Wall clock time and date at job start Tue Mar 31 2020 14:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48501 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47181 * 300.00027 * 3 2 1 6 6 H 1.48498 * 109.47364 * 59.99940 * 3 2 1 7 7 C 1.37875 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00092 * 0.27622 * 7 2 1 10 10 H 1.09010 * 109.49735 * 59.72563 * 9 7 2 11 11 C 1.53040 * 109.49467 * 179.78333 * 9 7 2 12 12 C 1.53049 * 109.53683 * 181.31702 * 11 9 7 13 13 C 1.53194 * 109.30863 * 298.63936 * 12 11 9 14 14 N 1.46917 * 108.77928 * 54.63544 * 13 12 11 15 15 C 1.34779 * 120.63453 * 126.38209 * 14 13 12 16 16 O 1.21522 * 120.00325 * 176.03537 * 15 14 13 17 17 C 1.48072 * 119.99772 * 356.04680 * 15 14 13 18 18 C 1.39815 * 120.93035 * 53.26404 * 17 15 14 19 19 C 1.38260 * 119.00994 * 179.97438 * 18 17 15 20 20 Cl 1.73592 * 119.54685 * 179.97438 * 19 18 17 21 21 N 1.31928 * 120.90210 * 359.97365 * 19 18 17 22 22 C 1.31779 * 122.05530 * 0.02643 * 21 19 18 23 23 C 1.38312 * 120.89441 * 359.73818 * 22 21 19 24 24 Cl 1.73594 * 120.50681 * 180.28692 * 23 22 21 25 25 C 1.46940 * 118.76600 * 306.41177 * 14 13 12 26 26 H 0.96999 * 119.99903 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46625 * 301.33686 * 11 9 7 28 28 H 1.09000 * 109.45838 * 61.30400 * 11 9 7 29 29 H 1.08996 * 109.49289 * 58.58648 * 12 11 9 30 30 H 1.09001 * 109.49667 * 178.69008 * 12 11 9 31 31 H 1.09002 * 109.58354 * 174.42251 * 13 12 11 32 32 H 1.09001 * 109.58844 * 294.84096 * 13 12 11 33 33 H 1.08005 * 120.49135 * 359.95129 * 18 17 15 34 34 H 1.08008 * 119.55700 * 180.02562 * 22 21 19 35 35 H 1.09003 * 109.55313 * 293.78185 * 25 14 13 36 36 H 1.08999 * 109.61750 * 173.36054 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 -0.0052 10 1 0.6241 -2.5534 -0.8954 11 6 2.2450 -3.6628 -0.0088 12 6 1.4810 -4.9884 -0.0477 13 6 0.6045 -5.1049 1.2033 14 7 -0.2541 -3.9160 1.2916 15 6 -1.5907 -4.0414 1.4118 16 8 -2.2832 -3.0534 1.5563 17 6 -2.2152 -5.3833 1.3679 18 6 -1.7788 -6.4070 2.2143 19 6 -2.3905 -7.6447 2.1403 20 17 -1.8593 -8.9260 3.1841 21 7 -3.3724 -7.8653 1.2871 22 6 -3.8141 -6.9289 0.4719 23 6 -3.2628 -5.6605 0.4821 24 17 -3.8575 -4.4324 -0.5910 25 6 0.3713 -2.5871 1.2458 26 1 -0.4850 0.8400 -0.0004 27 1 2.8880 -3.5885 -0.8856 28 1 2.8552 -3.6218 0.8935 29 1 0.8516 -5.0195 -0.9371 30 1 2.1897 -5.8161 -0.0737 31 1 -0.0153 -5.9988 1.1333 32 1 1.2375 -5.1651 2.0887 33 1 -0.9756 -6.2336 2.9152 34 1 -4.6208 -7.1536 -0.2103 35 1 0.9848 -2.4418 2.1350 36 1 -0.4019 -1.8200 1.2035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397661808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:32 Heat of formation + Delta-G solvation = -10.828328 kcal Electronic energy + Delta-G solvation = -23588.259042 eV Core-core repulsion = 19931.139324 eV Total energy + Delta-G solvation = -3657.119719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.95128 -39.20661 -37.16449 -36.80352 -36.58024 -33.84159 -32.78103 -31.79159 -31.19124 -29.84159 -26.01513 -25.19965 -24.05702 -23.60407 -21.93170 -20.44385 -18.93486 -17.71995 -17.23669 -16.69839 -16.34850 -16.00378 -15.25676 -14.96016 -14.66526 -14.55304 -14.23394 -13.81797 -13.48379 -12.96637 -12.77594 -12.68141 -12.65648 -12.17665 -11.98649 -11.73267 -11.54411 -11.22436 -11.11447 -11.02717 -10.61793 -10.52927 -10.35517 -10.29785 -10.04656 -9.98326 -9.48156 -9.20926 -9.11343 -8.99474 -8.51028 -7.94023 -6.06440 -4.15175 0.33556 0.46706 1.34573 1.91354 2.81166 3.11712 3.26792 3.35344 3.37909 3.42541 4.01479 4.31382 4.35887 4.39271 4.45440 5.02711 5.11044 5.20492 5.24577 5.29425 5.38438 5.55718 5.80227 5.86687 6.05930 6.20942 6.49933 6.55057 6.74305 6.87341 6.99268 7.08690 7.16684 7.52969 7.76966 7.87877 8.03636 8.29013 8.53251 8.89120 9.51161 10.99079 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.003901 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.704126 B = 7176.027783 C = 8134.764806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.098 3.902 14 N -0.590 5.590 15 C 0.546 3.454 16 O -0.504 6.504 17 C -0.047 4.047 18 C -0.118 4.118 19 C 0.171 3.829 20 Cl -0.019 7.019 21 N -0.457 5.457 22 C 0.132 3.868 23 C -0.055 4.055 24 Cl -0.013 7.013 25 C 0.113 3.887 26 H 0.264 0.736 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.048 0.952 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 -16.432 2.926 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.025 4.025 14 N -0.322 5.322 15 C 0.330 3.670 16 O -0.379 6.379 17 C -0.059 4.059 18 C -0.140 4.140 19 C 0.007 3.993 20 Cl 0.010 6.990 21 N -0.168 5.168 22 C -0.027 4.027 23 C -0.085 4.085 24 Cl 0.017 6.983 25 C -0.006 4.006 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.177 0.823 34 H 0.198 0.802 35 H 0.066 0.934 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.168 -16.559 2.993 17.603 hybrid contribution 0.850 1.528 0.019 1.748 sum -4.319 -15.031 3.011 15.927 Atomic orbital electron populations 1.69880 1.05753 1.26858 1.49277 1.25049 0.94884 0.99311 0.94718 0.86532 0.80060 0.83725 0.77682 1.19761 1.20989 1.20933 1.21096 0.92982 0.89969 1.51900 0.92208 1.18984 0.92621 0.92461 0.93867 0.95183 1.21636 0.98565 0.93855 1.00800 1.21948 0.98625 0.99383 0.97223 1.21935 0.93648 0.87736 0.99230 1.48498 1.04445 1.09662 1.69644 1.17841 0.83127 0.86716 0.79304 1.90867 1.61533 1.37240 1.48234 1.20642 0.94756 0.95923 0.94591 1.22060 1.01141 0.90491 1.00279 1.21553 0.94253 0.89135 0.94359 1.98422 1.87766 1.50213 1.62644 1.67012 1.11116 1.34380 1.04315 1.22683 0.98234 0.85939 0.95798 1.22255 0.97079 0.93013 0.96139 1.98460 1.86389 1.52164 1.61330 1.22447 0.98817 0.80349 0.99018 0.92625 0.92811 0.93016 0.92098 0.91953 0.91116 0.91253 0.82256 0.80248 0.93390 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.88 11.40 55.43 0.63 -24.25 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -13.59 8.56 -34.44 -0.29 -13.89 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.94 2.25 -91.66 -0.21 0.73 16 10 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 11 C -0.11 -2.08 5.11 -26.69 -0.14 -2.22 16 12 C -0.13 -2.04 6.08 -26.61 -0.16 -2.20 16 13 C 0.10 1.42 5.55 -3.71 -0.02 1.40 16 14 N -0.59 -11.10 2.97 -173.79 -0.52 -11.61 16 15 C 0.55 10.40 6.74 -12.22 -0.08 10.32 16 16 O -0.50 -11.58 15.65 5.35 0.08 -11.50 16 17 C -0.05 -0.70 4.93 -104.63 -0.52 -1.22 16 18 C -0.12 -1.44 7.30 -38.98 -0.28 -1.72 16 19 C 0.17 1.99 7.27 -17.50 -0.13 1.86 16 20 Cl -0.02 -0.19 29.10 -51.86 -1.51 -1.70 16 21 N -0.46 -5.50 10.31 -10.38 -0.11 -5.61 16 22 C 0.13 1.49 10.98 -17.55 -0.19 1.30 16 23 C -0.05 -0.76 6.37 -38.91 -0.25 -1.00 16 24 Cl -0.01 -0.19 27.53 -51.86 -1.43 -1.62 16 25 C 0.11 2.58 5.39 -3.71 -0.02 2.56 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.88 4.70 -51.93 -0.24 0.64 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.16 1.66 7.36 -52.48 -0.39 1.27 16 34 H 0.18 1.45 8.06 -52.48 -0.42 1.02 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.13 3.37 5.16 -51.93 -0.27 3.10 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -29.67 327.99 -9.13 -38.80 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.82 Total: -0.69 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.38 Total: -2.47 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.01 Total: -41.47 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -2.94 Total: -3.32 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.67 -9.13 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397661808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.967 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds