Wall clock time and date at job start Tue Mar 31 2020 14:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99877 * 2 1 4 4 H 1.48499 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46912 * 299.99728 * 3 2 1 6 6 H 1.48491 * 109.46984 * 60.00000 * 3 2 1 7 7 C 1.37872 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00681 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99848 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.49903 * 300.07646 * 9 7 2 11 11 C 1.53033 * 109.49847 * 180.02562 * 9 7 2 12 12 C 1.53041 * 109.53767 * 178.68804 * 11 9 7 13 13 C 1.53188 * 109.31556 * 61.36879 * 12 11 9 14 14 N 1.46925 * 108.77292 * 305.36648 * 13 12 11 15 15 C 1.34783 * 120.62913 * 233.58892 * 14 13 12 16 16 O 1.21531 * 119.99757 * 183.86057 * 15 14 13 17 17 C 1.48074 * 120.00061 * 3.85603 * 15 14 13 18 18 N 1.32806 * 119.72846 * 318.99123 * 17 15 14 19 19 C 1.31564 * 121.63196 * 179.97438 * 18 17 15 20 20 Cl 1.73596 * 119.54437 * 179.97438 * 19 18 17 21 21 C 1.38803 * 120.90848 * 0.02562 * 19 18 17 22 22 C 1.38452 * 119.36564 * 359.97438 * 21 19 18 23 23 C 1.38841 * 118.49429 * 0.25284 * 22 21 19 24 24 Cl 1.73596 * 120.47483 * 179.74573 * 23 22 21 25 25 C 1.46930 * 118.74087 * 53.85692 * 14 13 12 26 26 H 0.97009 * 120.00130 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.45869 * 58.66810 * 11 9 7 28 28 H 1.09002 * 109.45527 * 298.70258 * 11 9 7 29 29 H 1.08997 * 109.49500 * 301.41369 * 12 11 9 30 30 H 1.08999 * 109.49586 * 181.32139 * 12 11 9 31 31 H 1.08997 * 109.58945 * 185.57557 * 13 12 11 32 32 H 1.08996 * 109.70675 * 65.21557 * 13 12 11 33 33 H 1.08002 * 120.32046 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.75573 * 179.97438 * 22 21 19 35 35 H 1.08997 * 109.58173 * 65.92969 * 25 14 13 36 36 H 1.09001 * 109.58626 * 186.35121 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6235 -2.5570 0.8888 11 6 2.2449 -3.6628 -0.0005 12 6 1.4809 -4.9885 0.0325 13 6 0.6058 -5.1003 -1.2198 14 7 -0.2527 -3.9109 -1.3044 15 6 -1.5891 -4.0360 -1.4270 16 8 -2.2817 -3.0472 -1.5665 17 6 -2.2134 -5.3783 -1.3917 18 7 -1.6326 -6.3916 -2.0238 19 6 -2.1542 -7.5994 -2.0166 20 17 -1.3494 -8.8844 -2.8618 21 6 -3.3397 -7.8600 -1.3433 22 6 -3.9787 -6.8322 -0.6709 23 6 -3.4083 -5.5667 -0.6993 24 17 -4.1695 -4.2393 0.1206 25 6 0.3737 -2.5827 -1.2589 26 1 -0.4851 0.8401 -0.0004 27 1 2.8871 -3.5918 0.8773 28 1 2.8561 -3.6183 -0.9020 29 1 0.8507 -5.0230 0.9211 30 1 2.1896 -5.8163 0.0562 31 1 -0.0140 -5.9944 -1.1539 32 1 1.2378 -5.1583 -2.1059 33 1 -3.7597 -8.8551 -1.3440 34 1 -4.9024 -7.0098 -0.1401 35 1 0.9891 -2.4384 -2.1469 36 1 -0.3993 -1.8153 -1.2188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397714344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:46 Heat of formation + Delta-G solvation = -21.249931 kcal Electronic energy + Delta-G solvation = -23641.310434 eV Core-core repulsion = 19983.738801 eV Total energy + Delta-G solvation = -3657.571633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.08313 -40.39817 -38.45873 -37.90202 -37.58946 -35.37404 -34.10286 -33.35152 -32.27593 -31.46475 -27.43650 -26.80019 -25.13551 -24.71328 -23.46615 -21.93604 -20.41409 -18.94717 -18.55821 -18.16081 -17.65731 -17.24111 -16.66014 -16.52422 -16.11215 -15.57898 -15.14337 -15.11277 -14.65714 -14.52721 -14.35775 -13.91917 -13.88187 -13.68654 -13.48266 -12.91245 -12.79868 -12.58360 -12.41094 -12.31145 -12.24108 -12.17923 -11.86303 -11.68329 -11.48214 -11.11737 -11.09973 -10.97181 -10.55447 -10.43534 -10.08169 -9.47245 -8.10835 -6.27437 -0.74305 -0.31295 0.45971 0.91667 1.40038 1.42223 1.51058 1.54004 1.91948 2.25351 2.42540 2.94593 3.17916 3.37248 3.47861 3.64358 3.97552 4.10498 4.15648 4.31910 4.38323 4.59103 4.61142 4.73016 4.81954 4.83047 4.99830 5.05500 5.21714 5.23490 5.32460 5.51557 5.59304 5.86463 5.95865 6.11799 6.31648 6.50592 6.84086 7.08905 7.42643 8.93176 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.004074 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.931907 B = 6870.460061 C = 8078.804550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.041 3.959 10 H -0.010 1.010 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.103 3.897 14 N -0.589 5.589 15 C 0.549 3.451 16 O -0.554 6.554 17 C 0.100 3.900 18 N -0.453 5.453 19 C 0.160 3.840 20 Cl -0.002 7.002 21 C -0.100 4.100 22 C -0.042 4.042 23 C -0.058 4.058 24 Cl -0.034 7.034 25 C 0.126 3.874 26 H 0.260 0.740 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.208 0.792 34 H 0.203 0.797 35 H 0.040 0.960 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 -22.487 -1.963 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.185 1.185 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.021 3.979 10 H 0.008 0.992 11 C -0.142 4.142 12 C -0.165 4.165 13 C -0.019 4.019 14 N -0.319 5.319 15 C 0.334 3.666 16 O -0.432 6.432 17 C -0.038 4.038 18 N -0.168 5.168 19 C -0.007 4.007 20 Cl 0.027 6.973 21 C -0.120 4.120 22 C -0.068 4.068 23 C -0.088 4.088 24 Cl -0.005 7.005 25 C 0.004 3.996 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.225 0.775 34 H 0.220 0.780 35 H 0.058 0.942 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.898 -21.646 -2.485 22.854 hybrid contribution -0.277 1.461 0.349 1.528 sum -7.175 -20.184 -2.136 21.528 Atomic orbital electron populations 1.70084 1.07379 1.27226 1.50571 1.25869 0.95550 1.02828 0.94516 0.85515 0.79300 0.79494 0.77420 1.18462 1.20911 1.20806 1.21518 0.93312 0.91331 1.51149 0.91905 1.18969 0.93022 0.93845 0.92032 0.99216 1.21522 0.97702 0.93909 1.01088 1.21944 0.98914 0.98557 0.97046 1.22215 0.93588 0.87427 0.98700 1.48408 1.05345 1.09413 1.68738 1.18277 0.82846 0.87485 0.77974 1.90823 1.62541 1.38934 1.50901 1.20668 0.93146 0.92505 0.97455 1.67143 1.32513 0.99334 1.17761 1.22242 0.93051 0.88974 0.96422 1.98439 1.79918 1.43379 1.75574 1.22521 0.92249 1.03046 0.94211 1.22041 1.00945 0.87465 0.96334 1.22255 0.94760 0.92888 0.98900 1.98452 1.79825 1.46103 1.76086 1.21932 0.97331 0.81958 0.98331 0.93091 0.92617 0.92407 0.93310 0.88033 0.87483 0.90652 0.77538 0.77979 0.94215 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.79 11.41 21.45 0.24 -55.54 16 2 C 0.01 0.68 5.30 84.65 0.45 1.12 16 3 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 7 C -0.53 -29.75 8.56 25.60 0.22 -29.53 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.04 2.09 2.26 -11.32 -0.03 2.06 16 10 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 11 C -0.10 -4.20 5.10 30.62 0.16 -4.04 16 12 C -0.13 -4.13 6.08 30.67 0.19 -3.94 16 13 C 0.10 3.47 6.02 86.36 0.52 3.99 16 14 N -0.59 -25.58 2.97 -821.21 -2.44 -28.01 16 15 C 0.55 23.93 7.12 86.85 0.62 24.55 16 16 O -0.55 -28.48 14.76 -3.81 -0.06 -28.54 16 17 C 0.10 3.31 5.98 41.88 0.25 3.56 16 18 N -0.45 -12.62 7.32 -175.80 -1.29 -13.90 16 19 C 0.16 3.11 7.27 84.87 0.62 3.73 16 20 Cl 0.00 -0.03 29.10 -2.72 -0.08 -0.11 16 21 C -0.10 -1.22 9.88 22.46 0.22 -1.00 16 22 C -0.04 -0.64 9.98 22.47 0.22 -0.41 16 23 C -0.06 -1.56 6.35 22.69 0.14 -1.41 16 24 Cl -0.03 -1.07 26.87 -2.72 -0.07 -1.14 16 25 C 0.13 6.51 5.42 86.51 0.47 6.98 16 26 H 0.26 15.26 8.31 -92.70 -0.77 14.48 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.11 3.26 4.61 -2.39 -0.01 3.25 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 33 H 0.21 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.08 4.96 5.17 -2.39 -0.01 4.95 16 Total: -1.00 -73.72 327.54 3.51 -70.20 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.12 Total: 4.74 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.05 Total: 5.65 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -3.48 Total: -97.46 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.06 Total: -28.54 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.15 Total: -1.25 kcal Total: -73.72 3.51 -70.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397714344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.954 kcal (2) G-P(sol) polarization free energy of solvation -73.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds