Wall clock time and date at job start Tue Mar 31 2020 14:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86793 * 120.00407 * 2 1 4 4 H 1.48504 * 109.47245 * 240.00108 * 3 2 1 5 5 H 1.48496 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47617 * 120.00004 * 3 2 1 7 7 C 1.37879 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00161 * 175.25714 * 7 2 1 9 9 C 1.50701 * 119.99975 * 355.53357 * 7 2 1 10 10 C 1.52998 * 115.55137 * 279.21882 * 9 7 2 11 11 N 1.46501 * 109.47566 * 304.13416 * 10 9 7 12 12 C 1.34766 * 120.00612 * 184.36036 * 11 10 9 13 13 O 1.21595 * 119.99834 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00417 * 179.97438 * 12 11 10 15 15 C 1.40002 * 119.99991 * 185.32565 * 14 12 11 16 16 C 1.38823 * 120.07201 * 19.63251 * 15 14 12 17 17 C 1.38231 * 119.93014 * 179.72532 * 16 15 14 18 18 Cl 1.73604 * 119.96674 * 180.27597 * 17 16 15 19 19 C 1.38400 * 120.06657 * 0.54663 * 17 16 15 20 20 C 1.38243 * 120.13390 * 359.72894 * 19 17 16 21 21 C 1.38227 * 120.07106 * 359.97438 * 20 19 17 22 22 Cl 1.73602 * 120.03393 * 179.97438 * 21 20 19 23 23 C 1.53005 * 117.49854 * 133.51277 * 9 7 2 24 24 C 1.52997 * 117.50067 * 64.89210 * 9 7 2 25 25 H 0.96998 * 119.99927 * 5.01212 * 1 2 3 26 26 H 1.09006 * 109.46935 * 64.13102 * 10 9 7 27 27 H 1.09001 * 109.47727 * 184.12886 * 10 9 7 28 28 H 0.97002 * 119.99191 * 4.35802 * 11 10 9 29 29 H 0.96999 * 120.00079 * 5.32217 * 14 12 11 30 30 H 1.07999 * 120.03047 * 359.97360 * 16 15 14 31 31 H 1.08001 * 119.93360 * 179.70218 * 19 17 16 32 32 H 1.08007 * 119.96670 * 179.97438 * 20 19 17 33 33 H 1.08997 * 117.50056 * 359.97438 * 23 9 7 34 34 H 1.09005 * 117.49789 * 145.02180 * 23 9 7 35 35 H 1.09003 * 117.50268 * 214.98250 * 24 9 7 36 36 H 1.09000 * 117.49518 * 359.97214 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0768 9 6 1.2543 -2.4972 0.1028 10 6 0.8265 -2.9034 1.5144 11 7 2.0021 -2.9465 2.3876 12 6 1.8799 -3.3673 3.6621 13 8 0.7938 -3.7107 4.0874 14 7 2.9615 -3.4075 4.4652 15 6 2.8579 -3.9485 5.7523 16 6 1.8042 -4.7952 6.0682 17 6 1.7079 -5.3323 7.3383 18 17 0.3945 -6.3969 7.7324 19 6 2.6544 -5.0176 8.2978 20 6 3.7018 -4.1702 7.9877 21 6 3.8069 -3.6349 6.7177 22 17 5.1221 -2.5703 6.3296 23 6 1.6443 -3.6147 -0.8668 24 6 0.3219 -2.8680 -1.0521 25 1 -0.4850 0.8368 -0.0734 26 1 0.1131 -2.1757 1.9014 27 1 0.3604 -3.8882 1.4837 28 1 2.8685 -2.6722 2.0483 29 1 3.8117 -3.0617 4.1514 30 1 1.0626 -5.0372 5.3213 31 1 2.5745 -5.4346 9.2908 32 1 4.4387 -3.9262 8.7387 33 1 2.4431 -3.4074 -1.5788 34 1 1.5963 -4.6397 -0.4989 35 1 -0.5963 -3.4017 -0.8063 36 1 0.2506 -2.1693 -1.8857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404238407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:04 Heat of formation + Delta-G solvation = 9.868261 kcal Electronic energy + Delta-G solvation = -22634.800344 eV Core-core repulsion = 18978.578097 eV Total energy + Delta-G solvation = -3656.222247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.67123 -38.86338 -36.98037 -36.86543 -36.30523 -34.64000 -33.58433 -32.06300 -30.73255 -29.67471 -26.33036 -25.27101 -23.39520 -22.58790 -21.24672 -20.56222 -19.51470 -18.38726 -17.77353 -16.77439 -16.13040 -15.75433 -15.25060 -15.15104 -14.71166 -14.41376 -14.28540 -13.98908 -13.74245 -13.30270 -12.77969 -12.61014 -12.59860 -12.20063 -12.09977 -11.67790 -11.29039 -11.17836 -11.10785 -11.05144 -11.01532 -10.60778 -10.52759 -10.30493 -9.79253 -9.55397 -9.11701 -8.86151 -8.62319 -8.49456 -8.25008 -7.99861 -6.14868 -4.25348 0.77696 1.06070 1.81368 2.01872 2.76585 3.15137 3.21644 3.28388 3.29379 3.62115 4.28144 4.43288 4.53259 4.84055 5.02202 5.06106 5.14257 5.26671 5.52500 5.69089 5.87795 5.94353 6.04548 6.18762 6.24604 6.39710 6.46056 6.63404 6.69351 6.72861 7.02629 7.06782 7.18915 7.30749 7.45726 7.73959 8.25338 8.30038 8.75924 8.81315 9.42669 10.92467 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.003447 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.386122 B = 8119.890072 C = 9409.626865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.179 3.821 11 N -0.704 5.704 12 C 0.696 3.304 13 O -0.579 6.579 14 N -0.682 5.682 15 C 0.212 3.788 16 C -0.127 4.127 17 C -0.006 4.006 18 Cl -0.062 7.062 19 C -0.135 4.135 20 C -0.073 4.073 21 C -0.082 4.082 22 Cl -0.061 7.061 23 C -0.210 4.210 24 C -0.146 4.146 25 H 0.263 0.737 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.402 0.598 29 H 0.411 0.589 30 H 0.180 0.820 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.808 -9.178 14.082 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.025 3.975 10 C 0.056 3.944 11 N -0.355 5.355 12 C 0.397 3.603 13 O -0.458 6.458 14 N -0.328 5.328 15 C 0.112 3.888 16 C -0.148 4.148 17 C -0.033 4.033 18 Cl -0.033 7.033 19 C -0.155 4.155 20 C -0.093 4.093 21 C -0.113 4.113 22 Cl -0.033 7.033 23 C -0.247 4.247 24 C -0.184 4.184 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.237 0.763 29 H 0.248 0.752 30 H 0.197 0.803 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.599 -9.302 14.331 18.316 hybrid contribution 1.262 1.405 -0.393 1.929 sum 7.861 -7.898 13.939 17.845 Atomic orbital electron populations 1.69957 1.05899 1.27142 1.47697 1.24976 0.94800 0.98939 0.94142 0.86702 0.79695 0.83216 0.78647 1.20245 1.21220 1.20148 1.20289 0.92564 0.88532 1.52884 0.92209 1.19017 0.99255 0.93102 0.86166 1.20930 0.85089 0.98782 0.89649 1.45232 1.14309 1.67208 1.08788 1.16015 0.83247 0.79422 0.81662 1.90795 1.25356 1.55303 1.74348 1.42832 1.13634 1.63550 1.12767 1.17126 0.94319 0.93296 0.84063 1.21703 0.99718 0.96187 0.97222 1.20825 0.91499 0.96111 0.94898 1.98377 1.47246 1.63760 1.93944 1.20886 0.94338 1.00605 0.99660 1.20714 0.98257 0.96181 0.94128 1.20648 0.94313 1.01414 0.94898 1.98372 1.46575 1.64140 1.94171 1.23023 0.99825 0.95714 1.06141 1.22490 0.91411 1.01716 1.02766 0.92696 0.91105 0.93956 0.76294 0.75195 0.80287 0.84266 0.83874 0.90378 0.91595 0.91670 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.46 12.86 55.43 0.71 -22.74 16 2 C 0.08 1.95 5.44 -17.82 -0.10 1.85 16 3 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.51 -12.40 8.13 -34.44 -0.28 -12.68 16 8 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 9 C 0.03 0.57 1.53 -155.66 -0.24 0.33 16 10 C 0.18 3.85 5.56 -4.04 -0.02 3.83 16 11 N -0.70 -13.08 5.42 -65.22 -0.35 -13.44 16 12 C 0.70 12.58 8.41 -86.93 -0.73 11.85 16 13 O -0.58 -12.04 13.23 5.28 0.07 -11.97 16 14 N -0.68 -9.93 5.26 -14.20 -0.07 -10.01 16 15 C 0.21 2.96 6.50 -83.64 -0.54 2.41 16 16 C -0.13 -1.85 8.57 -39.37 -0.34 -2.18 16 17 C -0.01 -0.07 6.32 -39.52 -0.25 -0.32 16 18 Cl -0.06 -0.73 28.95 -51.86 -1.50 -2.23 16 19 C -0.13 -1.34 9.82 -39.52 -0.39 -1.72 16 20 C -0.07 -0.71 9.82 -39.58 -0.39 -1.10 16 21 C -0.08 -0.97 6.34 -39.32 -0.25 -1.21 16 22 Cl -0.06 -0.66 27.72 -51.86 -1.44 -2.10 16 23 C -0.21 -4.19 9.93 -26.73 -0.27 -4.46 16 24 C -0.15 -3.20 9.43 -26.73 -0.25 -3.45 16 25 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 26 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 27 H 0.04 0.89 8.10 -51.93 -0.42 0.47 16 28 H 0.40 6.88 8.02 -40.82 -0.33 6.55 16 29 H 0.41 5.10 7.65 -40.82 -0.31 4.79 16 30 H 0.18 3.02 5.41 -52.49 -0.28 2.74 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 33 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -27.46 342.22 -10.34 -37.81 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -3.85 Total: 11.42 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -4.04 Total: -6.86 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.28 Total: -46.19 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.07 Total: -11.97 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -2.94 Total: -4.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.46 -10.34 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404238407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.673 kcal (2) G-P(sol) polarization free energy of solvation -27.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds