Wall clock time and date at job start Tue Mar 31 2020 14:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86793 * 120.00407 * 2 1 4 4 H 1.48504 * 109.47245 * 240.00108 * 3 2 1 5 5 H 1.48496 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47617 * 120.00004 * 3 2 1 7 7 C 1.37879 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00161 * 175.25714 * 7 2 1 9 9 C 1.50701 * 119.99975 * 355.53357 * 7 2 1 10 10 C 1.52998 * 115.55137 * 279.21882 * 9 7 2 11 11 N 1.46501 * 109.47566 * 304.13416 * 10 9 7 12 12 C 1.34766 * 120.00612 * 184.36036 * 11 10 9 13 13 O 1.21595 * 119.99834 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00417 * 179.97438 * 12 11 10 15 15 C 1.40002 * 119.99991 * 185.32565 * 14 12 11 16 16 C 1.38823 * 120.07201 * 19.63251 * 15 14 12 17 17 C 1.38231 * 119.93014 * 179.72532 * 16 15 14 18 18 Cl 1.73604 * 119.96674 * 180.27597 * 17 16 15 19 19 C 1.38400 * 120.06657 * 0.54663 * 17 16 15 20 20 C 1.38243 * 120.13390 * 359.72894 * 19 17 16 21 21 C 1.38227 * 120.07106 * 359.97438 * 20 19 17 22 22 Cl 1.73602 * 120.03393 * 179.97438 * 21 20 19 23 23 C 1.53005 * 117.49854 * 133.51277 * 9 7 2 24 24 C 1.52997 * 117.50067 * 64.89210 * 9 7 2 25 25 H 0.96998 * 119.99927 * 5.01212 * 1 2 3 26 26 H 1.09006 * 109.46935 * 64.13102 * 10 9 7 27 27 H 1.09001 * 109.47727 * 184.12886 * 10 9 7 28 28 H 0.97002 * 119.99191 * 4.35802 * 11 10 9 29 29 H 0.96999 * 120.00079 * 5.32217 * 14 12 11 30 30 H 1.07999 * 120.03047 * 359.97360 * 16 15 14 31 31 H 1.08001 * 119.93360 * 179.70218 * 19 17 16 32 32 H 1.08007 * 119.96670 * 179.97438 * 20 19 17 33 33 H 1.08997 * 117.50056 * 359.97438 * 23 9 7 34 34 H 1.09005 * 117.49789 * 145.02180 * 23 9 7 35 35 H 1.09003 * 117.50268 * 214.98250 * 24 9 7 36 36 H 1.09000 * 117.49518 * 359.97214 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0768 9 6 1.2543 -2.4972 0.1028 10 6 0.8265 -2.9034 1.5144 11 7 2.0021 -2.9465 2.3876 12 6 1.8799 -3.3673 3.6621 13 8 0.7938 -3.7107 4.0874 14 7 2.9615 -3.4075 4.4652 15 6 2.8579 -3.9485 5.7523 16 6 1.8042 -4.7952 6.0682 17 6 1.7079 -5.3323 7.3383 18 17 0.3945 -6.3969 7.7324 19 6 2.6544 -5.0176 8.2978 20 6 3.7018 -4.1702 7.9877 21 6 3.8069 -3.6349 6.7177 22 17 5.1221 -2.5703 6.3296 23 6 1.6443 -3.6147 -0.8668 24 6 0.3219 -2.8680 -1.0521 25 1 -0.4850 0.8368 -0.0734 26 1 0.1131 -2.1757 1.9014 27 1 0.3604 -3.8882 1.4837 28 1 2.8685 -2.6722 2.0483 29 1 3.8117 -3.0617 4.1514 30 1 1.0626 -5.0372 5.3213 31 1 2.5745 -5.4346 9.2908 32 1 4.4387 -3.9262 8.7387 33 1 2.4431 -3.4074 -1.5788 34 1 1.5963 -4.6397 -0.4989 35 1 -0.5963 -3.4017 -0.8063 36 1 0.2506 -2.1693 -1.8857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404238407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:03 Heat of formation + Delta-G solvation = -4.765268 kcal Electronic energy + Delta-G solvation = -22635.434901 eV Core-core repulsion = 18978.578097 eV Total energy + Delta-G solvation = -3656.856805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.90128 -40.02775 -38.56200 -37.84903 -37.24841 -35.85735 -35.12537 -33.98784 -31.67457 -30.74485 -28.02414 -27.06159 -24.43612 -23.59964 -22.92405 -21.93363 -21.25759 -19.60787 -19.07547 -18.01683 -17.61420 -16.94795 -16.67154 -16.47143 -16.27937 -15.78848 -15.57091 -15.25917 -14.84176 -14.77924 -14.44301 -13.81978 -13.51202 -13.50126 -13.45100 -13.12305 -12.94547 -12.80294 -12.39992 -12.31515 -12.07478 -12.05707 -12.01193 -11.57377 -11.41403 -11.10693 -10.93746 -10.45907 -10.15337 -9.92641 -9.77432 -9.14288 -8.09437 -6.23493 -0.16092 0.12016 0.90250 1.08056 1.43558 1.45486 1.50795 1.51527 1.92679 2.42264 2.50528 3.08558 3.21082 3.54251 3.63003 4.03070 4.06585 4.10991 4.23902 4.53737 4.59918 4.67889 4.71922 4.76143 4.97653 4.99494 5.02868 5.16893 5.17959 5.29112 5.48824 5.58175 5.63560 5.68340 5.78175 5.88042 6.36666 6.83339 6.93469 7.39284 7.46953 8.97470 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.003447 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.386122 B = 8119.890072 C = 9409.626865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.029 3.971 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.505 4.505 8 H 0.065 0.935 9 C 0.005 3.995 10 C 0.196 3.804 11 N -0.702 5.702 12 C 0.697 3.303 13 O -0.610 6.610 14 N -0.670 5.670 15 C 0.186 3.814 16 C -0.148 4.148 17 C -0.014 4.014 18 Cl -0.061 7.061 19 C -0.119 4.119 20 C -0.062 4.062 21 C -0.080 4.080 22 Cl -0.052 7.052 23 C -0.178 4.178 24 C -0.157 4.157 25 H 0.259 0.741 26 H 0.030 0.970 27 H 0.044 0.956 28 H 0.410 0.590 29 H 0.421 0.579 30 H 0.151 0.849 31 H 0.172 0.828 32 H 0.180 0.820 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.186 -9.665 15.883 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.172 4.172 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.543 4.543 8 H 0.083 0.917 9 C 0.004 3.996 10 C 0.072 3.928 11 N -0.355 5.355 12 C 0.398 3.602 13 O -0.491 6.491 14 N -0.317 5.317 15 C 0.088 3.912 16 C -0.169 4.169 17 C -0.042 4.042 18 Cl -0.032 7.032 19 C -0.138 4.138 20 C -0.081 4.081 21 C -0.110 4.110 22 Cl -0.023 7.023 23 C -0.215 4.215 24 C -0.195 4.195 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.246 0.754 29 H 0.260 0.740 30 H 0.168 0.832 31 H 0.190 0.810 32 H 0.197 0.803 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.037 -9.800 16.154 20.945 hybrid contribution 0.558 1.488 -0.855 1.804 sum 9.595 -8.313 15.299 19.881 Atomic orbital electron populations 1.70087 1.07234 1.27354 1.49534 1.25650 0.95371 1.01870 0.94321 0.85808 0.78431 0.79670 0.78875 1.19564 1.22007 1.19539 1.20609 0.92938 0.89372 1.51386 0.91671 1.19060 1.00097 0.93733 0.86736 1.20498 0.85340 0.97504 0.89490 1.45003 1.13744 1.67758 1.08964 1.16070 0.83637 0.78929 0.81578 1.90794 1.26939 1.56450 1.74901 1.42554 1.12959 1.63371 1.12848 1.17274 0.95467 0.94396 0.84105 1.21477 0.99870 0.97777 0.97824 1.20955 0.92243 0.96292 0.94680 1.98376 1.47412 1.63673 1.93783 1.21278 0.92922 0.99341 1.00289 1.21162 0.98434 0.94676 0.93792 1.20787 0.93876 1.01287 0.95090 1.98380 1.45866 1.63814 1.94225 1.23010 0.98264 0.95963 1.04264 1.22419 0.92790 1.02247 1.02060 0.93242 0.95145 0.93726 0.75395 0.74017 0.83207 0.81014 0.80293 0.89701 0.89347 0.91097 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.95 12.86 21.45 0.28 -49.68 16 2 C 0.03 1.50 5.44 84.66 0.46 1.96 16 3 Si 0.95 41.08 29.54 68.60 2.03 43.11 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.51 -24.71 8.13 25.60 0.21 -24.50 16 8 H 0.07 3.05 7.82 -2.91 -0.02 3.03 16 9 C 0.00 0.20 1.53 -52.93 -0.08 0.12 16 10 C 0.20 8.63 5.56 86.38 0.48 9.11 16 11 N -0.70 -26.31 5.42 -478.54 -2.59 -28.91 16 12 C 0.70 25.63 8.41 179.06 1.51 27.14 16 13 O -0.61 -26.33 13.23 -4.02 -0.05 -26.38 16 14 N -0.67 -19.35 5.26 -317.10 -1.67 -21.02 16 15 C 0.19 5.06 6.50 38.15 0.25 5.31 16 16 C -0.15 -4.31 8.57 22.41 0.19 -4.12 16 17 C -0.01 -0.33 6.32 22.31 0.14 -0.19 16 18 Cl -0.06 -1.38 28.95 -2.72 -0.08 -1.46 16 19 C -0.12 -1.97 9.82 22.31 0.22 -1.75 16 20 C -0.06 -0.97 9.82 22.27 0.22 -0.75 16 21 C -0.08 -1.70 6.34 22.44 0.14 -1.56 16 22 Cl -0.05 -0.99 27.72 -2.72 -0.08 -1.07 16 23 C -0.18 -6.86 9.93 30.59 0.30 -6.56 16 24 C -0.16 -6.94 9.43 30.59 0.29 -6.65 16 25 H 0.26 13.91 8.32 -92.71 -0.77 13.14 16 26 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 28 H 0.41 13.85 8.02 -92.71 -0.74 13.11 16 29 H 0.42 10.09 7.65 -92.71 -0.71 9.38 16 30 H 0.15 5.31 5.41 -2.91 -0.02 5.30 16 31 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 35 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -60.48 342.22 1.86 -58.62 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -0.30 Total: 29.22 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 4.33 Total: -2.43 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -3.99 Total: -99.60 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.38 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.15 Total: -2.53 kcal Total: -60.48 1.86 -58.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404238407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.858 kcal (2) G-P(sol) polarization free energy of solvation -60.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds