Wall clock time and date at job start Tue Mar 31 2020 14:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99628 * 2 1 4 4 H 1.48504 * 109.46812 * 239.99485 * 3 2 1 5 5 H 1.48499 * 109.47427 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47145 * 120.00061 * 3 2 1 7 7 C 1.37875 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00154 * 175.15018 * 7 2 1 9 9 C 1.50705 * 120.00001 * 355.42421 * 7 2 1 10 10 C 1.52997 * 115.54916 * 274.74265 * 9 7 2 11 11 N 1.46500 * 109.47038 * 304.60759 * 10 9 7 12 12 C 1.34784 * 120.00240 * 184.82604 * 11 10 9 13 13 O 1.21594 * 119.99380 * 359.97438 * 12 11 10 14 14 N 1.34766 * 120.00049 * 180.02562 * 12 11 10 15 15 C 1.40009 * 119.99706 * 185.28180 * 14 12 11 16 16 C 1.38877 * 120.04791 * 33.64372 * 15 14 12 17 17 C 1.38104 * 119.96347 * 179.97438 * 16 15 14 18 18 C 1.38370 * 120.07100 * 0.02562 * 17 16 15 19 19 Cl 1.73604 * 119.94808 * 179.97438 * 18 17 16 20 20 C 1.38471 * 120.10295 * 359.97438 * 18 17 16 21 21 Cl 1.73602 * 119.98647 * 180.02562 * 20 18 17 22 22 C 1.38240 * 120.03095 * 359.74718 * 20 18 17 23 23 C 1.52998 * 117.49642 * 129.07286 * 9 7 2 24 24 C 1.52995 * 117.49748 * 60.41344 * 9 7 2 25 25 H 0.96996 * 119.99935 * 5.00818 * 1 2 3 26 26 H 1.08996 * 109.47431 * 64.60654 * 10 9 7 27 27 H 1.09000 * 109.47105 * 184.60998 * 10 9 7 28 28 H 0.97001 * 120.00665 * 4.82973 * 11 10 9 29 29 H 0.97003 * 120.00671 * 5.28537 * 14 12 11 30 30 H 1.08003 * 120.01740 * 359.97438 * 16 15 14 31 31 H 1.08001 * 119.96478 * 180.02562 * 17 16 15 32 32 H 1.08006 * 120.03518 * 180.24986 * 22 20 18 33 33 H 1.09001 * 117.50135 * 359.97438 * 23 9 7 34 34 H 1.09003 * 117.49580 * 145.02356 * 23 9 7 35 35 H 1.09006 * 117.49637 * 214.98095 * 24 9 7 36 36 H 1.08997 * 117.50136 * 359.97326 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1958 -0.0785 9 6 1.2547 -2.4970 0.1052 10 6 0.9227 -2.9549 1.5268 11 7 2.1541 -3.0251 2.3173 12 6 2.1195 -3.5004 3.5781 13 8 1.0660 -3.8706 4.0595 14 7 3.2522 -3.5645 4.3055 15 6 3.2376 -4.1594 5.5728 16 6 2.3964 -5.2349 5.8265 17 6 2.3838 -5.8207 7.0770 18 6 3.2080 -5.3370 8.0776 19 17 3.1891 -6.0754 9.6487 20 6 4.0480 -4.2648 7.8278 21 17 5.0813 -3.6608 9.0852 22 6 4.0682 -3.6789 6.5759 23 6 1.5700 -3.5787 -0.9299 24 6 0.2423 -2.8198 -0.9955 25 1 -0.4850 0.8368 -0.0733 26 1 0.2360 -2.2442 1.9865 27 1 0.4568 -3.9397 1.4919 28 1 2.9945 -2.7295 1.9335 29 1 4.0777 -3.1984 3.9511 30 1 1.7524 -5.6129 5.0462 31 1 1.7299 -6.6574 7.2742 32 1 4.7262 -2.8452 6.3798 33 1 2.3196 -3.3477 -1.6868 34 1 1.5405 -4.6166 -0.5981 35 1 -0.6602 -3.3588 -0.7069 36 1 0.1183 -2.0896 -1.7951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404233668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:54 Heat of formation + Delta-G solvation = 6.133564 kcal Electronic energy + Delta-G solvation = -22297.702942 eV Core-core repulsion = 18641.318746 eV Total energy + Delta-G solvation = -3656.384196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59526 -38.93027 -37.05369 -36.69415 -36.54530 -34.49027 -33.51455 -32.05714 -31.11623 -29.48411 -26.34033 -25.27465 -23.35743 -22.72816 -21.23441 -20.51998 -19.54363 -18.29992 -17.85395 -16.87860 -16.12151 -15.96514 -15.21958 -14.96132 -14.65113 -14.46411 -14.17039 -14.10473 -13.94399 -13.39425 -12.79222 -12.68915 -12.36317 -12.06096 -12.03542 -11.69168 -11.66373 -11.23980 -11.06932 -11.06547 -11.03817 -10.62241 -10.30880 -10.19713 -9.93877 -9.57875 -9.14049 -9.11055 -8.62034 -8.49789 -8.25814 -8.03851 -6.16355 -4.27540 0.81080 0.91087 1.65649 2.00636 2.82076 3.14064 3.19745 3.26613 3.27549 3.60858 4.26236 4.40736 4.49967 4.90253 4.95106 5.09676 5.12337 5.27907 5.39515 5.53282 5.88585 5.90604 6.02150 6.16692 6.23851 6.38114 6.44071 6.62672 6.69205 6.72162 7.01875 7.05555 7.17599 7.29702 7.47905 7.71454 8.23581 8.31183 8.73991 8.82447 9.40609 10.90528 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.002655 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.394472 B =10544.758343 C =11527.319358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.180 3.820 11 N -0.707 5.707 12 C 0.696 3.304 13 O -0.584 6.584 14 N -0.691 5.691 15 C 0.204 3.796 16 C -0.107 4.107 17 C -0.076 4.076 18 C -0.057 4.057 19 Cl -0.059 7.059 20 C -0.008 4.008 21 Cl -0.052 7.052 22 C -0.139 4.139 23 C -0.211 4.211 24 C -0.141 4.141 25 H 0.263 0.737 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.402 0.598 29 H 0.410 0.590 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 -9.750 13.122 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.022 3.978 10 C 0.056 3.944 11 N -0.358 5.358 12 C 0.396 3.604 13 O -0.462 6.462 14 N -0.338 5.338 15 C 0.106 3.894 16 C -0.128 4.128 17 C -0.096 4.096 18 C -0.086 4.086 19 Cl -0.030 7.030 20 C -0.036 4.036 21 Cl -0.023 7.023 22 C -0.161 4.161 23 C -0.248 4.248 24 C -0.179 4.179 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.237 0.763 29 H 0.246 0.754 30 H 0.171 0.829 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.653 -9.917 13.716 18.575 hybrid contribution 1.262 1.435 -0.205 1.922 sum 8.915 -8.482 13.511 18.275 Atomic orbital electron populations 1.69970 1.05904 1.27134 1.47738 1.24991 0.94821 0.98983 0.94143 0.86691 0.79677 0.83179 0.78624 1.20253 1.21220 1.20155 1.20280 0.92575 0.88562 1.52866 0.92231 1.19021 0.99567 0.93378 0.85808 1.20917 0.83579 0.98506 0.91372 1.45211 1.13828 1.65571 1.11236 1.16025 0.83071 0.79536 0.81779 1.90910 1.28789 1.55331 1.71134 1.42787 1.12433 1.62543 1.16031 1.17383 0.95983 0.91540 0.84485 1.21342 0.99684 0.93961 0.97781 1.20912 0.97418 1.00083 0.91161 1.20655 1.01537 0.97611 0.88780 1.98370 1.97894 1.81653 1.25082 1.20344 0.96153 0.96412 0.90681 1.98384 1.65607 1.87064 1.51266 1.20659 1.03675 1.01750 0.89986 1.23058 1.00745 0.95553 1.05452 1.22463 0.90812 1.01307 1.03332 0.92695 0.91498 0.93983 0.76328 0.75427 0.82894 0.83793 0.83751 0.90387 0.91676 0.91743 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.26 12.64 55.43 0.70 -22.56 16 2 C 0.08 1.91 5.43 -17.82 -0.10 1.81 16 3 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.51 -12.23 8.12 -34.44 -0.28 -12.51 16 8 H 0.06 1.40 7.82 -52.49 -0.41 0.99 16 9 C 0.02 0.51 1.62 -155.66 -0.25 0.26 16 10 C 0.18 3.78 5.56 -4.04 -0.02 3.75 16 11 N -0.71 -12.54 5.42 -65.23 -0.35 -12.90 16 12 C 0.70 11.89 8.30 -86.92 -0.72 11.17 16 13 O -0.58 -11.85 14.05 5.28 0.07 -11.78 16 14 N -0.69 -8.89 5.35 -14.22 -0.08 -8.96 16 15 C 0.20 2.57 6.27 -83.67 -0.52 2.05 16 16 C -0.11 -1.37 8.65 -39.39 -0.34 -1.71 16 17 C -0.08 -0.85 9.82 -39.58 -0.39 -1.24 16 18 C -0.06 -0.65 6.32 -39.45 -0.25 -0.90 16 19 Cl -0.06 -0.61 27.95 -51.86 -1.45 -2.06 16 20 C -0.01 -0.09 6.32 -39.49 -0.25 -0.34 16 21 Cl -0.05 -0.55 27.95 -51.86 -1.45 -2.00 16 22 C -0.14 -1.53 9.74 -39.37 -0.38 -1.91 16 23 C -0.21 -4.16 9.93 -26.70 -0.27 -4.43 16 24 C -0.14 -3.08 9.16 -26.70 -0.24 -3.32 16 25 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 26 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 27 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 28 H 0.40 6.49 8.00 -40.82 -0.33 6.16 16 29 H 0.41 3.99 8.83 -40.82 -0.36 3.63 16 30 H 0.15 2.17 6.44 -52.48 -0.34 1.83 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -27.82 343.79 -10.36 -38.18 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -3.95 Total: 9.54 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -4.02 Total: -7.32 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.27 Total: -44.42 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.78 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -2.90 Total: -4.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.82 -10.36 -38.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404233668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.312 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds