 0.93435 1.20793 0.98279 0.96627 0.99915 1.20947 0.99423 0.99573 0.91274 1.19936 0.99234 0.96957 0.96493 1.19619 0.99386 0.97955 0.82026 1.83903 1.52348 1.42564 1.30151 1.27269 1.08390 1.07168 0.95924 1.84164 1.36295 1.24909 1.11885 0.92043 0.78553 0.90552 0.89755 0.81442 0.85210 0.85255 0.84751 0.85013 0.80077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.62 11.83 55.55 0.66 -21.96 16 2 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 3 Si 0.91 19.91 29.56 -169.99 -5.02 14.88 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -15.03 9.54 -35.63 -0.34 -15.37 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 9 C 0.56 15.48 7.75 -12.98 -0.10 15.38 16 10 O -0.58 -18.23 15.02 5.20 0.08 -18.15 16 11 N -0.76 -16.71 5.54 -62.91 -0.35 -17.06 16 12 C 0.21 3.87 6.24 -5.20 -0.03 3.83 16 13 C 0.06 0.97 6.73 -13.57 -0.09 0.88 16 14 N -0.45 -7.28 10.36 -8.52 -0.09 -7.37 16 15 C 0.13 1.86 6.68 -84.72 -0.57 1.30 16 16 C 0.10 1.41 7.02 -36.67 -0.26 1.15 16 17 C -0.16 -2.12 10.90 -37.24 -0.41 -2.53 16 18 C -0.13 -1.61 6.38 -105.18 -0.67 -2.28 16 19 C -0.07 -0.65 10.06 -39.63 -0.40 -1.04 16 20 C -0.14 -1.09 9.98 -39.94 -0.40 -1.49 16 21 C -0.09 -0.71 10.01 -39.51 -0.40 -1.10 16 22 C -0.11 -0.99 10.07 -39.46 -0.40 -1.39 16 23 C 0.06 0.70 7.40 -38.45 -0.28 0.42 16 24 O -0.19 -2.51 10.49 2.83 0.03 -2.48 16 25 C -0.25 -3.02 11.13 29.62 0.33 -2.69 16 26 S 0.17 2.11 23.16 -107.50 -2.49 -0.38 16 27 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 28 H 0.38 7.65 8.44 -40.82 -0.34 7.30 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 31 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.18 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -34.39 341.91 -9.41 -43.81 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -3.27 Total: 6.18 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -4.11 Total: -2.62 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.22 Total: -46.39 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.11 Total: -20.63 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.49 Total: -0.38 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.39 -9.41 -43.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358641701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.255 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds