Wall clock time and date at job start Tue Mar 31 2020 14:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48493 * 109.47260 * 240.00599 * 3 2 1 5 5 H 1.48506 * 109.46708 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46788 * 120.00195 * 3 2 1 7 7 C 1.37875 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99757 * 175.50271 * 7 2 1 9 9 C 1.50697 * 120.00189 * 355.77616 * 7 2 1 10 10 C 1.53002 * 115.55129 * 35.31917 * 9 7 2 11 11 N 1.46504 * 109.46829 * 54.23596 * 10 9 7 12 12 C 1.34774 * 120.00150 * 184.99120 * 11 10 9 13 13 O 1.21599 * 119.99528 * 5.08497 * 12 11 10 14 14 C 1.47521 * 120.00417 * 185.07707 * 12 11 10 15 15 C 1.39791 * 120.05821 * 4.88783 * 14 12 11 16 16 C 1.37737 * 119.93247 * 179.73850 * 15 14 12 17 17 Cl 1.73603 * 119.96701 * 180.27645 * 16 15 14 18 18 C 1.39265 * 120.06053 * 0.50864 * 16 15 14 19 19 N 1.39186 * 119.93071 * 179.74430 * 18 16 15 20 20 C 1.39263 * 120.12716 * 359.76791 * 18 16 15 21 21 Cl 1.73601 * 119.96457 * 179.97438 * 20 18 16 22 22 C 1.37730 * 120.06196 * 359.97429 * 20 18 16 23 23 C 1.52997 * 117.49976 * 249.64943 * 9 7 2 24 24 C 1.52998 * 117.50163 * 180.99122 * 9 7 2 25 25 H 0.97000 * 120.00046 * 4.99060 * 1 2 3 26 26 H 1.08995 * 109.47213 * 174.23938 * 10 9 7 27 27 H 1.09000 * 109.47134 * 294.24359 * 10 9 7 28 28 H 0.97008 * 120.00067 * 5.00096 * 11 10 9 29 29 H 1.08000 * 120.03205 * 359.97438 * 15 14 12 30 30 H 0.96998 * 119.99323 * 180.02562 * 19 18 16 31 31 H 0.96996 * 120.00262 * 0.02562 * 19 18 16 32 32 H 1.08003 * 120.02766 * 180.02562 * 22 20 18 33 33 H 1.09003 * 117.49740 * 0.02562 * 23 9 7 34 34 H 1.09003 * 117.49845 * 145.01980 * 23 9 7 35 35 H 1.08994 * 117.50455 * 214.98460 * 24 9 7 36 36 H 1.09010 * 117.49566 * 359.97367 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0821 -1.1954 -0.0739 9 6 1.2541 -2.4974 0.0950 10 6 -0.0995 -2.5333 -0.6173 11 7 0.0747 -2.1376 -2.0171 12 6 -1.0010 -1.9985 -2.8170 13 8 -2.1204 -2.1107 -2.3554 14 6 -0.8206 -1.7101 -4.2524 15 6 0.4631 -1.6819 -4.8050 16 6 0.6282 -1.4177 -6.1467 17 17 2.2216 -1.3894 -6.8353 18 6 -0.4815 -1.1683 -6.9503 19 7 -0.3112 -0.8964 -8.3046 20 6 -1.7612 -1.1902 -6.4013 21 17 -3.1415 -0.8781 -7.4068 22 6 -1.9326 -1.4590 -5.0614 23 6 1.3917 -3.2984 1.3913 24 6 2.0773 -3.7869 0.1129 25 1 -0.4850 0.8369 -0.0731 26 1 -0.5066 -3.5434 -0.5732 27 1 -0.7863 -1.8430 -0.1275 28 1 0.9644 -1.9758 -2.3683 29 1 1.3243 -1.8708 -4.1813 30 1 -1.0834 -0.7222 -8.8651 31 1 0.5797 -0.8810 -8.6880 32 1 -2.9253 -1.4762 -4.6363 33 1 2.0246 -2.8824 2.1752 34 1 0.5179 -3.8512 1.7364 35 1 1.6546 -4.6609 -0.3825 36 1 3.1618 -3.6925 0.0552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404144466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:18 Heat of formation + Delta-G solvation = -16.696474 kcal Electronic energy + Delta-G solvation = -23042.799731 eV Core-core repulsion = 19385.425551 eV Total energy + Delta-G solvation = -3657.374180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24494 -39.87161 -38.38856 -37.80716 -37.20261 -35.78809 -34.77030 -34.08381 -31.75479 -30.35942 -27.77850 -27.08023 -24.33173 -23.98035 -22.92384 -21.27326 -21.08035 -19.34873 -18.52471 -18.29107 -17.70570 -16.73500 -16.66114 -16.33777 -15.96130 -15.54954 -15.44205 -15.32693 -15.21835 -14.69527 -14.35868 -14.00060 -13.56545 -13.39019 -13.33142 -12.85808 -12.73596 -12.57602 -12.28837 -12.27824 -12.24092 -12.05895 -12.00335 -11.82494 -11.50980 -10.93723 -10.76441 -10.60622 -10.11470 -9.91163 -9.63590 -8.75809 -7.89414 -6.15856 -0.20116 -0.08728 0.71999 1.21970 1.44613 1.48211 1.53651 1.81979 2.43524 2.49923 2.55206 2.75018 3.11390 3.59192 3.66471 3.82125 3.98796 4.11700 4.25609 4.33064 4.58250 4.67233 4.73607 4.80941 4.86472 5.00764 5.10185 5.19471 5.25074 5.37239 5.57415 5.65052 5.92206 6.04509 6.05256 6.41355 6.58992 6.81731 7.00135 7.49447 7.55210 8.95461 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.003976 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.580226 B = 7039.805535 C = 7494.352831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.007 3.993 10 C 0.175 3.825 11 N -0.672 5.672 12 C 0.552 3.448 13 O -0.598 6.598 14 C -0.179 4.179 15 C -0.016 4.016 16 C -0.120 4.120 17 Cl -0.042 7.042 18 C 0.271 3.729 19 N -0.839 5.839 20 C -0.121 4.121 21 Cl -0.043 7.043 22 C -0.001 4.001 23 C -0.201 4.201 24 C -0.185 4.185 25 H 0.256 0.744 26 H 0.020 0.980 27 H 0.082 0.918 28 H 0.402 0.598 29 H 0.149 0.851 30 H 0.414 0.586 31 H 0.415 0.585 32 H 0.141 0.859 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.122 -2.157 -18.743 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.007 3.993 10 C 0.051 3.949 11 N -0.318 5.318 12 C 0.340 3.660 13 O -0.481 6.481 14 C -0.185 4.185 15 C -0.036 4.036 16 C -0.152 4.152 17 Cl -0.013 7.013 18 C 0.158 3.842 19 N -0.378 5.378 20 C -0.153 4.153 21 Cl -0.015 7.015 22 C -0.022 4.022 23 C -0.239 4.239 24 C -0.222 4.222 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.100 0.900 28 H 0.238 0.762 29 H 0.167 0.833 30 H 0.247 0.753 31 H 0.247 0.753 32 H 0.159 0.841 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.242 -2.086 -18.508 18.627 hybrid contribution 0.696 1.100 -0.084 1.304 sum 0.938 -0.986 -18.592 18.641 Atomic orbital electron populations 1.70039 1.06696 1.26658 1.49040 1.25548 0.95279 1.01439 0.94156 0.85854 0.78418 0.79911 0.78909 1.19113 1.22075 1.20163 1.20653 0.92681 0.89438 1.51312 0.92269 1.19271 0.93304 0.90677 0.96087 1.20779 0.97766 0.95598 0.80779 1.45434 1.08632 1.66636 1.11111 1.18240 0.84510 0.77005 0.86280 1.90677 1.25566 1.54792 1.77107 1.19455 0.93682 1.12123 0.93238 1.21179 0.96912 0.92332 0.93163 1.19907 0.86054 1.15975 0.93222 1.98357 1.21285 1.97454 1.84203 1.17128 0.90070 0.90698 0.86282 1.42593 1.13513 1.76875 1.04868 1.19862 0.87184 1.16129 0.92124 1.98346 1.40673 1.94579 1.67866 1.20946 0.99576 0.90999 0.90658 1.22958 1.02246 1.06302 0.92430 1.22953 0.98619 0.98751 1.01854 0.93453 0.96233 0.90045 0.76225 0.83320 0.75333 0.75286 0.84115 0.90557 0.90624 0.89590 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.05 10.11 21.45 0.22 -47.84 16 2 C 0.04 1.91 5.31 84.65 0.45 2.36 16 3 Si 0.94 41.07 29.54 68.60 2.03 43.10 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.50 -24.86 8.43 25.60 0.22 -24.65 16 8 H 0.06 2.88 7.82 -2.91 -0.02 2.86 16 9 C 0.01 0.33 2.04 -52.93 -0.11 0.22 16 10 C 0.17 8.26 4.62 86.38 0.40 8.66 16 11 N -0.67 -28.70 4.96 -466.27 -2.31 -31.02 16 12 C 0.55 23.49 7.75 86.69 0.67 24.16 16 13 O -0.60 -29.76 16.33 -4.03 -0.07 -29.83 16 14 C -0.18 -6.01 5.88 -20.08 -0.12 -6.13 16 15 C -0.02 -0.44 9.28 22.53 0.21 -0.23 16 16 C -0.12 -2.82 6.33 22.40 0.14 -2.68 16 17 Cl -0.04 -0.82 27.57 -2.72 -0.07 -0.89 16 18 C 0.27 5.82 6.75 38.47 0.26 6.08 16 19 N -0.84 -12.12 8.97 -51.24 -0.46 -12.58 16 20 C -0.12 -2.93 6.33 22.40 0.14 -2.79 16 21 Cl -0.04 -0.86 27.57 -2.72 -0.07 -0.94 16 22 C 0.00 -0.04 9.36 22.52 0.21 0.17 16 23 C -0.20 -8.42 9.96 30.62 0.30 -8.12 16 24 C -0.18 -7.12 9.92 30.62 0.30 -6.81 16 25 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 26 H 0.02 0.90 8.09 -2.39 -0.02 0.88 16 27 H 0.08 4.53 5.89 -2.39 -0.01 4.51 16 28 H 0.40 15.88 6.19 -92.70 -0.57 15.30 16 29 H 0.15 4.02 6.46 -2.91 -0.02 4.00 16 30 H 0.41 4.80 7.47 -92.71 -0.69 4.10 16 31 H 0.41 4.79 7.47 -92.71 -0.69 4.10 16 32 H 0.14 4.46 7.65 -2.91 -0.02 4.44 16 33 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 Total: -1.00 -59.80 336.26 1.55 -58.25 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.79 Total: 31.49 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 3.08 Total: -9.74 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -2.56 Total: -91.43 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.07 Total: -29.83 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.15 Total: -1.83 kcal Total: -59.80 1.55 -58.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404144466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.549 kcal (2) G-P(sol) polarization free energy of solvation -59.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds