Wall clock time and date at job start Tue Mar 31 2020 14:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46936 * 2 1 4 4 H 1.08996 * 109.47175 * 305.33735 * 3 2 1 5 5 C 1.53004 * 109.47102 * 185.34046 * 3 2 1 6 6 O 1.42895 * 109.47324 * 305.00373 * 5 3 2 7 7 C 1.35654 * 117.00441 * 180.02562 * 6 5 3 8 8 C 1.38534 * 120.26624 * 269.71833 * 7 6 5 9 9 Br 1.89101 * 119.98334 * 0.02562 * 8 7 6 10 10 C 1.38374 * 120.03509 * 179.78478 * 8 7 6 11 11 C 1.38821 * 120.57842 * 0.47138 * 10 8 7 12 12 C 1.36491 * 120.54664 * 359.78545 * 11 10 8 13 13 C 1.40732 * 119.94366 * 359.97438 * 12 11 10 14 14 C 1.41159 * 120.28198 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99843 * 209.94779 * 14 13 12 16 16 C 1.39933 * 120.00268 * 29.93747 * 14 13 12 17 17 N 1.30865 * 120.00031 * 9.33049 * 16 14 13 18 18 Si 1.86799 * 120.00017 * 189.32765 * 16 14 13 19 19 H 1.48501 * 109.47158 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47229 * 120.00211 * 18 16 14 21 21 H 1.48507 * 109.47138 * 240.00242 * 18 16 14 22 22 O 1.42902 * 109.47363 * 65.34260 * 3 2 1 23 23 C 1.42899 * 113.99863 * 258.28145 * 22 3 2 24 24 H 1.09002 * 109.46975 * 177.00271 * 1 2 3 25 25 H 1.09001 * 109.46927 * 57.00943 * 1 2 3 26 26 H 1.08994 * 109.47266 * 297.00454 * 1 2 3 27 27 H 1.09005 * 109.47029 * 119.99777 * 2 1 3 28 28 H 1.08995 * 109.47484 * 239.99927 * 2 1 3 29 29 H 1.09008 * 109.46753 * 64.99972 * 5 3 2 30 30 H 1.08995 * 109.47271 * 184.99747 * 5 3 2 31 31 H 1.07993 * 119.70944 * 180.23238 * 10 8 7 32 32 H 1.07999 * 119.72936 * 179.76486 * 11 10 8 33 33 H 1.08003 * 120.02283 * 179.97438 * 12 11 10 34 34 H 0.96992 * 119.99868 * 179.97438 * 17 16 14 35 35 H 1.09003 * 109.47035 * 294.57633 * 23 22 3 36 36 H 1.09000 * 109.47259 * 54.57452 * 23 22 3 37 37 H 1.08992 * 109.46978 * 174.58120 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6007 1.9832 -0.8383 5 6 3.5641 1.4447 -0.1343 6 8 4.1344 0.6387 0.8987 7 6 5.4867 0.5345 0.9228 8 6 6.1214 -0.4808 0.2260 9 35 5.1017 -1.7279 -0.7644 10 6 7.5014 -0.5799 0.2504 11 6 8.2618 0.3260 0.9772 12 6 7.6608 1.3323 1.6766 13 6 6.2591 1.4572 1.6634 14 6 5.6301 2.4949 2.3846 15 1 4.6373 2.3498 2.7845 16 6 6.2928 3.7115 2.5816 17 7 7.4117 3.9571 1.9488 18 14 5.5804 4.9850 3.7477 19 1 4.3179 4.4678 4.3343 20 1 6.5541 5.2607 4.8346 21 1 5.3029 6.2389 3.0019 22 8 1.6688 2.0790 1.2244 23 6 0.5407 2.9485 1.1088 24 1 -0.3633 -1.0263 -0.0537 25 1 -0.3633 0.5596 -0.8620 26 1 -0.3633 0.4666 0.9156 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8437 1.0399 -1.1070 30 1 3.9352 2.4656 -0.0453 31 1 7.9909 -1.3712 -0.2978 32 1 9.3377 0.2336 0.9897 33 1 8.2606 2.0322 2.2395 34 1 7.8708 4.8005 2.0851 35 1 0.7953 3.7904 0.4651 36 1 -0.2971 2.4012 0.6767 37 1 0.2634 3.3171 2.0963 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418982412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:16 Heat of formation + Delta-G solvation = -73.138331 kcal Electronic energy + Delta-G solvation = -20742.295207 eV Core-core repulsion = 17530.877017 eV Total energy + Delta-G solvation = -3211.418190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.80102 -37.87180 -35.82515 -33.83251 -32.97435 -30.90126 -29.78270 -28.82228 -27.46888 -26.00916 -25.25230 -23.09510 -21.02790 -20.99280 -20.26465 -17.37557 -16.86321 -15.91209 -15.58622 -15.27837 -14.92234 -14.48286 -14.24282 -13.84857 -13.22325 -12.98222 -12.82912 -12.68429 -12.52381 -11.99828 -11.67610 -11.51520 -11.36769 -11.20927 -11.14495 -10.98756 -10.70063 -10.53411 -10.39160 -10.13378 -9.89755 -9.72662 -9.34460 -9.24943 -9.06526 -8.63891 -7.46686 -7.38588 -6.82743 -4.46703 2.48492 2.58162 2.69175 3.05107 3.09622 3.14069 3.90299 4.13660 4.43116 4.74857 5.09506 5.22713 5.37263 5.48280 5.50371 5.56592 5.72193 5.84484 5.88183 6.01421 6.12590 6.15333 6.17263 6.37495 6.43458 6.46810 6.69082 6.81590 6.87356 7.06880 7.13282 7.41155 7.59922 7.74087 7.86870 8.01569 8.35277 8.63532 8.73467 8.99625 10.09580 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.007601 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.987536 B = 3682.814308 C = 6293.568582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.098 3.902 4 H 0.065 0.935 5 C 0.065 3.935 6 O -0.299 6.299 7 C -0.005 4.005 8 C -0.061 4.061 9 Br -0.102 7.102 10 C -0.207 4.207 11 C -0.106 4.106 12 C -0.137 4.137 13 C 0.103 3.897 14 C -0.432 4.432 15 H 0.091 0.909 16 C 0.071 3.929 17 N -0.799 5.799 18 Si 0.913 3.087 19 H -0.256 1.256 20 H -0.272 1.272 21 H -0.274 1.274 22 O -0.363 6.363 23 C 0.025 3.975 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.281 0.719 35 H 0.035 0.965 36 H 0.039 0.961 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 -3.335 -4.577 9.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.040 3.960 4 H 0.083 0.917 5 C -0.011 4.011 6 O -0.215 6.215 7 C -0.052 4.052 8 C -0.140 4.140 9 Br -0.017 7.017 10 C -0.228 4.228 11 C -0.125 4.125 12 C -0.156 4.156 13 C 0.099 3.901 14 C -0.461 4.461 15 H 0.109 0.891 16 C -0.146 4.146 17 N -0.424 5.424 18 Si 0.737 3.263 19 H -0.180 1.180 20 H -0.198 1.198 21 H -0.200 1.200 22 O -0.282 6.282 23 C -0.072 4.072 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.874 -3.717 -4.678 9.884 hybrid contribution 0.051 1.166 0.138 1.175 sum -7.822 -2.551 -4.540 9.397 Atomic orbital electron populations 1.21859 0.96672 1.01287 1.01192 1.21860 0.94839 0.96837 1.03771 1.22238 0.93796 0.93237 0.86753 0.91734 1.22693 0.91159 0.96168 0.91068 1.86017 1.16847 1.68243 1.50442 1.18359 0.83197 0.99557 1.04068 1.21816 0.93900 0.96808 1.01455 1.96398 1.73686 1.58600 1.73064 1.20210 0.90925 1.03347 1.08319 1.20461 0.97808 0.95733 0.98516 1.21197 0.95029 0.97891 1.01513 1.17836 0.91550 0.90693 0.90068 1.19646 1.02730 0.96118 1.27633 0.89065 1.25985 0.94175 0.99701 0.94786 1.69795 1.14561 1.24200 1.33890 0.86158 0.80373 0.79571 0.80171 1.17965 1.19756 1.19977 1.88125 1.47592 1.60903 1.31563 1.22866 0.89015 0.93130 1.02165 0.92945 0.93552 0.92462 0.89807 0.91329 0.93255 0.92595 0.88116 0.88371 0.85493 0.90783 0.94599 0.94221 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.84 37.16 0.33 -1.54 16 2 C -0.14 -2.06 5.35 -26.73 -0.14 -2.20 16 3 C 0.10 1.61 2.67 -26.73 -0.07 1.54 16 4 H 0.06 0.90 7.69 -51.93 -0.40 0.50 16 5 C 0.06 1.28 5.93 37.16 0.22 1.50 16 6 O -0.30 -6.86 7.95 -23.51 -0.19 -7.05 16 7 C 0.00 -0.12 5.75 -38.31 -0.22 -0.34 16 8 C -0.06 -1.38 6.23 -39.42 -0.25 -1.62 16 9 Br -0.10 -1.93 33.16 -68.01 -2.26 -4.18 16 10 C -0.21 -4.53 9.78 -39.32 -0.38 -4.92 16 11 C -0.11 -2.37 9.97 -40.00 -0.40 -2.76 16 12 C -0.14 -3.39 8.60 -39.27 -0.34 -3.73 16 13 C 0.10 2.67 5.55 -106.69 -0.59 2.07 16 14 C -0.43 -11.24 8.68 -37.84 -0.33 -11.57 16 15 H 0.09 2.44 7.71 -52.48 -0.40 2.04 16 16 C 0.07 1.72 5.27 -17.33 -0.09 1.63 16 17 N -0.80 -19.81 10.85 55.55 0.60 -19.21 16 18 Si 0.91 18.62 29.57 -169.99 -5.03 13.60 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 O -0.36 -6.51 10.07 -40.08 -0.40 -6.92 16 23 C 0.03 0.33 10.35 101.05 1.05 1.38 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.71 6.59 -51.93 -0.34 0.37 16 27 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.13 3.22 6.25 -52.48 -0.33 2.89 16 34 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.04 0.44 6.07 -51.93 -0.32 0.13 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -26.93 329.35 -8.66 -35.58 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.13 Total: 3.77 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -1.22 Total: -20.55 kcal Atomic # 7 Polarization: -19.81 SS G_CDS: 0.60 Total: -19.21 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.59 Total: -13.97 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 35 Polarization: -1.93 SS G_CDS: -2.26 Total: -4.18 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.93 -8.66 -35.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418982412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.557 kcal (2) G-P(sol) polarization free energy of solvation -26.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds