Wall clock time and date at job start Tue Mar 31 2020 14:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99535 * 2 1 4 4 H 1.48499 * 109.47444 * 90.00490 * 3 2 1 5 5 H 1.48509 * 109.46544 * 209.99928 * 3 2 1 6 6 H 1.48492 * 109.47020 * 329.99783 * 3 2 1 7 7 C 1.37876 * 120.00243 * 180.27286 * 2 1 3 8 8 H 1.07997 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00160 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.49721 * 59.93005 * 9 7 2 11 11 C 1.53035 * 109.49843 * 179.97438 * 9 7 2 12 12 C 1.53042 * 109.53671 * 181.31325 * 11 9 7 13 13 C 1.53193 * 109.31823 * 298.63556 * 12 11 9 14 14 N 1.46930 * 108.77247 * 54.63067 * 13 12 11 15 15 C 1.34773 * 120.62465 * 126.39575 * 14 13 12 16 16 O 1.21509 * 120.00591 * 354.17955 * 15 14 13 17 17 C 1.48167 * 119.99644 * 174.18338 * 15 14 13 18 18 C 1.39790 * 120.90183 * 319.99746 * 17 15 14 19 19 C 1.38296 * 119.01369 * 179.79969 * 18 17 15 20 20 Cl 1.73601 * 119.55543 * 180.22997 * 19 18 17 21 21 N 1.31921 * 120.88219 * 0.49415 * 19 18 17 22 22 C 1.31919 * 122.00983 * 359.73057 * 21 19 18 23 23 Cl 1.73608 * 119.55909 * 180.02562 * 22 21 19 24 24 C 1.38283 * 120.88479 * 0.03180 * 22 21 19 25 25 C 1.46924 * 118.73973 * 306.39803 * 14 13 12 26 26 H 0.96999 * 120.00279 * 359.72089 * 1 2 3 27 27 H 1.09000 * 109.46462 * 301.33364 * 11 9 7 28 28 H 1.08996 * 109.46321 * 61.29953 * 11 9 7 29 29 H 1.09003 * 109.49582 * 58.58654 * 12 11 9 30 30 H 1.09006 * 109.49700 * 178.68124 * 12 11 9 31 31 H 1.08993 * 109.59231 * 174.42083 * 13 12 11 32 32 H 1.09002 * 109.58083 * 294.84918 * 13 12 11 33 33 H 1.07997 * 120.49726 * 0.03128 * 18 17 15 34 34 H 1.08002 * 120.49251 * 179.97438 * 24 22 21 35 35 H 1.09001 * 109.58505 * 293.82048 * 25 14 13 36 36 H 1.08998 * 109.58663 * 173.39648 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6526 -0.7000 7 6 2.0046 -1.1940 -0.0057 8 1 3.0846 -1.1939 -0.0061 9 6 1.2512 -2.4991 -0.0125 10 1 0.6238 -2.5524 -0.9022 11 6 2.2452 -3.6627 -0.0185 12 6 1.4812 -4.9882 -0.0585 13 6 0.6060 -5.1066 1.1931 14 7 -0.2526 -3.9177 1.2839 15 6 -1.5890 -4.0436 1.4053 16 8 -2.1048 -5.1415 1.3345 17 6 -2.4291 -2.8431 1.6251 18 6 -2.0077 -1.8181 2.4771 19 6 -2.8210 -0.7131 2.6506 20 17 -2.3087 0.5709 3.7007 21 7 -3.9832 -0.6241 2.0327 22 6 -4.4197 -1.5708 1.2244 23 17 -5.9594 -1.3875 0.4435 24 6 -3.6674 -2.7074 0.9908 25 6 0.3733 -2.5892 1.2397 26 1 -0.4850 0.8400 0.0041 27 1 2.8875 -3.5872 -0.8960 28 1 2.8563 -3.6230 0.8831 29 1 0.8510 -5.0182 -0.9473 30 1 2.1900 -5.8159 -0.0864 31 1 -0.0138 -6.0004 1.1225 32 1 1.2399 -5.1679 2.0778 33 1 -1.0594 -1.8862 2.9893 34 1 -4.0311 -3.4787 0.3281 35 1 0.9882 -2.4453 2.1281 36 1 -0.4000 -1.8221 1.1998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397688260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:38 Heat of formation + Delta-G solvation = -26.645159 kcal Electronic energy + Delta-G solvation = -23929.128535 eV Core-core repulsion = 20271.322947 eV Total energy + Delta-G solvation = -3657.805588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07721 -40.58829 -38.48277 -38.04618 -37.61783 -35.09948 -34.66426 -33.25654 -32.16011 -31.45374 -27.23968 -26.98966 -25.17732 -24.97542 -23.35382 -21.83539 -20.47896 -18.96183 -18.39271 -18.21979 -17.47475 -17.15595 -16.60493 -16.48435 -16.30261 -15.90545 -15.62760 -15.20852 -14.90933 -14.58713 -14.25095 -13.86905 -13.60023 -13.53201 -13.42388 -12.86331 -12.75980 -12.68708 -12.38208 -12.31237 -12.29565 -12.22536 -11.85959 -11.65778 -11.59588 -11.22951 -11.14320 -10.89347 -10.69417 -10.47287 -10.01827 -9.55770 -8.09533 -6.19946 -0.60680 -0.47428 0.25022 0.75851 1.42709 1.46791 1.49047 1.54592 1.89614 2.31134 2.45762 3.03960 3.23610 3.44180 3.51415 3.64709 3.88962 4.07418 4.14759 4.19073 4.32448 4.57538 4.60210 4.69355 4.80049 4.85509 4.87346 5.06607 5.17926 5.23317 5.28309 5.56386 5.60429 5.86986 5.96901 6.13070 6.24934 6.42951 6.85691 6.94530 7.48686 8.93855 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009459 B = 0.006130 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.426808 B = 4566.323142 C = 6300.622205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.032 3.968 3 Si 0.937 3.063 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.292 1.292 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.037 3.963 10 H -0.007 1.007 11 C -0.107 4.107 12 C -0.125 4.125 13 C 0.108 3.892 14 N -0.592 5.592 15 C 0.560 3.440 16 O -0.564 6.564 17 C -0.058 4.058 18 C -0.097 4.097 19 C 0.190 3.810 20 Cl -0.007 7.007 21 N -0.474 5.474 22 C 0.185 3.815 23 Cl 0.000 7.000 24 C -0.102 4.102 25 C 0.098 3.902 26 H 0.260 0.740 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.163 0.837 34 H 0.171 0.829 35 H 0.058 0.942 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.226 -4.997 5.013 8.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.169 4.169 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.218 1.218 7 C -0.567 4.567 8 H 0.075 0.925 9 C 0.018 3.982 10 H 0.011 0.989 11 C -0.145 4.145 12 C -0.163 4.163 13 C -0.013 4.013 14 N -0.322 5.322 15 C 0.347 3.653 16 O -0.445 6.445 17 C -0.069 4.069 18 C -0.118 4.118 19 C 0.026 3.974 20 Cl 0.022 6.978 21 N -0.189 5.189 22 C 0.020 3.980 23 Cl 0.028 6.972 24 C -0.123 4.123 25 C -0.023 4.023 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.181 0.819 34 H 0.189 0.811 35 H 0.076 0.924 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.192 -4.589 5.133 8.623 hybrid contribution 0.760 0.880 -0.383 1.224 sum -4.432 -3.710 4.750 7.481 Atomic orbital electron populations 1.69882 1.06474 1.27018 1.50493 1.25488 0.95501 1.01339 0.94584 0.85870 0.78841 0.80569 0.78291 1.19907 1.19806 1.21839 1.21356 0.93130 0.91081 1.51173 0.92542 1.18910 0.93197 0.93476 0.92619 0.98921 1.21548 0.97859 0.93898 1.01174 1.21889 0.98730 0.98755 0.96894 1.21832 0.92855 0.87272 0.99345 1.48470 1.05074 1.10051 1.68558 1.18069 0.82584 0.87408 0.77240 1.90717 1.73305 1.27231 1.53285 1.20212 0.94846 0.94962 0.96906 1.22177 1.00205 0.91297 0.98156 1.21228 0.90343 0.90664 0.95121 1.98411 1.88506 1.49036 1.61854 1.66065 1.15100 1.29876 1.07817 1.21291 0.90918 0.90672 0.95134 1.98408 1.24289 1.97530 1.76938 1.22000 0.92557 0.97886 0.99876 1.22596 0.98977 0.81344 0.99369 0.93116 0.93106 0.92000 0.93478 0.88307 0.89326 0.89328 0.81904 0.81135 0.92400 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.54 11.40 21.45 0.24 -45.29 16 2 C 0.03 1.55 5.31 84.65 0.45 2.00 16 3 Si 0.94 40.17 29.54 68.60 2.03 42.19 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.53 -25.60 8.56 25.60 0.22 -25.38 16 8 H 0.06 2.72 7.74 -2.91 -0.02 2.69 16 9 C 0.04 1.62 2.25 -11.46 -0.03 1.60 16 10 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 11 C -0.11 -3.75 5.11 30.62 0.16 -3.60 16 12 C -0.12 -3.62 6.08 30.67 0.19 -3.43 16 13 C 0.11 3.18 6.44 86.36 0.56 3.73 16 14 N -0.59 -20.94 2.97 -821.96 -2.44 -23.38 16 15 C 0.56 20.45 7.38 86.88 0.64 21.09 16 16 O -0.56 -22.05 16.37 -3.74 -0.06 -22.11 16 17 C -0.06 -2.01 5.15 -19.89 -0.10 -2.12 16 18 C -0.10 -3.28 7.26 22.66 0.16 -3.12 16 19 C 0.19 6.45 7.27 84.69 0.62 7.06 16 20 Cl -0.01 -0.21 29.10 -2.72 -0.08 -0.28 16 21 N -0.47 -16.23 10.29 -177.77 -1.83 -18.06 16 22 C 0.18 5.85 7.27 84.69 0.62 6.47 16 23 Cl 0.00 -0.01 29.10 -2.72 -0.08 -0.09 16 24 C -0.10 -3.25 9.53 22.66 0.22 -3.03 16 25 C 0.10 3.90 3.91 86.36 0.34 4.24 16 26 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.09 2.57 7.00 -2.39 -0.02 2.55 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.16 5.25 6.65 -2.91 -0.02 5.23 16 34 H 0.17 4.84 8.06 -2.91 -0.02 4.82 16 35 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 36 H 0.11 4.78 2.86 -2.39 -0.01 4.77 16 Total: -1.00 -54.30 329.21 2.93 -51.36 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.13 Total: 10.15 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 4.03 Total: 5.52 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -4.03 Total: -86.74 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.06 Total: -22.11 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.16 Total: -0.37 kcal Total: -54.30 2.93 -51.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397688260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.717 kcal (2) G-P(sol) polarization free energy of solvation -54.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds