Wall clock time and date at job start Tue Mar 31 2020 14:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48493 * 109.47260 * 240.00599 * 3 2 1 5 5 H 1.48506 * 109.46708 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46788 * 120.00195 * 3 2 1 7 7 C 1.37875 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99757 * 175.50271 * 7 2 1 9 9 C 1.50697 * 120.00189 * 355.77616 * 7 2 1 10 10 C 1.53002 * 115.55129 * 35.31917 * 9 7 2 11 11 N 1.46504 * 109.46829 * 54.23596 * 10 9 7 12 12 C 1.34774 * 120.00150 * 184.99120 * 11 10 9 13 13 O 1.21599 * 119.99528 * 5.08497 * 12 11 10 14 14 C 1.47521 * 120.00417 * 185.07707 * 12 11 10 15 15 C 1.39791 * 120.05821 * 4.88783 * 14 12 11 16 16 C 1.37737 * 119.93247 * 179.73850 * 15 14 12 17 17 Cl 1.73603 * 119.96701 * 180.27645 * 16 15 14 18 18 C 1.39265 * 120.06053 * 0.50864 * 16 15 14 19 19 N 1.39186 * 119.93071 * 179.74430 * 18 16 15 20 20 C 1.39263 * 120.12716 * 359.76791 * 18 16 15 21 21 Cl 1.73601 * 119.96457 * 179.97438 * 20 18 16 22 22 C 1.37730 * 120.06196 * 359.97429 * 20 18 16 23 23 C 1.52997 * 117.49976 * 249.64943 * 9 7 2 24 24 C 1.52998 * 117.50163 * 180.99122 * 9 7 2 25 25 H 0.97000 * 120.00046 * 4.99060 * 1 2 3 26 26 H 1.08995 * 109.47213 * 174.23938 * 10 9 7 27 27 H 1.09000 * 109.47134 * 294.24359 * 10 9 7 28 28 H 0.97008 * 120.00067 * 5.00096 * 11 10 9 29 29 H 1.08000 * 120.03205 * 359.97438 * 15 14 12 30 30 H 0.96998 * 119.99323 * 180.02562 * 19 18 16 31 31 H 0.96996 * 120.00262 * 0.02562 * 19 18 16 32 32 H 1.08003 * 120.02766 * 180.02562 * 22 20 18 33 33 H 1.09003 * 117.49740 * 0.02562 * 23 9 7 34 34 H 1.09003 * 117.49845 * 145.01980 * 23 9 7 35 35 H 1.08994 * 117.50455 * 214.98460 * 24 9 7 36 36 H 1.09010 * 117.49566 * 359.97367 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0821 -1.1954 -0.0739 9 6 1.2541 -2.4974 0.0950 10 6 -0.0995 -2.5333 -0.6173 11 7 0.0747 -2.1376 -2.0171 12 6 -1.0010 -1.9985 -2.8170 13 8 -2.1204 -2.1107 -2.3554 14 6 -0.8206 -1.7101 -4.2524 15 6 0.4631 -1.6819 -4.8050 16 6 0.6282 -1.4177 -6.1467 17 17 2.2216 -1.3894 -6.8353 18 6 -0.4815 -1.1683 -6.9503 19 7 -0.3112 -0.8964 -8.3046 20 6 -1.7612 -1.1902 -6.4013 21 17 -3.1415 -0.8781 -7.4068 22 6 -1.9326 -1.4590 -5.0614 23 6 1.3917 -3.2984 1.3913 24 6 2.0773 -3.7869 0.1129 25 1 -0.4850 0.8369 -0.0731 26 1 -0.5066 -3.5434 -0.5732 27 1 -0.7863 -1.8430 -0.1275 28 1 0.9644 -1.9758 -2.3683 29 1 1.3243 -1.8708 -4.1813 30 1 -1.0834 -0.7222 -8.8651 31 1 0.5797 -0.8810 -8.6880 32 1 -2.9253 -1.4762 -4.6363 33 1 2.0246 -2.8824 2.1752 34 1 0.5179 -3.8512 1.7364 35 1 1.6546 -4.6609 -0.3825 36 1 3.1618 -3.6925 0.0552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404144466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:19 Heat of formation + Delta-G solvation = -0.969873 kcal Electronic energy + Delta-G solvation = -23042.117775 eV Core-core repulsion = 19385.425551 eV Total energy + Delta-G solvation = -3656.692224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.01475 -38.42721 -36.85195 -36.70220 -36.17995 -34.73573 -33.11584 -32.18257 -30.64361 -29.19774 -26.03112 -25.30678 -23.17416 -22.80575 -21.26108 -19.80615 -19.29480 -18.00871 -17.53756 -17.01892 -16.12506 -15.35111 -14.94718 -14.86690 -14.56032 -14.49279 -14.14832 -13.90687 -13.81590 -13.21320 -12.88152 -12.46629 -12.44900 -11.79823 -11.62059 -11.45731 -11.39437 -11.26148 -11.12717 -11.05759 -10.81100 -10.64987 -10.52451 -10.24131 -9.74357 -9.18083 -8.96717 -8.86120 -8.85136 -8.29466 -7.96936 -7.68903 -5.98772 -4.19679 0.94258 0.99533 1.71730 2.21981 3.07927 3.23261 3.31375 3.32062 3.41522 4.01032 4.17649 4.30376 4.64214 4.88256 5.02132 5.12963 5.26846 5.41011 5.48168 5.77558 5.96571 6.02010 6.26306 6.30651 6.39251 6.53225 6.60807 6.70597 6.89098 6.92411 7.09537 7.25198 7.30384 7.56724 7.64276 7.97759 8.30278 8.54747 8.81921 9.15144 9.44203 10.89922 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.003976 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.580226 B = 7039.805535 C = 7494.352831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.076 3.924 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.164 3.836 11 N -0.674 5.674 12 C 0.554 3.446 13 O -0.555 6.555 14 C -0.154 4.154 15 C -0.020 4.020 16 C -0.116 4.116 17 Cl -0.061 7.061 18 C 0.255 3.745 19 N -0.859 5.859 20 C -0.118 4.118 21 Cl -0.063 7.063 22 C 0.001 3.999 23 C -0.199 4.199 24 C -0.212 4.212 25 H 0.264 0.736 26 H 0.020 0.980 27 H 0.120 0.880 28 H 0.396 0.604 29 H 0.147 0.853 30 H 0.404 0.596 31 H 0.405 0.595 32 H 0.152 0.848 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 -2.128 -16.448 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.035 3.965 10 C 0.041 3.959 11 N -0.320 5.320 12 C 0.340 3.660 13 O -0.436 6.436 14 C -0.160 4.160 15 C -0.040 4.040 16 C -0.147 4.147 17 Cl -0.032 7.032 18 C 0.145 3.855 19 N -0.399 5.399 20 C -0.150 4.150 21 Cl -0.035 7.035 22 C -0.019 4.019 23 C -0.237 4.237 24 C -0.250 4.250 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.137 0.863 28 H 0.231 0.769 29 H 0.164 0.836 30 H 0.235 0.765 31 H 0.235 0.765 32 H 0.169 0.831 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.267 -2.057 -16.159 16.339 hybrid contribution 1.137 1.106 -0.667 1.720 sum -0.130 -0.952 -16.826 16.853 Atomic orbital electron populations 1.69834 1.05625 1.26909 1.47653 1.24989 0.94834 0.99010 0.94070 0.86663 0.79617 0.83064 0.78746 1.20169 1.21206 1.20166 1.20449 0.92693 0.88528 1.52013 0.92162 1.19233 0.92850 0.89906 0.94478 1.21121 0.98302 0.96728 0.79736 1.45527 1.08133 1.66487 1.11851 1.17670 0.85378 0.78290 0.84696 1.90719 1.24148 1.52905 1.75855 1.19867 0.92087 1.08565 0.95433 1.21226 0.97849 0.92671 0.92293 1.19945 0.84881 1.16213 0.93699 1.98348 1.22657 1.97550 1.84689 1.17127 0.90719 0.92391 0.85269 1.42563 1.12335 1.78884 1.06083 1.19939 0.86061 1.16349 0.92647 1.98339 1.41575 1.94747 1.68793 1.21025 1.00434 0.90733 0.89712 1.22939 1.01697 1.06575 0.92510 1.22959 0.98431 1.00027 1.03564 0.92520 0.96226 0.86298 0.76910 0.83560 0.76493 0.76458 0.83080 0.90237 0.91452 0.91323 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.76 10.11 55.43 0.56 -22.20 16 2 C 0.08 1.91 5.31 -17.82 -0.09 1.82 16 3 Si 0.89 20.01 29.54 -169.99 -5.02 14.98 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.50 -12.39 8.43 -34.44 -0.29 -12.68 16 8 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 9 C 0.04 0.83 2.04 -155.66 -0.32 0.51 16 10 C 0.16 3.78 4.62 -4.04 -0.02 3.76 16 11 N -0.67 -14.05 4.96 -61.35 -0.30 -14.36 16 12 C 0.55 11.39 7.75 -12.48 -0.10 11.29 16 13 O -0.56 -13.16 16.33 5.28 0.09 -13.08 16 14 C -0.15 -2.55 5.88 -104.96 -0.62 -3.16 16 15 C -0.02 -0.29 9.28 -39.18 -0.36 -0.66 16 16 C -0.12 -1.48 6.33 -39.38 -0.25 -1.73 16 17 Cl -0.06 -0.68 27.57 -51.86 -1.43 -2.11 16 18 C 0.25 3.04 6.75 -83.76 -0.57 2.47 16 19 N -0.86 -7.60 8.97 32.45 0.29 -7.31 16 20 C -0.12 -1.52 6.33 -39.39 -0.25 -1.77 16 21 Cl -0.06 -0.69 27.57 -51.86 -1.43 -2.12 16 22 C 0.00 0.02 9.36 -39.19 -0.37 -0.35 16 23 C -0.20 -4.24 9.96 -26.70 -0.27 -4.51 16 24 C -0.21 -4.28 9.92 -26.70 -0.26 -4.55 16 25 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 26 H 0.02 0.44 8.09 -51.93 -0.42 0.02 16 27 H 0.12 3.16 5.89 -51.93 -0.31 2.85 16 28 H 0.40 7.74 6.19 -40.82 -0.25 7.49 16 29 H 0.15 2.03 6.46 -52.49 -0.34 1.69 16 30 H 0.40 3.04 7.47 -40.82 -0.31 2.73 16 31 H 0.40 3.07 7.47 -40.82 -0.31 2.76 16 32 H 0.15 2.31 7.65 -52.48 -0.40 1.91 16 33 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -27.59 336.26 -9.51 -37.10 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -3.57 Total: 13.57 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -3.76 Total: -9.55 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.55 Total: -43.86 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -2.86 Total: -4.23 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.59 -9.51 -37.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404144466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.127 kcal (2) G-P(sol) polarization free energy of solvation -27.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds