Wall clock time and date at job start Tue Mar 31 2020 14:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48501 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47181 * 300.00027 * 3 2 1 6 6 H 1.48498 * 109.47364 * 59.99940 * 3 2 1 7 7 C 1.37875 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00092 * 0.27622 * 7 2 1 10 10 H 1.09010 * 109.49735 * 59.72563 * 9 7 2 11 11 C 1.53040 * 109.49467 * 179.78333 * 9 7 2 12 12 C 1.53049 * 109.53683 * 181.31702 * 11 9 7 13 13 C 1.53194 * 109.30863 * 298.63936 * 12 11 9 14 14 N 1.46917 * 108.77928 * 54.63544 * 13 12 11 15 15 C 1.34779 * 120.63453 * 126.38209 * 14 13 12 16 16 O 1.21522 * 120.00325 * 176.03537 * 15 14 13 17 17 C 1.48072 * 119.99772 * 356.04680 * 15 14 13 18 18 C 1.39815 * 120.93035 * 53.26404 * 17 15 14 19 19 C 1.38260 * 119.00994 * 179.97438 * 18 17 15 20 20 Cl 1.73592 * 119.54685 * 179.97438 * 19 18 17 21 21 N 1.31928 * 120.90210 * 359.97365 * 19 18 17 22 22 C 1.31779 * 122.05530 * 0.02643 * 21 19 18 23 23 C 1.38312 * 120.89441 * 359.73818 * 22 21 19 24 24 Cl 1.73594 * 120.50681 * 180.28692 * 23 22 21 25 25 C 1.46940 * 118.76600 * 306.41177 * 14 13 12 26 26 H 0.96999 * 119.99903 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46625 * 301.33686 * 11 9 7 28 28 H 1.09000 * 109.45838 * 61.30400 * 11 9 7 29 29 H 1.08996 * 109.49289 * 58.58648 * 12 11 9 30 30 H 1.09001 * 109.49667 * 178.69008 * 12 11 9 31 31 H 1.09002 * 109.58354 * 174.42251 * 13 12 11 32 32 H 1.09001 * 109.58844 * 294.84096 * 13 12 11 33 33 H 1.08005 * 120.49135 * 359.95129 * 18 17 15 34 34 H 1.08008 * 119.55700 * 180.02562 * 22 21 19 35 35 H 1.09003 * 109.55313 * 293.78185 * 25 14 13 36 36 H 1.08999 * 109.61750 * 173.36054 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 -0.0052 10 1 0.6241 -2.5534 -0.8954 11 6 2.2450 -3.6628 -0.0088 12 6 1.4810 -4.9884 -0.0477 13 6 0.6045 -5.1049 1.2033 14 7 -0.2541 -3.9160 1.2916 15 6 -1.5907 -4.0414 1.4118 16 8 -2.2832 -3.0534 1.5563 17 6 -2.2152 -5.3833 1.3679 18 6 -1.7788 -6.4070 2.2143 19 6 -2.3905 -7.6447 2.1403 20 17 -1.8593 -8.9260 3.1841 21 7 -3.3724 -7.8653 1.2871 22 6 -3.8141 -6.9289 0.4719 23 6 -3.2628 -5.6605 0.4821 24 17 -3.8575 -4.4324 -0.5910 25 6 0.3713 -2.5871 1.2458 26 1 -0.4850 0.8400 -0.0004 27 1 2.8880 -3.5885 -0.8856 28 1 2.8552 -3.6218 0.8935 29 1 0.8516 -5.0195 -0.9371 30 1 2.1897 -5.8161 -0.0737 31 1 -0.0153 -5.9988 1.1333 32 1 1.2375 -5.1651 2.0887 33 1 -0.9756 -6.2336 2.9152 34 1 -4.6208 -7.1536 -0.2103 35 1 0.9848 -2.4418 2.1350 36 1 -0.4019 -1.8200 1.2035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397661808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:31 Heat of formation + Delta-G solvation = -28.351125 kcal Electronic energy + Delta-G solvation = -23589.018888 eV Core-core repulsion = 19931.139324 eV Total energy + Delta-G solvation = -3657.879564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.08869 -40.56040 -38.48089 -37.97907 -37.63695 -35.49628 -34.20999 -33.27349 -32.18184 -31.51346 -27.51140 -26.89308 -25.17979 -24.82832 -23.47003 -21.88304 -20.40722 -19.04965 -18.39212 -18.16562 -17.76281 -17.33633 -16.60656 -16.49750 -16.05309 -15.72337 -15.50249 -15.22079 -14.93417 -14.57087 -14.32157 -14.00446 -13.76593 -13.58384 -13.52592 -12.91846 -12.74862 -12.63083 -12.48017 -12.30847 -12.27438 -12.24197 -11.93661 -11.66872 -11.56625 -11.14386 -11.06928 -10.95867 -10.64917 -10.52180 -10.07874 -9.52937 -8.11472 -6.27711 -0.72049 -0.51209 0.42338 0.85433 1.39183 1.42591 1.46332 1.53648 1.90880 2.20002 2.42250 3.01430 3.17094 3.24471 3.36821 3.38646 3.94959 4.01269 4.10867 4.20901 4.31078 4.35021 4.55345 4.69711 4.75160 4.82096 4.88350 5.07415 5.20716 5.24243 5.33073 5.47982 5.59911 5.88733 5.97639 6.21823 6.31505 6.45122 6.84463 7.04814 7.42795 8.92191 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.003901 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.704126 B = 7176.027783 C = 8134.764806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.013 1.013 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.093 3.907 14 N -0.593 5.593 15 C 0.543 3.457 16 O -0.556 6.556 17 C -0.061 4.061 18 C -0.109 4.109 19 C 0.175 3.825 20 Cl 0.003 6.997 21 N -0.459 5.459 22 C 0.149 3.851 23 C -0.065 4.065 24 Cl -0.034 7.034 25 C 0.127 3.873 26 H 0.259 0.741 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.180 0.820 34 H 0.213 0.787 35 H 0.046 0.954 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 -19.342 3.686 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.005 0.995 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.028 4.028 14 N -0.324 5.324 15 C 0.330 3.670 16 O -0.435 6.435 17 C -0.073 4.073 18 C -0.131 4.131 19 C 0.011 3.989 20 Cl 0.032 6.968 21 N -0.170 5.170 22 C -0.009 4.009 23 C -0.095 4.095 24 Cl -0.005 7.005 25 C 0.005 3.995 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.197 0.803 34 H 0.229 0.771 35 H 0.065 0.935 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.972 -19.523 3.753 20.273 hybrid contribution 0.492 2.329 -0.191 2.388 sum -3.480 -17.194 3.562 17.900 Atomic orbital electron populations 1.70073 1.07340 1.27178 1.50679 1.25840 0.95502 1.02746 0.94603 0.85555 0.79370 0.79694 0.77350 1.18430 1.21093 1.20897 1.21526 0.93327 0.91347 1.50967 0.91894 1.18911 0.93090 0.93864 0.92222 0.99505 1.21521 0.97661 0.93835 1.01252 1.21917 0.98973 0.98610 0.96997 1.22289 0.93716 0.86723 1.00092 1.48463 1.05125 1.09543 1.69298 1.18381 0.82845 0.87899 0.77913 1.90832 1.62649 1.39572 1.50402 1.20276 0.95866 0.94410 0.96769 1.22150 1.01473 0.89793 0.99653 1.21701 0.93641 0.89442 0.94068 1.98439 1.87465 1.49056 1.61845 1.67166 1.11175 1.34274 1.04400 1.23123 0.97978 0.84401 0.95400 1.22417 0.97376 0.93550 0.96181 1.98454 1.86643 1.53355 1.62047 1.21836 0.97335 0.81806 0.98478 0.93153 0.92935 0.91928 0.93442 0.87597 0.88396 0.88539 0.80274 0.77054 0.93530 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.33 11.40 21.45 0.24 -54.08 16 2 C 0.01 0.70 5.31 84.65 0.45 1.15 16 3 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.53 -28.45 8.56 25.60 0.22 -28.24 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.04 1.86 2.25 -11.47 -0.03 1.83 16 10 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 11 C -0.11 -3.83 5.11 30.62 0.16 -3.67 16 12 C -0.13 -3.54 6.08 30.68 0.19 -3.36 16 13 C 0.09 2.46 5.55 86.36 0.48 2.94 16 14 N -0.59 -22.36 2.97 -822.05 -2.44 -24.80 16 15 C 0.54 21.09 6.74 86.85 0.59 21.68 16 16 O -0.56 -26.98 15.65 -3.79 -0.06 -27.04 16 17 C -0.06 -1.77 4.93 -19.87 -0.10 -1.87 16 18 C -0.11 -2.37 7.30 22.66 0.17 -2.20 16 19 C 0.18 3.51 7.27 84.68 0.62 4.12 16 20 Cl 0.00 0.05 29.10 -2.72 -0.08 -0.03 16 21 N -0.46 -9.58 10.31 -186.76 -1.93 -11.51 16 22 C 0.15 3.00 10.98 84.72 0.93 3.93 16 23 C -0.07 -1.74 6.37 22.71 0.14 -1.59 16 24 Cl -0.03 -1.05 27.53 -2.72 -0.07 -1.13 16 25 C 0.13 6.02 5.39 86.36 0.47 6.48 16 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.10 2.09 4.70 -2.39 -0.01 2.08 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.18 3.09 7.36 -2.91 -0.02 3.07 16 34 H 0.21 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 4.58 5.16 -2.39 -0.01 4.57 16 Total: -1.00 -69.00 327.99 3.09 -65.91 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.12 Total: 6.02 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 4.27 Total: 1.20 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -4.12 Total: -90.40 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.06 Total: -27.04 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.15 Total: -1.16 kcal Total: -69.00 3.09 -65.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397661808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.562 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds