Wall clock time and date at job start Tue Mar 31 2020 14:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47331 * 270.00416 * 3 2 1 5 5 H 1.48508 * 109.47118 * 30.00400 * 3 2 1 6 6 H 1.48494 * 109.47366 * 149.99983 * 3 2 1 7 7 C 1.37875 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00385 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00105 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49845 * 300.06719 * 9 7 2 11 11 C 1.53043 * 109.49647 * 180.02562 * 9 7 2 12 12 C 1.53046 * 109.53773 * 178.65281 * 11 9 7 13 13 C 1.53197 * 109.31203 * 61.36365 * 12 11 9 14 14 N 1.46924 * 108.77434 * 305.36722 * 13 12 11 15 15 C 1.34777 * 120.62729 * 233.60559 * 14 13 12 16 16 O 1.21516 * 119.99588 * 174.33537 * 15 14 13 17 17 C 1.48151 * 120.00250 * 354.33423 * 15 14 13 18 18 C 1.39797 * 120.90944 * 324.66255 * 17 15 14 19 19 C 1.38286 * 119.01910 * 179.74898 * 18 17 15 20 20 Cl 1.73603 * 119.55773 * 180.26739 * 19 18 17 21 21 N 1.31922 * 120.88092 * 0.53622 * 19 18 17 22 22 C 1.31917 * 122.01492 * 359.73509 * 21 19 18 23 23 Cl 1.73597 * 119.56403 * 180.02562 * 22 21 19 24 24 C 1.38288 * 120.87943 * 359.97438 * 22 21 19 25 25 C 1.46924 * 118.74127 * 53.60856 * 14 13 12 26 26 H 0.96999 * 120.00259 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.45637 * 58.63308 * 11 9 7 28 28 H 1.08995 * 109.45105 * 298.66484 * 11 9 7 29 29 H 1.08996 * 109.49619 * 181.31854 * 12 11 9 30 30 H 1.09001 * 109.49443 * 301.41551 * 12 11 9 31 31 H 1.09000 * 109.58012 * 65.15320 * 13 12 11 32 32 H 1.08998 * 109.58222 * 185.57902 * 13 12 11 33 33 H 1.08004 * 120.48744 * 0.02562 * 18 17 15 34 34 H 1.07998 * 120.49032 * 179.97438 * 24 22 21 35 35 H 1.08997 * 109.58876 * 186.59828 * 25 14 13 36 36 H 1.09000 * 109.58598 * 66.17661 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6236 -2.5571 0.8889 11 6 2.2450 -3.6629 -0.0005 12 6 1.4810 -4.9886 0.0334 13 6 0.6052 -5.1008 -1.2185 14 7 -0.2534 -3.9115 -1.3031 15 6 -1.5898 -4.0366 -1.4246 16 8 -2.2980 -3.0498 -1.3901 17 6 -2.1954 -5.3773 -1.6002 18 6 -1.5430 -6.3688 -2.3389 19 6 -2.1414 -7.6081 -2.4735 20 17 -1.3404 -8.8518 -3.3820 21 7 -3.3154 -7.8563 -1.9252 22 6 -3.9666 -6.9472 -1.2254 23 17 -5.5078 -7.3427 -0.5312 24 6 -3.4374 -5.6836 -1.0365 25 6 0.3726 -2.5832 -1.2528 26 1 -0.4850 0.8400 0.0004 27 1 2.8876 -3.5915 0.8770 28 1 2.8556 -3.6187 -0.9023 29 1 2.1897 -5.8163 0.0570 30 1 0.8511 -5.0228 0.9223 31 1 1.2387 -5.1578 -2.1037 32 1 -0.0146 -5.9949 -1.1518 33 1 -0.5836 -6.1711 -2.7939 34 1 -3.9761 -4.9441 -0.4628 35 1 -0.4006 -1.8162 -1.2089 36 1 0.9871 -2.4350 -2.1408 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397688279.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:41 Heat of formation + Delta-G solvation = -24.045410 kcal Electronic energy + Delta-G solvation = -23270.005965 eV Core-core repulsion = 19612.313111 eV Total energy + Delta-G solvation = -3657.692854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18110 -40.60294 -38.47943 -38.10336 -37.67052 -35.55780 -34.26969 -33.35908 -32.31159 -31.44766 -27.54872 -26.94115 -25.06144 -24.99043 -23.46509 -21.88636 -20.48110 -19.09152 -18.44895 -18.23241 -17.55448 -17.09354 -16.65090 -16.57973 -16.29783 -15.94961 -15.65207 -15.20800 -14.91696 -14.55510 -14.32173 -13.97173 -13.67462 -13.57234 -13.43254 -12.87706 -12.77211 -12.69567 -12.42273 -12.34205 -12.29641 -12.23508 -11.88370 -11.65035 -11.59085 -11.28006 -11.11121 -10.96234 -10.71495 -10.52071 -10.14222 -9.54156 -8.10519 -6.26970 -0.73965 -0.60703 0.18728 0.70129 1.41924 1.43655 1.49548 1.53519 1.86689 2.20331 2.43118 2.99266 3.18700 3.31476 3.38528 3.57756 3.79566 3.97498 4.05445 4.13106 4.31989 4.55523 4.57812 4.70347 4.75461 4.76867 4.83497 5.09217 5.21467 5.26023 5.34130 5.48089 5.60972 5.90043 5.98716 6.03303 6.32254 6.44220 6.85278 7.02590 7.43587 8.92872 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017599 B = 0.003390 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.641930 B = 8258.525596 C = 9305.073059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.037 3.963 10 H -0.013 1.013 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.086 3.914 14 N -0.592 5.592 15 C 0.544 3.456 16 O -0.568 6.568 17 C -0.052 4.052 18 C -0.113 4.113 19 C 0.189 3.811 20 Cl 0.009 6.991 21 N -0.471 5.471 22 C 0.190 3.810 23 Cl 0.001 6.999 24 C -0.103 4.103 25 C 0.124 3.876 26 H 0.260 0.740 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.188 0.812 34 H 0.161 0.839 35 H 0.080 0.920 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 -18.934 -5.137 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.018 3.982 10 H 0.005 0.995 11 C -0.143 4.143 12 C -0.166 4.166 13 C -0.035 4.035 14 N -0.323 5.323 15 C 0.331 3.669 16 O -0.447 6.447 17 C -0.064 4.064 18 C -0.134 4.134 19 C 0.024 3.976 20 Cl 0.037 6.963 21 N -0.186 5.186 22 C 0.026 3.974 23 Cl 0.029 6.971 24 C -0.125 4.125 25 C 0.003 3.997 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.205 0.795 34 H 0.179 0.821 35 H 0.098 0.902 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.371 -19.251 -5.240 20.234 hybrid contribution 0.272 2.023 0.353 2.072 sum -3.098 -17.228 -4.887 18.174 Atomic orbital electron populations 1.70065 1.07325 1.27273 1.50639 1.25839 0.95505 1.02741 0.94618 0.85606 0.78747 0.79338 0.78291 1.19980 1.21586 1.18851 1.21507 0.93334 0.91387 1.51049 0.91906 1.18922 0.93145 0.93879 0.92283 0.99515 1.21528 0.97660 0.93847 1.01288 1.21938 0.99028 0.98599 0.97057 1.22570 0.93829 0.86869 1.00260 1.48446 1.05176 1.09635 1.69008 1.18430 0.82806 0.87873 0.77768 1.90828 1.61692 1.40165 1.52056 1.20188 0.94757 0.93635 0.97797 1.22481 1.02267 0.90287 0.98326 1.21415 0.90202 0.90088 0.95858 1.98446 1.75490 1.52096 1.70220 1.66174 1.08081 1.35646 1.08671 1.21252 0.90853 0.89274 0.96042 1.98437 1.23229 1.94476 1.80919 1.22050 0.94618 0.96311 0.99540 1.21864 0.97400 0.81834 0.98623 0.93115 0.93033 0.91808 0.87433 0.93378 0.88096 0.87672 0.79505 0.82135 0.90175 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.74 11.40 21.45 0.24 -53.49 16 2 C 0.01 0.68 5.30 84.65 0.45 1.13 16 3 Si 0.95 42.89 29.54 68.60 2.03 44.91 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.53 -28.11 8.56 25.60 0.22 -27.89 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.04 1.75 2.25 -11.46 -0.03 1.73 16 10 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 11 C -0.11 -3.73 5.11 30.62 0.16 -3.57 16 12 C -0.13 -3.40 6.08 30.68 0.19 -3.22 16 13 C 0.09 2.10 4.83 86.36 0.42 2.52 16 14 N -0.59 -21.34 2.97 -821.98 -2.44 -23.78 16 15 C 0.54 20.30 7.43 86.88 0.65 20.95 16 16 O -0.57 -27.05 16.31 -3.76 -0.06 -27.11 16 17 C -0.05 -1.43 5.31 -19.89 -0.11 -1.54 16 18 C -0.11 -2.33 7.24 22.66 0.16 -2.17 16 19 C 0.19 3.87 7.27 84.69 0.62 4.49 16 20 Cl 0.01 0.14 29.10 -2.72 -0.08 0.06 16 21 N -0.47 -11.03 10.29 -177.79 -1.83 -12.86 16 22 C 0.19 4.48 7.27 84.69 0.62 5.09 16 23 Cl 0.00 0.01 29.10 -2.72 -0.08 -0.06 16 24 C -0.10 -2.68 9.49 22.66 0.21 -2.46 16 25 C 0.12 5.72 5.41 86.36 0.47 6.19 16 26 H 0.26 14.79 8.31 -92.71 -0.77 14.01 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.10 1.94 8.08 -2.39 -0.02 1.93 16 32 H 0.11 2.04 4.45 -2.39 -0.01 2.03 16 33 H 0.19 2.98 6.14 -2.91 -0.02 2.96 16 34 H 0.16 4.21 8.05 -2.91 -0.02 4.18 16 35 H 0.08 4.49 5.12 -2.39 -0.01 4.48 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -66.82 328.34 2.93 -63.90 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.13 Total: 7.19 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 4.02 Total: 1.25 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -4.03 Total: -90.14 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.06 Total: -27.11 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: 0.16 SS G_CDS: -0.16 Total: 0.00 kcal Total: -66.82 2.93 -63.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397688279.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.853 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds