Wall clock time and date at job start Tue Mar 31 2020 14:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99829 * 2 1 4 4 H 1.48504 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47377 * 299.99613 * 3 2 1 6 6 H 1.48503 * 109.47166 * 59.99766 * 3 2 1 7 7 C 1.37876 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99940 * 174.98470 * 7 2 1 9 9 C 1.50699 * 120.00160 * 354.98520 * 7 2 1 10 10 H 1.08997 * 109.49768 * 66.43843 * 9 7 2 11 11 C 1.53037 * 109.52385 * 186.52066 * 9 7 2 12 12 C 1.53042 * 109.53706 * 181.33486 * 11 9 7 13 13 C 1.53625 * 109.24170 * 298.50498 * 12 11 9 14 14 N 1.46929 * 108.53857 * 54.85976 * 13 12 11 15 15 C 1.34779 * 120.62946 * 126.36957 * 14 13 12 16 16 O 1.21519 * 120.00170 * 3.83673 * 15 14 13 17 17 C 1.48075 * 119.99865 * 183.83738 * 15 14 13 18 18 N 1.32814 * 119.73136 * 334.85380 * 17 15 14 19 19 C 1.31554 * 121.63466 * 180.02562 * 18 17 15 20 20 Cl 1.73601 * 119.54310 * 179.97438 * 19 18 17 21 21 C 1.38805 * 120.90992 * 359.97438 * 19 18 17 22 22 C 1.38453 * 119.36414 * 359.97438 * 21 19 18 23 23 C 1.38838 * 118.49558 * 0.02616 * 22 21 19 24 24 Cl 1.73597 * 120.47292 * 180.02562 * 23 22 21 25 25 C 1.46928 * 118.73889 * 306.09133 * 14 13 12 26 26 H 0.96996 * 120.00051 * 7.91439 * 1 2 3 27 27 H 1.09007 * 109.46193 * 301.34918 * 11 9 7 28 28 H 1.08995 * 109.46496 * 61.31382 * 11 9 7 29 29 H 1.08994 * 109.50278 * 58.58601 * 12 11 9 30 30 H 1.09008 * 109.49670 * 178.68564 * 12 11 9 31 31 H 1.08998 * 109.74067 * 295.12397 * 13 12 11 32 32 H 1.09000 * 109.66568 * 174.54733 * 13 12 11 33 33 H 1.08004 * 120.31800 * 180.02562 * 21 19 18 34 34 H 1.08002 * 120.75251 * 180.29576 * 22 21 19 35 35 H 1.09005 * 109.58720 * 173.64801 * 25 14 13 36 36 H 1.09001 * 109.58708 * 293.93343 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0814 -1.1959 -0.0812 9 6 1.2554 -2.4966 0.1152 10 1 0.6482 -2.6469 -0.7774 11 6 2.2522 -3.6493 0.2550 12 6 1.4928 -4.9754 0.3380 13 6 0.5895 -4.9646 1.5806 14 7 -0.2744 -3.7777 1.5198 15 6 -1.6129 -3.8966 1.6239 16 8 -2.1114 -4.9837 1.8392 17 6 -2.4759 -2.7025 1.4758 18 7 -1.9837 -1.4974 1.7389 19 6 -2.7170 -0.4116 1.6204 20 17 -2.0183 1.1366 1.9791 21 6 -4.0416 -0.4868 1.2125 22 6 -4.5949 -1.7234 0.9269 23 6 -3.7980 -2.8524 1.0605 24 17 -4.4389 -4.4284 0.7153 25 6 0.3490 -2.4582 1.3496 26 1 -0.4850 0.8320 -0.1157 27 1 2.9145 -3.6638 -0.6108 28 1 2.8423 -3.5114 1.1610 29 1 0.8835 -5.1024 -0.5567 30 1 2.2042 -5.7979 0.4140 31 1 1.2025 -4.9247 2.4810 32 1 -0.0259 -5.8642 1.5945 33 1 -4.6348 0.4108 1.1180 34 1 -5.6218 -1.8075 0.6031 35 1 -0.4252 -1.7034 1.2111 36 1 0.9407 -2.2169 2.2327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397714341.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:43 Heat of formation + Delta-G solvation = -5.183206 kcal Electronic energy + Delta-G solvation = -24443.565273 eV Core-core repulsion = 20786.690345 eV Total energy + Delta-G solvation = -3656.874928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95192 -40.28600 -38.42488 -37.70904 -37.37633 -34.98687 -34.34403 -33.14780 -32.10150 -31.29348 -27.07447 -26.80147 -25.08338 -24.68437 -23.28224 -21.83755 -20.40071 -18.72302 -18.30939 -18.18248 -17.51880 -17.01658 -16.53829 -16.46140 -16.21989 -15.44168 -15.18097 -14.93336 -14.58244 -14.56220 -14.17657 -13.80181 -13.66635 -13.53586 -13.36853 -12.84852 -12.72296 -12.48597 -12.38049 -12.21809 -12.11611 -11.94158 -11.82257 -11.70181 -11.29612 -11.14140 -10.95362 -10.81486 -10.40067 -9.93562 -9.69086 -9.38648 -7.92637 -6.05572 -0.61184 -0.09847 0.71855 1.06721 1.42445 1.48192 1.55387 1.59552 2.03172 2.50754 2.53938 3.09525 3.29379 3.53453 3.66169 3.79121 4.04260 4.11684 4.21092 4.34205 4.51968 4.61937 4.68445 4.72577 4.86577 4.91851 5.08792 5.09737 5.22686 5.31332 5.41953 5.65281 5.80480 5.99190 6.30388 6.38023 6.39824 6.71146 6.96040 7.12211 7.59261 9.08579 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010873 B = 0.007230 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.457926 B = 3871.827636 C = 6002.762271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.040 3.960 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.046 0.954 9 C 0.040 3.960 10 H -0.015 1.015 11 C -0.108 4.108 12 C -0.121 4.121 13 C 0.107 3.893 14 N -0.589 5.589 15 C 0.555 3.445 16 O -0.553 6.553 17 C 0.083 3.917 18 N -0.421 5.421 19 C 0.173 3.827 20 Cl -0.019 7.019 21 C -0.112 4.112 22 C -0.050 4.050 23 C -0.053 4.053 24 Cl -0.023 7.023 25 C 0.079 3.921 26 H 0.265 0.735 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.196 0.804 34 H 0.203 0.797 35 H 0.178 0.822 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.575 -1.446 2.404 10.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.163 4.163 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.582 4.582 8 H 0.064 0.936 9 C 0.021 3.979 10 H 0.004 0.996 11 C -0.146 4.146 12 C -0.159 4.159 13 C -0.015 4.015 14 N -0.319 5.319 15 C 0.342 3.658 16 O -0.432 6.432 17 C -0.055 4.055 18 N -0.135 5.135 19 C 0.007 3.993 20 Cl 0.009 6.991 21 C -0.133 4.133 22 C -0.076 4.076 23 C -0.084 4.084 24 Cl 0.006 6.994 25 C -0.041 4.041 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.214 0.786 34 H 0.220 0.780 35 H 0.194 0.806 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.082 -1.849 2.900 10.652 hybrid contribution 0.345 0.998 -0.435 1.142 sum -9.736 -0.852 2.465 10.079 Atomic orbital electron populations 1.69842 1.05851 1.27735 1.48186 1.25385 0.95753 1.00591 0.94575 0.85932 0.79193 0.81581 0.77500 1.20290 1.20853 1.20669 1.21276 0.93068 0.91532 1.52330 0.93552 1.18892 0.92918 0.93351 0.92705 0.99645 1.21563 0.98039 0.94569 1.00448 1.21935 0.98512 0.98533 0.96936 1.21848 0.92789 0.88039 0.98820 1.48519 1.05018 1.10607 1.67728 1.18044 0.82638 0.87178 0.77982 1.90732 1.74211 1.26980 1.51309 1.20940 0.92151 0.91349 1.01099 1.67164 1.34357 0.97536 1.14454 1.22108 0.90523 0.88573 0.98100 1.98401 1.85973 1.22206 1.92499 1.22439 0.92913 1.00766 0.97141 1.21930 1.01956 0.88199 0.95517 1.22102 0.93486 0.90420 1.02383 1.98395 1.85076 1.23239 1.92674 1.23375 1.01152 0.83246 0.96375 0.92417 0.93232 0.93014 0.93267 0.88507 0.90715 0.89351 0.78645 0.77998 0.80636 0.95820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.61 9.87 21.45 0.21 -44.40 16 2 C 0.04 2.05 5.22 84.65 0.44 2.49 16 3 Si 0.93 41.83 29.55 68.60 2.03 43.86 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.54 -28.94 8.64 25.60 0.22 -28.72 16 8 H 0.05 2.49 7.76 -2.91 -0.02 2.47 16 9 C 0.04 2.00 2.33 -11.46 -0.03 1.98 16 10 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 11 C -0.11 -4.45 5.11 30.62 0.16 -4.29 16 12 C -0.12 -4.17 6.10 30.82 0.19 -3.99 16 13 C 0.11 3.85 6.45 86.51 0.56 4.41 16 14 N -0.59 -25.18 2.97 -821.19 -2.44 -27.61 16 15 C 0.56 23.49 7.45 86.85 0.65 24.14 16 16 O -0.55 -23.53 13.96 -3.78 -0.05 -23.58 16 17 C 0.08 3.23 6.44 41.88 0.27 3.50 16 18 N -0.42 -16.91 6.24 -175.80 -1.10 -18.00 16 19 C 0.17 5.79 6.99 84.87 0.59 6.38 16 20 Cl -0.02 -0.65 27.05 -2.72 -0.07 -0.72 16 21 C -0.11 -2.62 9.88 22.46 0.22 -2.39 16 22 C -0.05 -1.12 9.98 22.46 0.22 -0.90 16 23 C -0.05 -1.67 6.36 22.69 0.14 -1.52 16 24 Cl -0.02 -0.69 26.37 -2.72 -0.07 -0.76 16 25 C 0.08 3.77 4.94 86.36 0.43 4.20 16 26 H 0.27 12.79 7.11 -92.71 -0.66 12.14 16 27 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.09 3.06 7.03 -2.39 -0.02 3.04 16 33 H 0.20 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.18 8.61 1.78 -58.89 -0.10 8.50 16 36 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -62.34 319.97 3.71 -58.63 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.13 Total: 7.31 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 4.07 Total: 5.28 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -3.32 Total: -90.01 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.15 Total: -1.48 kcal Total: -62.34 3.71 -58.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397714341.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.449 kcal (2) G-P(sol) polarization free energy of solvation -62.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds