Wall clock time and date at job start Tue Mar 31 2020 14:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99628 * 2 1 4 4 H 1.48504 * 109.46812 * 239.99485 * 3 2 1 5 5 H 1.48499 * 109.47427 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47145 * 120.00061 * 3 2 1 7 7 C 1.37875 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00154 * 175.15018 * 7 2 1 9 9 C 1.50705 * 120.00001 * 355.42421 * 7 2 1 10 10 C 1.52997 * 115.54916 * 274.74265 * 9 7 2 11 11 N 1.46500 * 109.47038 * 304.60759 * 10 9 7 12 12 C 1.34784 * 120.00240 * 184.82604 * 11 10 9 13 13 O 1.21594 * 119.99380 * 359.97438 * 12 11 10 14 14 N 1.34766 * 120.00049 * 180.02562 * 12 11 10 15 15 C 1.40009 * 119.99706 * 185.28180 * 14 12 11 16 16 C 1.38877 * 120.04791 * 33.64372 * 15 14 12 17 17 C 1.38104 * 119.96347 * 179.97438 * 16 15 14 18 18 C 1.38370 * 120.07100 * 0.02562 * 17 16 15 19 19 Cl 1.73604 * 119.94808 * 179.97438 * 18 17 16 20 20 C 1.38471 * 120.10295 * 359.97438 * 18 17 16 21 21 Cl 1.73602 * 119.98647 * 180.02562 * 20 18 17 22 22 C 1.38240 * 120.03095 * 359.74718 * 20 18 17 23 23 C 1.52998 * 117.49642 * 129.07286 * 9 7 2 24 24 C 1.52995 * 117.49748 * 60.41344 * 9 7 2 25 25 H 0.96996 * 119.99935 * 5.00818 * 1 2 3 26 26 H 1.08996 * 109.47431 * 64.60654 * 10 9 7 27 27 H 1.09000 * 109.47105 * 184.60998 * 10 9 7 28 28 H 0.97001 * 120.00665 * 4.82973 * 11 10 9 29 29 H 0.97003 * 120.00671 * 5.28537 * 14 12 11 30 30 H 1.08003 * 120.01740 * 359.97438 * 16 15 14 31 31 H 1.08001 * 119.96478 * 180.02562 * 17 16 15 32 32 H 1.08006 * 120.03518 * 180.24986 * 22 20 18 33 33 H 1.09001 * 117.50135 * 359.97438 * 23 9 7 34 34 H 1.09003 * 117.49580 * 145.02356 * 23 9 7 35 35 H 1.09006 * 117.49637 * 214.98095 * 24 9 7 36 36 H 1.08997 * 117.50136 * 359.97326 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1958 -0.0785 9 6 1.2547 -2.4970 0.1052 10 6 0.9227 -2.9549 1.5268 11 7 2.1541 -3.0251 2.3173 12 6 2.1195 -3.5004 3.5781 13 8 1.0660 -3.8706 4.0595 14 7 3.2522 -3.5645 4.3055 15 6 3.2376 -4.1594 5.5728 16 6 2.3964 -5.2349 5.8265 17 6 2.3838 -5.8207 7.0770 18 6 3.2080 -5.3370 8.0776 19 17 3.1891 -6.0754 9.6487 20 6 4.0480 -4.2648 7.8278 21 17 5.0813 -3.6608 9.0852 22 6 4.0682 -3.6789 6.5759 23 6 1.5700 -3.5787 -0.9299 24 6 0.2423 -2.8198 -0.9955 25 1 -0.4850 0.8368 -0.0733 26 1 0.2360 -2.2442 1.9865 27 1 0.4568 -3.9397 1.4919 28 1 2.9945 -2.7295 1.9335 29 1 4.0777 -3.1984 3.9511 30 1 1.7524 -5.6129 5.0462 31 1 1.7299 -6.6574 7.2742 32 1 4.7262 -2.8452 6.3798 33 1 2.3196 -3.3477 -1.6868 34 1 1.5405 -4.6166 -0.5981 35 1 -0.6602 -3.3588 -0.7069 36 1 0.1183 -2.0896 -1.7951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404233668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:54 Heat of formation + Delta-G solvation = -8.676689 kcal Electronic energy + Delta-G solvation = -22298.345163 eV Core-core repulsion = 18641.318746 eV Total energy + Delta-G solvation = -3657.026416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.76314 -40.05594 -38.57067 -37.60604 -37.54133 -35.64886 -35.00189 -33.94631 -32.02310 -30.53519 -27.99950 -27.02339 -24.31193 -23.77218 -22.88973 -21.81300 -21.24719 -19.49119 -19.07104 -18.07245 -17.63259 -17.03960 -16.67182 -16.39675 -16.14954 -15.67486 -15.49729 -15.21145 -14.89696 -14.87564 -14.42896 -13.85416 -13.62128 -13.46767 -13.16799 -12.92366 -12.90297 -12.78503 -12.64810 -12.38112 -12.08835 -11.99207 -11.93280 -11.49830 -11.31600 -11.11126 -10.92880 -10.42682 -10.13166 -9.99519 -9.84593 -9.13221 -8.07837 -6.22534 -0.13876 0.01761 0.78185 1.10016 1.45219 1.47031 1.52754 1.64126 1.96615 2.43558 2.51042 3.16636 3.22546 3.56934 3.60691 3.97203 4.06108 4.13829 4.26568 4.54885 4.56446 4.61909 4.69380 4.74528 4.96619 4.98843 5.04706 5.08077 5.20621 5.31911 5.52074 5.59763 5.67881 5.72328 5.79359 5.98673 6.38119 6.85448 7.03898 7.47061 7.49298 8.98586 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.002655 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.394472 B =10544.758343 C =11527.319358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.505 4.505 8 H 0.067 0.933 9 C 0.004 3.996 10 C 0.197 3.803 11 N -0.704 5.704 12 C 0.698 3.302 13 O -0.618 6.618 14 N -0.673 5.673 15 C 0.186 3.814 16 C -0.119 4.119 17 C -0.073 4.073 18 C -0.060 4.060 19 Cl -0.050 7.050 20 C -0.014 4.014 21 Cl -0.043 7.043 22 C -0.128 4.128 23 C -0.179 4.179 24 C -0.154 4.154 25 H 0.258 0.742 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.411 0.589 29 H 0.426 0.574 30 H 0.137 0.863 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.798 -10.219 13.999 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.174 4.174 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.543 4.543 8 H 0.085 0.915 9 C 0.003 3.997 10 C 0.072 3.928 11 N -0.357 5.357 12 C 0.398 3.602 13 O -0.499 6.499 14 N -0.322 5.322 15 C 0.089 3.911 16 C -0.140 4.140 17 C -0.092 4.092 18 C -0.088 4.088 19 Cl -0.021 7.021 20 C -0.043 4.043 21 Cl -0.014 7.014 22 C -0.150 4.150 23 C -0.216 4.216 24 C -0.193 4.193 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.247 0.753 29 H 0.265 0.735 30 H 0.154 0.846 31 H 0.180 0.820 32 H 0.183 0.817 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.764 -10.393 14.609 20.415 hybrid contribution 0.661 1.508 -0.387 1.691 sum 10.425 -8.885 14.223 19.746 Atomic orbital electron populations 1.70104 1.07269 1.27327 1.49661 1.25681 0.95397 1.01973 0.94369 0.85785 0.78380 0.79549 0.78908 1.19639 1.22177 1.19345 1.20629 0.93059 0.89370 1.51256 0.91488 1.19070 1.00135 0.93932 0.86559 1.20472 0.84168 0.97305 0.90830 1.44954 1.13118 1.66075 1.11515 1.16065 0.83597 0.78948 0.81544 1.90891 1.30547 1.56666 1.71762 1.42461 1.11827 1.62071 1.15831 1.17511 0.96970 0.92028 0.84580 1.21298 0.99879 0.94661 0.98140 1.21052 0.97414 1.00314 0.90423 1.20783 1.01306 0.97571 0.89167 1.98375 1.97845 1.81492 1.24413 1.20470 0.96294 0.96449 0.91050 1.98390 1.65265 1.86928 1.50825 1.20794 1.03050 1.01806 0.89302 1.23040 0.98857 0.96002 1.03677 1.22382 0.92176 1.01815 1.02896 0.93278 0.95522 0.93712 0.75264 0.73482 0.84553 0.82011 0.81652 0.89833 0.89297 0.91186 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.38 12.64 21.45 0.27 -49.11 16 2 C 0.03 1.36 5.43 84.65 0.46 1.82 16 3 Si 0.95 40.27 29.54 68.60 2.03 42.29 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.30 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.51 -24.14 8.12 25.60 0.21 -23.93 16 8 H 0.07 3.03 7.82 -2.91 -0.02 3.01 16 9 C 0.00 0.17 1.62 -52.93 -0.09 0.08 16 10 C 0.20 8.32 5.56 86.38 0.48 8.80 16 11 N -0.70 -24.48 5.42 -478.53 -2.59 -27.08 16 12 C 0.70 23.45 8.30 179.06 1.49 24.94 16 13 O -0.62 -25.27 14.05 -4.01 -0.06 -25.33 16 14 N -0.67 -16.36 5.35 -317.16 -1.70 -18.06 16 15 C 0.19 4.43 6.27 38.13 0.24 4.67 16 16 C -0.12 -2.96 8.65 22.39 0.19 -2.77 16 17 C -0.07 -1.52 9.82 22.27 0.22 -1.30 16 18 C -0.06 -1.25 6.32 22.36 0.14 -1.10 16 19 Cl -0.05 -0.96 27.95 -2.72 -0.08 -1.03 16 20 C -0.01 -0.30 6.32 22.33 0.14 -0.15 16 21 Cl -0.04 -0.81 27.95 -2.72 -0.08 -0.89 16 22 C -0.13 -2.55 9.74 22.41 0.22 -2.33 16 23 C -0.18 -6.73 9.93 30.62 0.30 -6.43 16 24 C -0.15 -6.75 9.16 30.62 0.28 -6.47 16 25 H 0.26 13.72 8.32 -92.71 -0.77 12.95 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.04 1.84 8.09 -2.39 -0.02 1.82 16 28 H 0.41 12.65 8.00 -92.71 -0.74 11.91 16 29 H 0.43 7.37 8.83 -92.71 -0.82 6.55 16 30 H 0.14 3.89 6.44 -2.91 -0.02 3.87 16 31 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 36 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -59.47 343.79 1.67 -57.81 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.42 Total: 25.58 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 4.29 Total: -4.19 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -4.02 Total: -94.24 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.06 Total: -25.33 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.15 Total: -1.92 kcal Total: -59.47 1.67 -57.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404233668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.129 kcal (2) G-P(sol) polarization free energy of solvation -59.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds