Wall clock time and date at job start Tue Mar 31 2020 14:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99829 * 2 1 4 4 H 1.48504 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47377 * 299.99613 * 3 2 1 6 6 H 1.48503 * 109.47166 * 59.99766 * 3 2 1 7 7 C 1.37876 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99940 * 174.98470 * 7 2 1 9 9 C 1.50699 * 120.00160 * 354.98520 * 7 2 1 10 10 H 1.08997 * 109.49768 * 66.43843 * 9 7 2 11 11 C 1.53037 * 109.52385 * 186.52066 * 9 7 2 12 12 C 1.53042 * 109.53706 * 181.33486 * 11 9 7 13 13 C 1.53625 * 109.24170 * 298.50498 * 12 11 9 14 14 N 1.46929 * 108.53857 * 54.85976 * 13 12 11 15 15 C 1.34779 * 120.62946 * 126.36957 * 14 13 12 16 16 O 1.21519 * 120.00170 * 3.83673 * 15 14 13 17 17 C 1.48075 * 119.99865 * 183.83738 * 15 14 13 18 18 N 1.32814 * 119.73136 * 334.85380 * 17 15 14 19 19 C 1.31554 * 121.63466 * 180.02562 * 18 17 15 20 20 Cl 1.73601 * 119.54310 * 179.97438 * 19 18 17 21 21 C 1.38805 * 120.90992 * 359.97438 * 19 18 17 22 22 C 1.38453 * 119.36414 * 359.97438 * 21 19 18 23 23 C 1.38838 * 118.49558 * 0.02616 * 22 21 19 24 24 Cl 1.73597 * 120.47292 * 180.02562 * 23 22 21 25 25 C 1.46928 * 118.73889 * 306.09133 * 14 13 12 26 26 H 0.96996 * 120.00051 * 7.91439 * 1 2 3 27 27 H 1.09007 * 109.46193 * 301.34918 * 11 9 7 28 28 H 1.08995 * 109.46496 * 61.31382 * 11 9 7 29 29 H 1.08994 * 109.50278 * 58.58601 * 12 11 9 30 30 H 1.09008 * 109.49670 * 178.68564 * 12 11 9 31 31 H 1.08998 * 109.74067 * 295.12397 * 13 12 11 32 32 H 1.09000 * 109.66568 * 174.54733 * 13 12 11 33 33 H 1.08004 * 120.31800 * 180.02562 * 21 19 18 34 34 H 1.08002 * 120.75251 * 180.29576 * 22 21 19 35 35 H 1.09005 * 109.58720 * 173.64801 * 25 14 13 36 36 H 1.09001 * 109.58708 * 293.93343 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0814 -1.1959 -0.0812 9 6 1.2554 -2.4966 0.1152 10 1 0.6482 -2.6469 -0.7774 11 6 2.2522 -3.6493 0.2550 12 6 1.4928 -4.9754 0.3380 13 6 0.5895 -4.9646 1.5806 14 7 -0.2744 -3.7777 1.5198 15 6 -1.6129 -3.8966 1.6239 16 8 -2.1114 -4.9837 1.8392 17 6 -2.4759 -2.7025 1.4758 18 7 -1.9837 -1.4974 1.7389 19 6 -2.7170 -0.4116 1.6204 20 17 -2.0183 1.1366 1.9791 21 6 -4.0416 -0.4868 1.2125 22 6 -4.5949 -1.7234 0.9269 23 6 -3.7980 -2.8524 1.0605 24 17 -4.4389 -4.4284 0.7153 25 6 0.3490 -2.4582 1.3496 26 1 -0.4850 0.8320 -0.1157 27 1 2.9145 -3.6638 -0.6108 28 1 2.8423 -3.5114 1.1610 29 1 0.8835 -5.1024 -0.5567 30 1 2.2042 -5.7979 0.4140 31 1 1.2025 -4.9247 2.4810 32 1 -0.0259 -5.8642 1.5945 33 1 -4.6348 0.4108 1.1180 34 1 -5.6218 -1.8075 0.6031 35 1 -0.4252 -1.7034 1.2111 36 1 0.9407 -2.2169 2.2327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397714341.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:44 Heat of formation + Delta-G solvation = 9.155512 kcal Electronic energy + Delta-G solvation = -24442.943499 eV Core-core repulsion = 20786.690345 eV Total energy + Delta-G solvation = -3656.253154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56997 -38.80739 -36.85045 -36.37078 -36.09470 -33.14412 -33.00164 -31.63551 -30.73909 -29.60071 -25.54560 -24.98330 -23.64870 -23.37449 -21.69099 -20.22276 -18.84404 -17.25258 -16.94052 -16.34576 -16.23722 -15.50457 -15.01931 -14.92491 -14.49846 -13.90998 -13.72278 -13.61700 -13.10077 -12.90049 -12.63280 -12.44291 -12.22955 -12.01276 -11.82055 -11.24267 -11.01087 -10.98341 -10.85630 -10.76262 -10.47367 -10.37036 -10.21041 -10.04688 -9.85896 -9.59761 -9.43958 -8.98972 -8.62652 -8.49865 -8.10295 -7.73164 -5.98382 -4.04374 0.67218 1.08948 1.98712 2.32229 3.03919 3.27295 3.36809 3.40473 3.48962 3.91004 4.41803 4.48621 4.76085 4.81570 4.94004 5.27116 5.36489 5.57222 5.61472 5.66977 5.78307 5.83042 6.11612 6.18537 6.30616 6.41731 6.60264 6.73266 6.84937 7.03496 7.10459 7.38701 7.69480 7.72429 7.90160 8.06077 8.25568 8.49787 8.69590 8.95922 9.59310 11.04997 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010873 B = 0.007230 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.457926 B = 3871.827636 C = 6002.762271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.072 3.928 3 Si 0.883 3.117 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.039 3.961 10 H 0.022 0.978 11 C -0.112 4.112 12 C -0.132 4.132 13 C 0.112 3.888 14 N -0.580 5.580 15 C 0.562 3.438 16 O -0.542 6.542 17 C 0.118 3.882 18 N -0.386 5.386 19 C 0.196 3.804 20 Cl -0.011 7.011 21 C -0.136 4.136 22 C -0.068 4.068 23 C -0.050 4.050 24 Cl -0.027 7.027 25 C 0.071 3.929 26 H 0.262 0.738 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 -1.846 2.576 9.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.020 3.980 10 H 0.040 0.960 11 C -0.150 4.150 12 C -0.170 4.170 13 C -0.011 4.011 14 N -0.310 5.310 15 C 0.347 3.653 16 O -0.420 6.420 17 C -0.021 4.021 18 N -0.099 5.099 19 C 0.030 3.970 20 Cl 0.018 6.982 21 C -0.157 4.157 22 C -0.095 4.095 23 C -0.080 4.080 24 Cl 0.003 6.997 25 C -0.048 4.048 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.194 0.806 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.490 -2.231 3.072 9.300 hybrid contribution -0.057 1.095 -0.487 1.200 sum -8.547 -1.136 2.585 9.001 Atomic orbital electron populations 1.69764 1.05528 1.27117 1.49263 1.24858 0.94880 0.98537 0.94767 0.86676 0.80313 0.84368 0.77539 1.19995 1.21247 1.20912 1.21092 0.93319 0.90128 1.50905 0.92563 1.18991 0.92591 0.92562 0.93900 0.95996 1.21657 0.98634 0.94278 1.00447 1.22011 0.98367 0.98981 0.97650 1.21663 0.92725 0.88693 0.98011 1.48484 1.04432 1.10668 1.67407 1.17696 0.82580 0.86481 0.78555 1.90766 1.74110 1.26400 1.50757 1.21087 0.90925 0.91914 0.98186 1.67508 1.32542 0.96695 1.13172 1.21761 0.89017 0.89425 0.96837 1.98413 1.85500 1.21972 1.92306 1.21967 0.94535 0.98913 1.00272 1.21383 1.00485 0.89900 0.97697 1.21879 0.94123 0.89146 1.02868 1.98396 1.85458 1.23108 1.92784 1.23641 1.01432 0.81787 0.97984 0.92738 0.93231 0.93172 0.92255 0.92211 0.91955 0.90035 0.83017 0.82764 0.80583 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.14 9.87 55.43 0.55 -21.59 16 2 C 0.07 1.85 5.22 -17.82 -0.09 1.76 16 3 Si 0.88 20.34 29.55 -169.99 -5.02 15.31 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -13.39 8.64 -34.44 -0.30 -13.69 16 8 H 0.06 1.47 7.76 -52.49 -0.41 1.06 16 9 C 0.04 0.93 2.33 -91.65 -0.21 0.71 16 10 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 11 C -0.11 -2.29 5.11 -26.69 -0.14 -2.42 16 12 C -0.13 -2.32 6.10 -26.38 -0.16 -2.48 16 13 C 0.11 2.03 6.45 -3.48 -0.02 2.01 16 14 N -0.58 -12.18 2.97 -173.52 -0.51 -12.69 16 15 C 0.56 11.75 7.45 -12.22 -0.09 11.66 16 16 O -0.54 -11.53 13.96 5.35 0.07 -11.45 16 17 C 0.12 2.31 6.44 -82.98 -0.53 1.77 16 18 N -0.39 -7.72 6.24 -6.92 -0.04 -7.77 16 19 C 0.20 3.39 6.99 -17.46 -0.12 3.27 16 20 Cl -0.01 -0.18 27.05 -51.86 -1.40 -1.59 16 21 C -0.14 -1.81 9.88 -39.29 -0.39 -2.20 16 22 C -0.07 -0.89 9.98 -39.28 -0.39 -1.28 16 23 C -0.05 -0.82 6.36 -38.93 -0.25 -1.07 16 24 Cl -0.03 -0.42 26.37 -51.86 -1.37 -1.79 16 25 C 0.07 1.65 4.94 -3.71 -0.02 1.63 16 26 H 0.26 6.35 7.11 -40.82 -0.29 6.06 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.44 7.03 -51.93 -0.36 1.07 16 33 H 0.15 1.48 8.06 -52.48 -0.42 1.05 16 34 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.18 4.21 1.78 -80.54 -0.14 4.07 16 36 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -27.92 319.97 -9.43 -37.36 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -3.81 Total: -0.28 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.72 Total: -0.33 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.01 Total: -42.05 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -2.77 Total: -3.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.92 -9.43 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397714341.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.511 kcal (2) G-P(sol) polarization free energy of solvation -27.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds