Wall clock time and date at job start Tue Mar 31 2020 14:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31693 * 119.69949 * 2 1 4 4 C 1.32028 * 121.87409 * 180.27168 * 3 2 1 5 5 Cl 1.73600 * 119.48392 * 179.72566 * 4 3 2 6 6 C 1.38663 * 121.02826 * 359.74643 * 4 3 2 7 7 Cl 1.73606 * 120.36600 * 180.02562 * 6 4 3 8 8 C 1.38364 * 119.27296 * 359.97438 * 6 4 3 9 9 C 1.39513 * 119.69266 * 179.73427 * 2 1 3 10 10 C 1.47795 * 120.53689 * 359.97438 * 9 2 1 11 11 O 1.21556 * 119.99923 * 1.89375 * 10 9 2 12 12 N 1.34774 * 119.99944 * 181.89835 * 10 9 2 13 13 C 1.46504 * 120.00031 * 185.04722 * 12 10 9 14 14 C 1.52998 * 109.46873 * 184.98569 * 13 12 10 15 15 C 1.50692 * 115.55466 * 54.31217 * 14 13 12 16 16 H 1.08000 * 120.00048 * 215.37619 * 15 14 13 17 17 C 1.37879 * 119.99815 * 35.09670 * 15 14 13 18 18 N 1.31515 * 120.00379 * 356.48050 * 17 15 14 19 19 Si 1.86803 * 119.99858 * 176.47824 * 17 15 14 20 20 H 1.48496 * 109.47112 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47072 * 120.00130 * 19 17 15 22 22 H 1.48497 * 109.47191 * 240.00087 * 19 17 15 23 23 C 1.53004 * 117.49652 * 199.98175 * 14 13 12 24 24 C 1.52999 * 117.49714 * 268.63547 * 14 13 12 25 25 H 1.08999 * 109.47349 * 262.68828 * 1 2 3 26 26 H 1.09004 * 109.46508 * 22.67902 * 1 2 3 27 27 H 1.08996 * 109.47466 * 142.68189 * 1 2 3 28 28 H 1.08000 * 120.85625 * 180.02562 * 8 6 4 29 29 H 0.97001 * 119.99883 * 5.03291 * 12 10 9 30 30 H 1.09001 * 109.47247 * 64.97879 * 13 12 10 31 31 H 1.09002 * 109.46667 * 304.98124 * 13 12 10 32 32 H 0.96996 * 119.99694 * 184.99991 * 18 17 15 33 33 H 1.09000 * 117.49889 * 215.00230 * 23 14 13 34 34 H 1.09011 * 117.49857 * 0.02562 * 23 14 13 35 35 H 1.09003 * 117.50196 * 359.97438 * 24 14 13 36 36 H 1.09000 * 117.49773 * 144.97352 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1595 1.1439 0.0000 4 6 3.4788 1.1940 -0.0053 5 17 4.2753 2.7366 -0.0122 6 6 4.2381 0.0338 -0.0059 7 17 5.9721 0.1197 -0.0123 8 6 3.5988 -1.1932 -0.0003 9 6 2.1981 -1.2119 0.0056 10 6 1.4643 -2.4948 0.0121 11 8 0.2492 -2.5001 -0.0222 12 7 2.1423 -3.6587 0.0562 13 6 1.4223 -4.9303 -0.0488 14 6 2.4011 -6.0888 0.1530 15 6 3.2121 -6.0409 1.4222 16 1 4.2326 -6.3945 1.4246 17 6 2.6532 -5.5403 2.5789 18 7 1.4368 -5.0409 2.5589 19 14 3.6239 -5.5714 4.1746 20 1 4.9562 -6.1806 3.9318 21 1 3.7973 -4.1843 4.6757 22 1 2.8897 -6.3745 5.1851 23 6 1.9828 -7.4658 -0.3665 24 6 3.0718 -6.6720 -1.0924 25 1 -0.3634 -0.1308 1.0193 26 1 -0.3632 0.9483 -0.3963 27 1 -0.3634 -0.8172 -0.6230 28 1 4.1650 -2.1129 -0.0002 29 1 3.1070 -3.6545 0.1572 30 1 0.9649 -5.0086 -1.0352 31 1 0.6465 -4.9728 0.7157 32 1 1.0709 -4.6232 3.3542 33 1 2.2941 -8.3370 0.2098 34 1 1.0103 -7.5462 -0.8524 35 1 2.8153 -6.2307 -2.0555 36 1 4.0998 -7.0206 -0.9938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404676878.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:11 Heat of formation + Delta-G solvation = 1.593562 kcal Electronic energy + Delta-G solvation = -23277.924826 eV Core-core repulsion = 19621.343761 eV Total energy + Delta-G solvation = -3656.581065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.03988 -40.13500 -38.47907 -37.94490 -37.85176 -35.25832 -34.18883 -33.73214 -33.42435 -29.19840 -27.78375 -27.19644 -25.56696 -23.64004 -22.94706 -21.61244 -21.10455 -19.24036 -18.62454 -18.16635 -17.55568 -16.81325 -16.62813 -16.55269 -16.05000 -15.66021 -15.36464 -14.86294 -14.73687 -14.32846 -14.16630 -14.00750 -13.56928 -13.37008 -13.21236 -13.15398 -12.94012 -12.69400 -12.56597 -12.53092 -12.27835 -12.14650 -12.00611 -11.49755 -11.31365 -11.10081 -10.90065 -10.67408 -10.52161 -10.14124 -10.03876 -9.61852 -7.93228 -6.18123 -0.85772 -0.38458 0.37175 0.68185 1.39563 1.47648 1.54001 1.65027 2.27486 2.41180 2.48261 2.99593 3.06692 3.32402 3.35963 3.56674 3.68344 3.90177 4.24558 4.30713 4.45594 4.57341 4.72346 4.73513 4.78078 4.84915 4.86921 5.00724 5.15979 5.30208 5.37644 5.56834 5.63947 5.84967 6.03490 6.23667 6.39544 6.74613 6.91023 7.39870 7.47475 8.92176 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013028 B = 0.004173 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.779422 B = 6708.315015 C = 7322.379977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.202 3.798 3 N -0.478 5.478 4 C 0.199 3.801 5 Cl 0.006 6.994 6 C -0.092 4.092 7 Cl -0.016 7.016 8 C -0.012 4.012 9 C -0.172 4.172 10 C 0.553 3.447 11 O -0.563 6.563 12 N -0.668 5.668 13 C 0.175 3.825 14 C 0.007 3.993 15 C -0.501 4.501 16 H 0.058 0.942 17 C 0.040 3.960 18 N -0.886 5.886 19 Si 0.939 3.061 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.290 1.290 23 C -0.200 4.200 24 C -0.186 4.186 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.175 0.825 29 H 0.402 0.598 30 H 0.026 0.974 31 H 0.087 0.913 32 H 0.256 0.744 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 11.266 -6.118 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.064 3.936 3 N -0.190 5.190 4 C 0.033 3.967 5 Cl 0.035 6.965 6 C -0.123 4.123 7 Cl 0.013 6.987 8 C -0.039 4.039 9 C -0.178 4.178 10 C 0.339 3.661 11 O -0.446 6.446 12 N -0.315 5.315 13 C 0.052 3.948 14 C 0.006 3.994 15 C -0.538 4.538 16 H 0.076 0.924 17 C -0.162 4.162 18 N -0.523 5.523 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.217 1.217 23 C -0.239 4.239 24 C -0.223 4.223 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.123 0.877 28 H 0.193 0.807 29 H 0.238 0.762 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.630 12.161 -6.013 14.335 hybrid contribution 1.504 -0.813 1.175 2.075 sum 6.135 11.349 -4.838 13.778 Atomic orbital electron populations 1.21133 0.85633 1.04940 1.04678 1.21697 0.98469 0.85172 0.88304 1.67177 1.07062 1.29390 1.15393 1.21915 0.89671 0.88110 0.97042 1.98428 1.76368 1.25860 1.95841 1.21446 0.88184 0.93313 1.09324 1.98407 1.05077 1.98502 1.96669 1.21943 0.93019 0.98098 0.90821 1.20959 0.93868 0.95543 1.07410 1.17861 0.86958 0.83573 0.77725 1.90644 1.14025 1.87204 1.52685 1.45485 1.11114 1.05115 1.69742 1.20836 0.95384 0.80830 0.97798 1.19279 0.97021 0.90571 0.92536 1.20715 0.98142 1.42313 0.92645 0.92418 1.25479 0.95234 0.94737 1.00730 1.70012 1.15462 1.37820 1.28997 0.85801 0.79264 0.77428 0.80919 1.19107 1.21087 1.21667 1.22962 0.98093 0.97456 1.05358 1.22963 0.96860 1.06033 0.96412 0.89765 0.89213 0.87747 0.80743 0.76246 0.95544 0.89533 0.93388 0.90693 0.90436 0.89439 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.01 8.96 71.24 0.64 -2.37 16 2 C 0.20 6.10 6.82 42.89 0.29 6.39 16 3 N -0.48 -13.81 10.24 -173.70 -1.78 -15.58 16 4 C 0.20 5.24 7.28 84.76 0.62 5.85 16 5 Cl 0.01 0.14 28.10 -2.72 -0.08 0.06 16 6 C -0.09 -2.32 6.34 22.40 0.14 -2.18 16 7 Cl -0.02 -0.33 27.97 -2.72 -0.08 -0.41 16 8 C -0.01 -0.33 9.44 22.75 0.21 -0.11 16 9 C -0.17 -5.42 5.89 -19.99 -0.12 -5.54 16 10 C 0.55 20.91 7.74 86.77 0.67 21.58 16 11 O -0.56 -23.95 13.24 -3.89 -0.05 -24.01 16 12 N -0.67 -25.77 4.98 -466.02 -2.32 -28.10 16 13 C 0.18 7.57 4.62 86.38 0.40 7.97 16 14 C 0.01 0.28 2.04 -52.93 -0.11 0.17 16 15 C -0.50 -23.56 8.44 25.60 0.22 -23.35 16 16 H 0.06 2.72 7.82 -2.91 -0.02 2.70 16 17 C 0.04 1.94 5.30 84.65 0.45 2.39 16 18 N -0.89 -45.32 10.12 21.45 0.22 -45.11 16 19 Si 0.94 39.72 29.54 68.60 2.03 41.74 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 C -0.20 -7.93 9.96 30.62 0.30 -7.63 16 24 C -0.19 -6.72 9.92 30.62 0.30 -6.42 16 25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.10 3.27 5.68 -2.39 -0.01 3.25 16 28 H 0.18 4.14 6.55 -2.91 -0.02 4.12 16 29 H 0.40 14.33 6.25 -92.71 -0.58 13.75 16 30 H 0.03 1.10 8.09 -2.39 -0.02 1.08 16 31 H 0.09 4.43 5.88 -2.39 -0.01 4.42 16 32 H 0.26 13.06 8.32 -92.71 -0.77 12.29 16 33 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.08 2.89 8.14 -2.38 -0.02 2.87 16 35 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -52.96 335.70 2.53 -50.43 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.56 Total: 24.20 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 4.02 Total: -3.24 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -3.88 Total: -88.78 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.74 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.15 Total: -0.35 kcal Total: -52.96 2.53 -50.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404676878.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.028 kcal (2) G-P(sol) polarization free energy of solvation -52.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds