Wall clock time and date at job start Tue Mar 31 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47331 * 270.00416 * 3 2 1 5 5 H 1.48508 * 109.47118 * 30.00400 * 3 2 1 6 6 H 1.48494 * 109.47366 * 149.99983 * 3 2 1 7 7 C 1.37875 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00385 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00105 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49845 * 300.06719 * 9 7 2 11 11 C 1.53043 * 109.49647 * 180.02562 * 9 7 2 12 12 C 1.53046 * 109.53773 * 178.65281 * 11 9 7 13 13 C 1.53197 * 109.31203 * 61.36365 * 12 11 9 14 14 N 1.46924 * 108.77434 * 305.36722 * 13 12 11 15 15 C 1.34777 * 120.62729 * 233.60559 * 14 13 12 16 16 O 1.21516 * 119.99588 * 174.33537 * 15 14 13 17 17 C 1.48151 * 120.00250 * 354.33423 * 15 14 13 18 18 C 1.39797 * 120.90944 * 324.66255 * 17 15 14 19 19 C 1.38286 * 119.01910 * 179.74898 * 18 17 15 20 20 Cl 1.73603 * 119.55773 * 180.26739 * 19 18 17 21 21 N 1.31922 * 120.88092 * 0.53622 * 19 18 17 22 22 C 1.31917 * 122.01492 * 359.73509 * 21 19 18 23 23 Cl 1.73597 * 119.56403 * 180.02562 * 22 21 19 24 24 C 1.38288 * 120.87943 * 359.97438 * 22 21 19 25 25 C 1.46924 * 118.74127 * 53.60856 * 14 13 12 26 26 H 0.96999 * 120.00259 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.45637 * 58.63308 * 11 9 7 28 28 H 1.08995 * 109.45105 * 298.66484 * 11 9 7 29 29 H 1.08996 * 109.49619 * 181.31854 * 12 11 9 30 30 H 1.09001 * 109.49443 * 301.41551 * 12 11 9 31 31 H 1.09000 * 109.58012 * 65.15320 * 13 12 11 32 32 H 1.08998 * 109.58222 * 185.57902 * 13 12 11 33 33 H 1.08004 * 120.48744 * 0.02562 * 18 17 15 34 34 H 1.07998 * 120.49032 * 179.97438 * 24 22 21 35 35 H 1.08997 * 109.58876 * 186.59828 * 25 14 13 36 36 H 1.09000 * 109.58598 * 66.17661 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6236 -2.5571 0.8889 11 6 2.2450 -3.6629 -0.0005 12 6 1.4810 -4.9886 0.0334 13 6 0.6052 -5.1008 -1.2185 14 7 -0.2534 -3.9115 -1.3031 15 6 -1.5898 -4.0366 -1.4246 16 8 -2.2980 -3.0498 -1.3901 17 6 -2.1954 -5.3773 -1.6002 18 6 -1.5430 -6.3688 -2.3389 19 6 -2.1414 -7.6081 -2.4735 20 17 -1.3404 -8.8518 -3.3820 21 7 -3.3154 -7.8563 -1.9252 22 6 -3.9666 -6.9472 -1.2254 23 17 -5.5078 -7.3427 -0.5312 24 6 -3.4374 -5.6836 -1.0365 25 6 0.3726 -2.5832 -1.2528 26 1 -0.4850 0.8400 0.0004 27 1 2.8876 -3.5915 0.8770 28 1 2.8556 -3.6187 -0.9023 29 1 2.1897 -5.8163 0.0570 30 1 0.8511 -5.0228 0.9223 31 1 1.2387 -5.1578 -2.1037 32 1 -0.0146 -5.9949 -1.1518 33 1 -0.5836 -6.1711 -2.7939 34 1 -3.9761 -4.9441 -0.4628 35 1 -0.4006 -1.8162 -1.2089 36 1 0.9871 -2.4350 -2.1408 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397688279.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:42 Heat of formation + Delta-G solvation = -7.287071 kcal Electronic energy + Delta-G solvation = -23269.279269 eV Core-core repulsion = 19612.313111 eV Total energy + Delta-G solvation = -3656.966158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04539 -39.27662 -37.23075 -36.96875 -36.72663 -33.95210 -32.85298 -31.91311 -31.25774 -29.84190 -26.08063 -25.28508 -24.01256 -23.67633 -21.97330 -20.47817 -19.03798 -17.80334 -17.32428 -16.46990 -16.39567 -15.86892 -15.36746 -15.21929 -14.89030 -14.63009 -14.30068 -13.85463 -13.44909 -12.95696 -12.79857 -12.71896 -12.54562 -12.30969 -11.99362 -11.85224 -11.54622 -11.48174 -11.09712 -11.00069 -10.65687 -10.56307 -10.40883 -10.33630 -10.18193 -10.02057 -9.58498 -9.25615 -9.21036 -9.01954 -8.53750 -7.98910 -6.08073 -4.17141 0.32110 0.38045 1.10977 1.63104 2.73375 3.17423 3.27050 3.34132 3.36023 3.40835 4.14077 4.29916 4.36653 4.44408 4.56750 4.81259 5.08970 5.12298 5.22474 5.32228 5.50366 5.58181 5.75819 5.83702 6.02687 6.18306 6.47229 6.51714 6.71319 6.84775 6.94574 7.00822 7.04951 7.50001 7.74329 7.84718 7.99813 8.26515 8.47715 8.86945 9.49272 10.97336 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017599 B = 0.003390 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.641930 B = 8258.525596 C = 9305.073059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.091 3.909 14 N -0.590 5.590 15 C 0.546 3.454 16 O -0.512 6.512 17 C -0.044 4.044 18 C -0.127 4.127 19 C 0.187 3.813 20 Cl -0.015 7.015 21 N -0.466 5.466 22 C 0.190 3.810 23 Cl -0.013 7.013 24 C -0.101 4.101 25 C 0.111 3.889 26 H 0.264 0.736 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.126 0.874 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.944 -16.347 -4.176 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.049 0.951 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.032 4.032 14 N -0.322 5.322 15 C 0.331 3.669 16 O -0.388 6.388 17 C -0.056 4.056 18 C -0.149 4.149 19 C 0.023 3.977 20 Cl 0.014 6.986 21 N -0.180 5.180 22 C 0.025 3.975 23 Cl 0.016 6.984 24 C -0.123 4.123 25 C -0.008 4.008 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.182 0.818 34 H 0.182 0.818 35 H 0.143 0.857 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.891 -16.614 -4.281 17.840 hybrid contribution 0.741 1.300 0.051 1.497 sum -4.149 -15.314 -4.230 16.420 Atomic orbital electron populations 1.69870 1.05753 1.26999 1.49173 1.25052 0.94895 0.99327 0.94701 0.86576 0.79821 0.83367 0.78162 1.20603 1.21166 1.19901 1.21062 0.92959 0.89986 1.52049 0.92251 1.18978 0.92630 0.92473 0.93847 0.95139 1.21643 0.98579 0.93848 1.00839 1.21959 0.98649 0.99422 0.97197 1.22177 0.93736 0.87951 0.99303 1.48487 1.04568 1.09708 1.69462 1.17905 0.83086 0.86801 0.79098 1.90860 1.60476 1.37828 1.49677 1.20671 0.94039 0.95251 0.95611 1.22381 1.01809 0.91128 0.99555 1.21265 0.90569 0.89608 0.96288 1.98431 1.76079 1.53159 1.70947 1.66068 1.07610 1.35601 1.08682 1.21272 0.90375 0.89693 0.96136 1.98432 1.24200 1.94629 1.81161 1.22063 0.94831 0.95878 0.99493 1.22467 0.98873 0.80364 0.99123 0.92544 0.92775 0.93005 0.91841 0.92015 0.91173 0.90450 0.81753 0.81781 0.85655 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.64 11.40 55.43 0.63 -24.01 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.52 -13.47 8.56 -34.44 -0.29 -13.76 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.92 2.25 -91.65 -0.21 0.72 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.04 5.11 -26.69 -0.14 -2.18 16 12 C -0.13 -1.97 6.08 -26.61 -0.16 -2.13 16 13 C 0.09 1.26 4.83 -3.71 -0.02 1.24 16 14 N -0.59 -10.70 2.97 -173.77 -0.52 -11.21 16 15 C 0.55 10.01 7.43 -12.19 -0.09 9.92 16 16 O -0.51 -11.53 16.31 5.35 0.09 -11.44 16 17 C -0.04 -0.62 5.31 -104.66 -0.56 -1.18 16 18 C -0.13 -1.50 7.24 -38.98 -0.28 -1.78 16 19 C 0.19 2.20 7.27 -17.50 -0.13 2.07 16 20 Cl -0.01 -0.15 29.10 -51.86 -1.51 -1.66 16 21 N -0.47 -6.00 10.29 -7.55 -0.08 -6.08 16 22 C 0.19 2.37 7.27 -17.50 -0.13 2.24 16 23 Cl -0.01 -0.14 29.10 -51.86 -1.51 -1.65 16 24 C -0.10 -1.33 9.49 -38.98 -0.37 -1.70 16 25 C 0.11 2.48 5.41 -3.71 -0.02 2.46 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.08 0.90 4.45 -51.93 -0.23 0.67 16 33 H 0.17 1.65 6.14 -52.48 -0.32 1.33 16 34 H 0.16 2.08 8.05 -52.49 -0.42 1.66 16 35 H 0.13 3.31 5.12 -51.93 -0.27 3.05 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 328.34 15.07 4.95 4.95 Total: -1.00 -28.90 328.34 -9.19 -38.08 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -3.74 Total: 0.00 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.48 Total: -2.50 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.04 Total: -41.30 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -3.02 Total: -3.31 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.90 -9.19 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397688279.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.798 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds