Wall clock time and date at job start Tue Mar 31 2020 14:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99877 * 2 1 4 4 H 1.48499 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46912 * 299.99728 * 3 2 1 6 6 H 1.48491 * 109.46984 * 60.00000 * 3 2 1 7 7 C 1.37872 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00681 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99848 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.49903 * 300.07646 * 9 7 2 11 11 C 1.53033 * 109.49847 * 180.02562 * 9 7 2 12 12 C 1.53041 * 109.53767 * 178.68804 * 11 9 7 13 13 C 1.53188 * 109.31556 * 61.36879 * 12 11 9 14 14 N 1.46925 * 108.77292 * 305.36648 * 13 12 11 15 15 C 1.34783 * 120.62913 * 233.58892 * 14 13 12 16 16 O 1.21531 * 119.99757 * 183.86057 * 15 14 13 17 17 C 1.48074 * 120.00061 * 3.85603 * 15 14 13 18 18 N 1.32806 * 119.72846 * 318.99123 * 17 15 14 19 19 C 1.31564 * 121.63196 * 179.97438 * 18 17 15 20 20 Cl 1.73596 * 119.54437 * 179.97438 * 19 18 17 21 21 C 1.38803 * 120.90848 * 0.02562 * 19 18 17 22 22 C 1.38452 * 119.36564 * 359.97438 * 21 19 18 23 23 C 1.38841 * 118.49429 * 0.25284 * 22 21 19 24 24 Cl 1.73596 * 120.47483 * 179.74573 * 23 22 21 25 25 C 1.46930 * 118.74087 * 53.85692 * 14 13 12 26 26 H 0.97009 * 120.00130 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.45869 * 58.66810 * 11 9 7 28 28 H 1.09002 * 109.45527 * 298.70258 * 11 9 7 29 29 H 1.08997 * 109.49500 * 301.41369 * 12 11 9 30 30 H 1.08999 * 109.49586 * 181.32139 * 12 11 9 31 31 H 1.08997 * 109.58945 * 185.57557 * 13 12 11 32 32 H 1.08996 * 109.70675 * 65.21557 * 13 12 11 33 33 H 1.08002 * 120.32046 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.75573 * 179.97438 * 22 21 19 35 35 H 1.08997 * 109.58173 * 65.92969 * 25 14 13 36 36 H 1.09001 * 109.58626 * 186.35121 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6235 -2.5570 0.8888 11 6 2.2449 -3.6628 -0.0005 12 6 1.4809 -4.9885 0.0325 13 6 0.6058 -5.1003 -1.2198 14 7 -0.2527 -3.9109 -1.3044 15 6 -1.5891 -4.0360 -1.4270 16 8 -2.2817 -3.0472 -1.5665 17 6 -2.2134 -5.3783 -1.3917 18 7 -1.6326 -6.3916 -2.0238 19 6 -2.1542 -7.5994 -2.0166 20 17 -1.3494 -8.8844 -2.8618 21 6 -3.3397 -7.8600 -1.3433 22 6 -3.9787 -6.8322 -0.6709 23 6 -3.4083 -5.5667 -0.6993 24 17 -4.1695 -4.2393 0.1206 25 6 0.3737 -2.5827 -1.2589 26 1 -0.4851 0.8401 -0.0004 27 1 2.8871 -3.5918 0.8773 28 1 2.8561 -3.6183 -0.9020 29 1 0.8507 -5.0230 0.9211 30 1 2.1896 -5.8163 0.0562 31 1 -0.0140 -5.9944 -1.1539 32 1 1.2378 -5.1583 -2.1059 33 1 -3.7597 -8.8551 -1.3440 34 1 -4.9024 -7.0098 -0.1401 35 1 0.9891 -2.4384 -2.1469 36 1 -0.3993 -1.8153 -1.2188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397714344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:46 Heat of formation + Delta-G solvation = -2.906316 kcal Electronic energy + Delta-G solvation = -23640.514995 eV Core-core repulsion = 19983.738801 eV Total energy + Delta-G solvation = -3656.776194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93920 -38.94673 -37.13064 -36.68997 -36.51072 -33.63539 -32.86234 -31.74366 -31.17605 -29.69431 -25.87641 -25.02990 -23.98101 -23.54556 -21.78918 -20.42767 -18.82887 -17.58217 -17.40564 -16.71036 -16.20358 -15.91699 -15.31465 -14.93886 -14.43867 -14.17487 -13.94007 -13.59528 -13.44232 -13.01839 -12.75820 -12.70537 -12.53473 -12.11766 -11.84785 -11.70073 -11.49743 -11.18161 -10.99707 -10.89599 -10.51132 -10.47714 -10.29825 -10.22813 -10.03868 -9.84015 -9.35428 -9.13084 -9.03848 -8.87151 -8.43398 -7.76516 -5.99646 -4.07997 0.25987 0.58145 1.35261 1.95104 2.76605 3.28586 3.35109 3.39638 3.42557 3.45049 4.14964 4.34547 4.40659 4.45695 4.48256 4.96349 5.22102 5.30867 5.38058 5.50942 5.59054 5.75223 5.80562 6.15387 6.26330 6.36037 6.61472 6.68316 6.86398 6.97944 7.10335 7.14934 7.23365 7.61804 7.85781 7.97595 8.17241 8.37409 8.67986 8.96152 9.57745 11.05881 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.004074 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.931907 B = 6870.460061 C = 8078.804550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.136 4.136 13 C 0.103 3.897 14 N -0.580 5.580 15 C 0.556 3.444 16 O -0.507 6.507 17 C 0.129 3.871 18 N -0.433 5.433 19 C 0.168 3.832 20 Cl -0.020 7.020 21 C -0.132 4.132 22 C -0.060 4.060 23 C -0.048 4.048 24 Cl -0.009 7.009 25 C 0.112 3.888 26 H 0.263 0.737 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.047 0.953 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 -18.924 -1.873 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.174 4.174 13 C -0.021 4.021 14 N -0.311 5.311 15 C 0.339 3.661 16 O -0.382 6.382 17 C -0.011 4.011 18 N -0.147 5.147 19 C 0.001 3.999 20 Cl 0.009 6.991 21 C -0.153 4.153 22 C -0.086 4.086 23 C -0.079 4.079 24 Cl 0.021 6.979 25 C -0.007 4.007 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.066 0.934 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.063 -18.042 -2.397 19.523 hybrid contribution -0.197 0.536 0.372 0.682 sum -7.260 -17.506 -2.025 19.060 Atomic orbital electron populations 1.69892 1.05731 1.26748 1.49409 1.25046 0.94875 0.99244 0.94800 0.86542 0.80077 0.83815 0.77624 1.19783 1.20963 1.21031 1.21112 0.92971 0.90036 1.51714 0.92252 1.19054 0.92640 0.92402 0.93757 0.95210 1.21636 0.98553 0.94025 1.00633 1.21991 0.98679 0.99130 0.97584 1.21990 0.93641 0.88261 0.98178 1.48404 1.04449 1.09738 1.68540 1.17610 0.83250 0.85776 0.79454 1.90872 1.61602 1.36559 1.49119 1.21493 0.91635 0.94009 0.93972 1.67378 1.31486 0.98452 1.17397 1.21826 0.92036 0.89768 0.96233 1.98424 1.79987 1.44799 1.75900 1.21963 0.94362 1.01371 0.97609 1.21551 1.00159 0.89713 0.97223 1.22059 0.95232 0.91820 0.98741 1.98461 1.79611 1.44280 1.75572 1.22512 0.98722 0.80571 0.98912 0.92693 0.93008 0.93071 0.92470 0.92196 0.89433 0.91606 0.82506 0.82129 0.93427 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.45 11.41 55.43 0.63 -24.82 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.02 8.56 -34.44 -0.29 -14.31 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.04 1.00 2.26 -91.43 -0.21 0.79 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.23 5.10 -26.69 -0.14 -2.37 16 12 C -0.14 -2.31 6.08 -26.61 -0.16 -2.47 16 13 C 0.10 1.77 6.02 -3.71 -0.02 1.75 16 14 N -0.58 -12.12 2.97 -173.53 -0.51 -12.64 16 15 C 0.56 11.56 7.12 -12.22 -0.09 11.48 16 16 O -0.51 -12.12 14.76 5.34 0.08 -12.05 16 17 C 0.13 2.13 5.98 -82.99 -0.50 1.64 16 18 N -0.43 -6.39 7.32 -6.92 -0.05 -6.44 16 19 C 0.17 1.92 7.27 -17.46 -0.13 1.80 16 20 Cl -0.02 -0.19 29.10 -51.86 -1.51 -1.70 16 21 C -0.13 -1.15 9.88 -39.29 -0.39 -1.53 16 22 C -0.06 -0.58 9.98 -39.28 -0.39 -0.97 16 23 C -0.05 -0.68 6.35 -38.93 -0.25 -0.92 16 24 Cl -0.01 -0.13 26.87 -51.86 -1.39 -1.53 16 25 C 0.11 2.73 5.42 -3.48 -0.02 2.72 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.40 4.61 -51.93 -0.24 1.16 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.12 3.47 5.17 -51.93 -0.27 3.20 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -30.69 327.54 -9.37 -40.06 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.85 Total: -1.24 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.67 Total: -0.76 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.07 Total: -43.90 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -2.90 Total: -3.23 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.69 -9.37 -40.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397714344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.152 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds