Wall clock time and date at job start Tue Mar 31 2020 15:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86793 * 119.99718 * 2 1 4 4 H 1.48499 * 109.47366 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47377 * 300.00009 * 3 2 1 6 6 H 1.48504 * 109.47136 * 59.99756 * 3 2 1 7 7 C 1.40042 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99684 * 180.02562 * 7 2 1 9 9 C 1.46380 * 120.00152 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99652 * 359.97438 * 9 7 2 11 11 N 1.34778 * 120.00033 * 180.02562 * 9 7 2 12 12 C 1.46495 * 119.99777 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47030 * 179.97438 * 12 11 9 14 14 N 1.28745 * 124.72099 * 90.30534 * 13 12 11 15 15 C 1.32671 * 117.12918 * 180.21535 * 14 13 12 16 16 C 1.47759 * 123.00868 * 179.79026 * 15 14 13 17 17 C 1.35495 * 125.08664 * 359.70831 * 16 15 14 18 18 C 1.46487 * 106.09180 * 179.73529 * 17 16 15 19 19 C 1.39559 * 134.21690 * 180.02562 * 18 17 16 20 20 C 1.36730 * 119.71087 * 179.97438 * 19 18 17 21 21 C 1.38740 * 120.41246 * 0.02562 * 20 19 18 22 22 C 1.37921 * 120.70774 * 359.97438 * 21 20 19 23 23 C 1.38874 * 119.85773 * 0.02562 * 22 21 20 24 24 O 1.34750 * 125.08031 * 179.39908 * 16 15 14 25 25 C 1.35117 * 113.97992 * 359.52072 * 15 14 13 26 26 S 1.70908 * 124.71637 * 270.02644 * 13 12 11 27 27 H 0.97000 * 120.00594 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99844 * 359.97438 * 11 9 7 29 29 H 1.08997 * 109.47329 * 59.99433 * 12 11 9 30 30 H 1.09001 * 109.47304 * 299.99249 * 12 11 9 31 31 H 1.07995 * 126.95159 * 359.71090 * 17 16 15 32 32 H 1.07996 * 120.14575 * 359.94177 * 19 18 17 33 33 H 1.07997 * 119.79849 * 179.97438 * 20 19 18 34 34 H 1.07995 * 119.64663 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.07265 * 180.02562 * 22 21 20 36 36 H 1.08000 * 126.07288 * 180.25073 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8818 2.3965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0016 12 6 1.2166 -4.9164 0.0010 13 6 2.1959 -6.0618 0.0018 14 7 2.6673 -6.6228 1.0603 15 6 3.5261 -7.6189 0.8857 16 6 4.1495 -8.3503 2.0081 17 6 3.9303 -8.0961 3.3208 18 6 4.7452 -9.0611 4.0629 19 6 4.9574 -9.3171 5.4183 20 6 5.8061 -10.3213 5.7935 21 6 6.4568 -11.0855 4.8357 22 6 6.2597 -10.8474 3.4916 23 6 5.4021 -9.8325 3.0877 24 8 5.0164 -9.3739 1.8792 25 6 3.7753 -7.9083 -0.4103 26 16 2.8300 -6.8012 -1.4026 27 1 -0.4851 0.8400 -0.0004 28 1 2.9191 -3.6476 0.0020 29 1 0.5909 -4.9743 -0.8896 30 1 0.5890 -4.9740 0.8903 31 1 3.2856 -7.3356 3.7360 32 1 4.4538 -8.7243 6.1675 33 1 5.9716 -10.5204 6.8420 34 1 7.1248 -11.8754 5.1459 35 1 6.7712 -11.4488 2.7546 36 1 4.4365 -8.6811 -0.7736 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358641701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:48 Heat of formation + Delta-G solvation = 17.102110 kcal Electronic energy + Delta-G solvation = -23005.725929 eV Core-core repulsion = 19354.293921 eV Total energy + Delta-G solvation = -3651.432008 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.53016 -41.00382 -39.37634 -38.81833 -35.64845 -34.53770 -33.89875 -32.41141 -31.39878 -30.06203 -29.24432 -27.60082 -25.52059 -24.04720 -22.87215 -22.51996 -21.82113 -21.04926 -19.70141 -18.86384 -18.36475 -17.91590 -17.51499 -17.39263 -16.70083 -16.55381 -16.12301 -15.77569 -15.40487 -15.29097 -15.00615 -14.75216 -14.41848 -14.15185 -14.13544 -13.85212 -13.34286 -13.29536 -13.10592 -12.93380 -12.74617 -12.65063 -12.58379 -11.98549 -11.92020 -11.50874 -10.95748 -10.90320 -10.67548 -10.38676 -9.90408 -9.62614 -9.61439 -8.95835 -8.31032 -6.87676 -0.79394 -0.12933 0.11419 0.34145 0.48758 0.89955 1.27744 1.40740 1.41522 1.59172 1.92713 2.25200 2.44532 2.72818 2.83046 3.16149 3.32074 3.58502 3.62040 3.80913 3.92924 4.09576 4.12110 4.17531 4.35471 4.37531 4.50611 4.58580 4.67525 4.74570 4.86919 5.13545 5.28271 5.31587 5.39123 5.48562 5.64104 5.81987 6.03054 6.05332 6.20563 6.46300 6.85273 7.42362 8.42820 8.64092 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.002406 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.777640 B =11634.346726 C =12615.098729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.249 1.249 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.569 4.569 8 H 0.086 0.914 9 C 0.543 3.457 10 O -0.626 6.626 11 N -0.749 5.749 12 C 0.213 3.787 13 C 0.026 3.974 14 N -0.467 5.467 15 C 0.104 3.896 16 C 0.082 3.918 17 C -0.171 4.171 18 C -0.156 4.156 19 C -0.082 4.082 20 C -0.131 4.131 21 C -0.082 4.082 22 C -0.115 4.115 23 C 0.034 3.966 24 O -0.193 6.193 25 C -0.227 4.227 26 S 0.244 5.756 27 H 0.276 0.724 28 H 0.394 0.606 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.158 0.842 32 H 0.140 0.860 33 H 0.162 0.838 34 H 0.174 0.826 35 H 0.154 0.846 36 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.564 -22.637 4.870 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.172 1.172 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.605 4.605 8 H 0.105 0.895 9 C 0.348 3.652 10 O -0.513 6.513 11 N -0.405 5.405 12 C 0.085 3.915 13 C -0.252 4.252 14 N -0.183 5.183 15 C -0.027 4.027 16 C 0.033 3.967 17 C -0.192 4.192 18 C -0.157 4.157 19 C -0.100 4.100 20 C -0.149 4.149 21 C -0.100 4.100 22 C -0.133 4.133 23 C -0.013 4.013 24 O -0.095 6.095 25 C -0.368 4.368 26 S 0.500 5.500 27 H 0.086 0.914 28 H 0.227 0.773 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.176 0.824 32 H 0.158 0.842 33 H 0.180 0.820 34 H 0.191 0.809 35 H 0.172 0.828 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 14.251 -22.309 4.003 26.773 hybrid contribution 0.452 0.511 0.819 1.066 sum 14.703 -21.798 4.822 26.731 Atomic orbital electron populations 1.70177 1.09432 1.29040 1.36141 1.26956 0.95561 1.04877 0.91211 0.84959 0.79259 0.75402 0.78604 1.17186 1.19080 1.19441 1.21399 0.94702 0.89798 1.54615 0.89539 1.18576 0.86830 0.83776 0.76058 1.90568 1.15934 1.87609 1.57174 1.45834 1.09203 1.03724 1.81737 1.19305 0.90523 0.79290 1.02353 1.26670 1.03603 1.02539 0.92427 1.65864 1.10638 1.08680 1.33148 1.17265 0.99048 0.96145 0.90291 1.18888 0.94791 0.90663 0.92380 1.22718 1.03135 1.01823 0.91530 1.20170 1.01069 0.98544 0.95886 1.20688 0.98341 0.98318 0.92632 1.21248 0.96642 0.95186 1.01808 1.21485 0.98631 0.99528 0.90320 1.20388 0.98655 0.96303 0.97969 1.20151 1.00534 0.99110 0.81506 1.83852 1.52339 1.42386 1.30951 1.27708 1.07211 1.06727 0.95116 1.83854 1.34363 1.23054 1.08699 0.91414 0.77304 0.90306 0.92050 0.82429 0.84226 0.82047 0.80864 0.82791 0.77079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.72 11.83 21.83 0.26 -49.46 16 2 C 0.03 1.63 5.50 85.30 0.47 2.10 16 3 Si 1.00 40.79 29.56 68.60 2.03 42.82 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.57 -32.12 9.54 24.83 0.24 -31.88 16 8 H 0.09 4.42 7.85 -2.91 -0.02 4.39 16 9 C 0.54 31.35 7.75 86.36 0.67 32.02 16 10 O -0.63 -41.50 15.02 -4.30 -0.06 -41.56 16 11 N -0.75 -34.05 5.54 -471.15 -2.61 -36.67 16 12 C 0.21 8.39 6.24 85.63 0.53 8.92 16 13 C 0.03 0.83 6.73 88.56 0.60 1.42 16 14 N -0.47 -15.75 10.36 -180.86 -1.87 -17.63 16 15 C 0.10 3.05 6.68 40.82 0.27 3.32 16 16 C 0.08 2.41 7.02 24.16 0.17 2.58 16 17 C -0.17 -4.97 10.90 23.79 0.26 -4.71 16 18 C -0.16 -3.91 6.38 -20.23 -0.13 -4.04 16 19 C -0.08 -1.53 10.06 22.24 0.22 -1.31 16 20 C -0.13 -1.68 9.98 22.04 0.22 -1.46 16 21 C -0.08 -0.93 10.01 22.31 0.22 -0.71 16 22 C -0.11 -1.84 10.07 22.35 0.22 -1.62 16 23 C 0.03 0.81 7.40 23.00 0.17 0.98 16 24 O -0.19 -5.16 10.49 -12.79 -0.13 -5.29 16 25 C -0.23 -5.19 11.13 67.10 0.75 -4.44 16 26 S 0.24 5.68 23.16 -56.49 -1.31 4.37 16 27 H 0.28 15.10 8.29 -92.71 -0.77 14.33 16 28 H 0.39 16.03 8.44 -92.71 -0.78 15.25 16 29 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.16 4.64 8.06 -2.91 -0.02 4.62 16 32 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 35 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.21 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -79.07 341.91 1.55 -77.52 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.37 Total: 24.71 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 4.89 Total: 1.19 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -4.23 Total: -103.76 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -0.20 Total: -46.86 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -1.31 Total: 4.37 kcal Total: -79.07 1.55 -77.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358641701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.627 kcal (2) G-P(sol) polarization free energy of solvation -79.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds