Wall clock time and date at job start Tue Mar 31 2020 14:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99535 * 2 1 4 4 H 1.48499 * 109.47444 * 90.00490 * 3 2 1 5 5 H 1.48509 * 109.46544 * 209.99928 * 3 2 1 6 6 H 1.48492 * 109.47020 * 329.99783 * 3 2 1 7 7 C 1.37876 * 120.00243 * 180.27286 * 2 1 3 8 8 H 1.07997 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00160 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.49721 * 59.93005 * 9 7 2 11 11 C 1.53035 * 109.49843 * 179.97438 * 9 7 2 12 12 C 1.53042 * 109.53671 * 181.31325 * 11 9 7 13 13 C 1.53193 * 109.31823 * 298.63556 * 12 11 9 14 14 N 1.46930 * 108.77247 * 54.63067 * 13 12 11 15 15 C 1.34773 * 120.62465 * 126.39575 * 14 13 12 16 16 O 1.21509 * 120.00591 * 354.17955 * 15 14 13 17 17 C 1.48167 * 119.99644 * 174.18338 * 15 14 13 18 18 C 1.39790 * 120.90183 * 319.99746 * 17 15 14 19 19 C 1.38296 * 119.01369 * 179.79969 * 18 17 15 20 20 Cl 1.73601 * 119.55543 * 180.22997 * 19 18 17 21 21 N 1.31921 * 120.88219 * 0.49415 * 19 18 17 22 22 C 1.31919 * 122.00983 * 359.73057 * 21 19 18 23 23 Cl 1.73608 * 119.55909 * 180.02562 * 22 21 19 24 24 C 1.38283 * 120.88479 * 0.03180 * 22 21 19 25 25 C 1.46924 * 118.73973 * 306.39803 * 14 13 12 26 26 H 0.96999 * 120.00279 * 359.72089 * 1 2 3 27 27 H 1.09000 * 109.46462 * 301.33364 * 11 9 7 28 28 H 1.08996 * 109.46321 * 61.29953 * 11 9 7 29 29 H 1.09003 * 109.49582 * 58.58654 * 12 11 9 30 30 H 1.09006 * 109.49700 * 178.68124 * 12 11 9 31 31 H 1.08993 * 109.59231 * 174.42083 * 13 12 11 32 32 H 1.09002 * 109.58083 * 294.84918 * 13 12 11 33 33 H 1.07997 * 120.49726 * 0.03128 * 18 17 15 34 34 H 1.08002 * 120.49251 * 179.97438 * 24 22 21 35 35 H 1.09001 * 109.58505 * 293.82048 * 25 14 13 36 36 H 1.08998 * 109.58663 * 173.39648 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6526 -0.7000 7 6 2.0046 -1.1940 -0.0057 8 1 3.0846 -1.1939 -0.0061 9 6 1.2512 -2.4991 -0.0125 10 1 0.6238 -2.5524 -0.9022 11 6 2.2452 -3.6627 -0.0185 12 6 1.4812 -4.9882 -0.0585 13 6 0.6060 -5.1066 1.1931 14 7 -0.2526 -3.9177 1.2839 15 6 -1.5890 -4.0436 1.4053 16 8 -2.1048 -5.1415 1.3345 17 6 -2.4291 -2.8431 1.6251 18 6 -2.0077 -1.8181 2.4771 19 6 -2.8210 -0.7131 2.6506 20 17 -2.3087 0.5709 3.7007 21 7 -3.9832 -0.6241 2.0327 22 6 -4.4197 -1.5708 1.2244 23 17 -5.9594 -1.3875 0.4435 24 6 -3.6674 -2.7074 0.9908 25 6 0.3733 -2.5892 1.2397 26 1 -0.4850 0.8400 0.0041 27 1 2.8875 -3.5872 -0.8960 28 1 2.8563 -3.6230 0.8831 29 1 0.8510 -5.0182 -0.9473 30 1 2.1900 -5.8159 -0.0864 31 1 -0.0138 -6.0004 1.1225 32 1 1.2399 -5.1679 2.0778 33 1 -1.0594 -1.8862 2.9893 34 1 -4.0311 -3.4787 0.3281 35 1 0.9882 -2.4453 2.1281 36 1 -0.4000 -1.8221 1.1998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397688260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:39 Heat of formation + Delta-G solvation = -13.934824 kcal Electronic energy + Delta-G solvation = -23928.577373 eV Core-core repulsion = 20271.322947 eV Total energy + Delta-G solvation = -3657.254426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.71329 -39.19193 -36.97728 -36.81697 -36.36409 -33.37519 -33.26770 -31.81401 -30.82032 -29.88386 -25.81898 -25.23410 -23.78393 -23.64315 -21.87692 -20.33074 -19.06276 -17.52984 -16.98974 -16.51128 -16.04630 -15.80651 -15.17529 -14.99631 -14.66850 -14.59927 -14.25500 -13.79558 -13.43028 -12.96579 -12.68811 -12.42523 -12.35205 -12.15613 -12.00350 -11.49788 -11.21192 -11.11459 -11.09357 -11.01305 -10.68333 -10.52352 -10.38584 -10.18244 -10.16365 -9.84958 -9.63511 -9.24119 -9.13282 -8.73647 -8.60487 -8.06053 -6.21312 -4.26999 0.73696 0.82268 1.50455 2.03495 2.88435 3.19708 3.27350 3.30211 3.31710 3.65653 4.28531 4.45361 4.73536 4.83214 4.93992 5.12506 5.19415 5.37346 5.44424 5.52821 5.65098 5.89508 5.94330 6.11339 6.15462 6.20043 6.29999 6.47605 6.64694 6.72787 6.79309 7.00616 7.30650 7.43733 7.60577 7.79643 7.81283 8.17743 8.39135 8.76661 9.39941 10.85262 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009459 B = 0.006130 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.426808 B = 4566.323142 C = 6300.622205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.040 3.960 10 H 0.031 0.969 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.113 3.887 14 N -0.591 5.591 15 C 0.559 3.441 16 O -0.549 6.549 17 C -0.044 4.044 18 C -0.096 4.096 19 C 0.200 3.800 20 Cl -0.017 7.017 21 N -0.463 5.463 22 C 0.189 3.811 23 Cl -0.023 7.023 24 C -0.102 4.102 25 C 0.088 3.912 26 H 0.264 0.736 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.053 0.947 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.682 -4.453 4.582 7.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.199 1.199 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.049 0.951 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.322 5.322 15 C 0.346 3.654 16 O -0.428 6.428 17 C -0.055 4.055 18 C -0.117 4.117 19 C 0.035 3.965 20 Cl 0.012 6.988 21 N -0.177 5.177 22 C 0.024 3.976 23 Cl 0.006 6.994 24 C -0.124 4.124 25 C -0.033 4.033 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.177 0.823 34 H 0.175 0.825 35 H 0.071 0.929 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.663 -4.034 4.699 8.392 hybrid contribution 0.924 0.706 -0.203 1.180 sum -4.739 -3.329 4.497 7.332 Atomic orbital electron populations 1.69767 1.05787 1.27061 1.49934 1.24957 0.94901 0.99152 0.94516 0.86604 0.79919 0.83363 0.78290 1.20490 1.19918 1.21120 1.21082 0.93092 0.89850 1.51480 0.92192 1.18964 0.92788 0.92707 0.93450 0.95075 1.21640 0.98519 0.93949 1.00849 1.21951 0.98582 0.99077 0.97574 1.21596 0.92815 0.88202 0.98294 1.48463 1.04882 1.09972 1.68841 1.17959 0.82472 0.87349 0.77615 1.90733 1.73109 1.26619 1.52363 1.20164 0.94298 0.94924 0.96113 1.22150 1.00072 0.91351 0.98176 1.21091 0.90235 0.90298 0.94827 1.98415 1.88590 1.49555 1.62238 1.65992 1.14880 1.29426 1.07421 1.21083 0.90108 0.90950 0.95419 1.98404 1.25923 1.97612 1.77490 1.21817 0.92980 0.97516 1.00062 1.22915 0.99545 0.80554 1.00254 0.92570 0.92773 0.93011 0.92043 0.91903 0.89774 0.91660 0.82291 0.82528 0.92877 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.36 11.40 55.43 0.63 -21.73 16 2 C 0.07 1.66 5.31 -17.82 -0.09 1.57 16 3 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -12.56 8.56 -34.44 -0.29 -12.85 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.04 0.88 2.25 -91.65 -0.21 0.67 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.04 5.11 -26.69 -0.14 -2.18 16 12 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 13 C 0.11 1.79 6.44 -3.71 -0.02 1.76 16 14 N -0.59 -10.76 2.97 -173.76 -0.52 -11.28 16 15 C 0.56 10.41 7.38 -12.18 -0.09 10.32 16 16 O -0.55 -10.97 16.37 5.36 0.09 -10.88 16 17 C -0.04 -0.76 5.15 -104.66 -0.54 -1.30 16 18 C -0.10 -1.64 7.26 -38.98 -0.28 -1.92 16 19 C 0.20 3.42 7.27 -17.49 -0.13 3.29 16 20 Cl -0.02 -0.26 29.10 -51.86 -1.51 -1.77 16 21 N -0.46 -8.05 10.29 -7.54 -0.08 -8.13 16 22 C 0.19 3.07 7.27 -17.50 -0.13 2.94 16 23 Cl -0.02 -0.31 29.10 -51.86 -1.51 -1.82 16 24 C -0.10 -1.66 9.53 -38.98 -0.37 -2.03 16 25 C 0.09 1.76 3.91 -3.71 -0.01 1.75 16 26 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.31 7.00 -51.93 -0.36 0.95 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.16 2.58 6.65 -52.49 -0.35 2.23 16 34 H 0.16 2.29 8.06 -52.49 -0.42 1.86 16 35 H 0.05 1.05 8.13 -51.93 -0.42 0.62 16 36 H 0.12 2.64 2.86 -51.93 -0.15 2.49 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -26.04 329.21 -9.21 -35.25 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -3.78 Total: 0.92 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.47 Total: -0.24 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.04 Total: -41.14 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -3.02 Total: -3.59 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.04 -9.21 -35.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397688260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.314 kcal (2) G-P(sol) polarization free energy of solvation -26.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds