Wall clock time and date at job start Tue Mar 31 2020 14:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46936 * 2 1 4 4 H 1.08996 * 109.47175 * 305.33735 * 3 2 1 5 5 C 1.53004 * 109.47102 * 185.34046 * 3 2 1 6 6 O 1.42895 * 109.47324 * 305.00373 * 5 3 2 7 7 C 1.35654 * 117.00441 * 180.02562 * 6 5 3 8 8 C 1.38534 * 120.26624 * 269.71833 * 7 6 5 9 9 Br 1.89101 * 119.98334 * 0.02562 * 8 7 6 10 10 C 1.38374 * 120.03509 * 179.78478 * 8 7 6 11 11 C 1.38821 * 120.57842 * 0.47138 * 10 8 7 12 12 C 1.36491 * 120.54664 * 359.78545 * 11 10 8 13 13 C 1.40732 * 119.94366 * 359.97438 * 12 11 10 14 14 C 1.41159 * 120.28198 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99843 * 209.94779 * 14 13 12 16 16 C 1.39933 * 120.00268 * 29.93747 * 14 13 12 17 17 N 1.30865 * 120.00031 * 9.33049 * 16 14 13 18 18 Si 1.86799 * 120.00017 * 189.32765 * 16 14 13 19 19 H 1.48501 * 109.47158 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47229 * 120.00211 * 18 16 14 21 21 H 1.48507 * 109.47138 * 240.00242 * 18 16 14 22 22 O 1.42902 * 109.47363 * 65.34260 * 3 2 1 23 23 C 1.42899 * 113.99863 * 258.28145 * 22 3 2 24 24 H 1.09002 * 109.46975 * 177.00271 * 1 2 3 25 25 H 1.09001 * 109.46927 * 57.00943 * 1 2 3 26 26 H 1.08994 * 109.47266 * 297.00454 * 1 2 3 27 27 H 1.09005 * 109.47029 * 119.99777 * 2 1 3 28 28 H 1.08995 * 109.47484 * 239.99927 * 2 1 3 29 29 H 1.09008 * 109.46753 * 64.99972 * 5 3 2 30 30 H 1.08995 * 109.47271 * 184.99747 * 5 3 2 31 31 H 1.07993 * 119.70944 * 180.23238 * 10 8 7 32 32 H 1.07999 * 119.72936 * 179.76486 * 11 10 8 33 33 H 1.08003 * 120.02283 * 179.97438 * 12 11 10 34 34 H 0.96992 * 119.99868 * 179.97438 * 17 16 14 35 35 H 1.09003 * 109.47035 * 294.57633 * 23 22 3 36 36 H 1.09000 * 109.47259 * 54.57452 * 23 22 3 37 37 H 1.08992 * 109.46978 * 174.58120 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6007 1.9832 -0.8383 5 6 3.5641 1.4447 -0.1343 6 8 4.1344 0.6387 0.8987 7 6 5.4867 0.5345 0.9228 8 6 6.1214 -0.4808 0.2260 9 35 5.1017 -1.7279 -0.7644 10 6 7.5014 -0.5799 0.2504 11 6 8.2618 0.3260 0.9772 12 6 7.6608 1.3323 1.6766 13 6 6.2591 1.4572 1.6634 14 6 5.6301 2.4949 2.3846 15 1 4.6373 2.3498 2.7845 16 6 6.2928 3.7115 2.5816 17 7 7.4117 3.9571 1.9488 18 14 5.5804 4.9850 3.7477 19 1 4.3179 4.4678 4.3343 20 1 6.5541 5.2607 4.8346 21 1 5.3029 6.2389 3.0019 22 8 1.6688 2.0790 1.2244 23 6 0.5407 2.9485 1.1088 24 1 -0.3633 -1.0263 -0.0537 25 1 -0.3633 0.5596 -0.8620 26 1 -0.3633 0.4666 0.9156 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8437 1.0399 -1.1070 30 1 3.9352 2.4656 -0.0453 31 1 7.9909 -1.3712 -0.2978 32 1 9.3377 0.2336 0.9897 33 1 8.2606 2.0322 2.2395 34 1 7.8708 4.8005 2.0851 35 1 0.7953 3.7904 0.4651 36 1 -0.2971 2.4012 0.6767 37 1 0.2634 3.3171 2.0963 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418982412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:15 Heat of formation + Delta-G solvation = -86.480250 kcal Electronic energy + Delta-G solvation = -20742.873756 eV Core-core repulsion = 17530.877017 eV Total energy + Delta-G solvation = -3211.996739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45289 -39.32672 -37.52858 -35.66892 -34.19234 -32.65237 -31.44020 -30.34691 -29.15104 -27.32249 -26.98393 -24.37206 -22.85766 -22.61770 -21.73112 -19.21517 -18.48306 -17.39864 -17.26074 -16.69221 -16.38579 -16.08843 -15.90573 -15.17290 -14.78016 -14.46292 -14.40708 -14.25526 -13.81143 -13.36103 -13.29996 -13.16726 -12.93419 -12.83082 -12.50653 -12.35121 -12.16128 -11.97041 -11.83235 -11.64671 -11.59079 -11.47045 -11.07153 -10.92748 -10.39066 -10.32260 -9.32321 -9.17245 -8.64917 -6.39397 0.66609 0.78510 0.95170 1.36395 1.44285 1.51471 2.20293 2.61661 2.92433 3.06828 3.63118 3.86495 4.02894 4.21129 4.40630 4.47305 4.48919 4.55100 4.58922 4.65334 4.75511 4.80280 4.85610 4.96285 4.99542 5.05550 5.14159 5.22565 5.30038 5.33001 5.48482 5.60424 5.90612 5.99102 6.15572 6.38826 6.48189 6.75008 6.84741 7.18177 8.29448 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.007601 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.987536 B = 3682.814308 C = 6293.568582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.100 3.900 4 H 0.095 0.905 5 C 0.065 3.935 6 O -0.310 6.310 7 C -0.017 4.017 8 C -0.078 4.078 9 Br -0.064 7.064 10 C -0.200 4.200 11 C -0.105 4.105 12 C -0.156 4.156 13 C 0.071 3.929 14 C -0.462 4.462 15 H 0.069 0.931 16 C 0.037 3.963 17 N -0.824 5.824 18 Si 0.977 3.023 19 H -0.265 1.265 20 H -0.260 1.260 21 H -0.264 1.264 22 O -0.400 6.400 23 C 0.019 3.981 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.026 0.974 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.290 0.710 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 -3.708 -5.559 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.043 3.957 4 H 0.113 0.887 5 C -0.010 4.010 6 O -0.227 6.227 7 C -0.064 4.064 8 C -0.157 4.157 9 Br 0.021 6.979 10 C -0.221 4.221 11 C -0.124 4.124 12 C -0.176 4.176 13 C 0.067 3.933 14 C -0.491 4.491 15 H 0.088 0.912 16 C -0.177 4.177 17 N -0.451 5.451 18 Si 0.798 3.202 19 H -0.189 1.189 20 H -0.184 1.184 21 H -0.189 1.189 22 O -0.319 6.319 23 C -0.077 4.077 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.860 -4.101 -5.674 11.292 hybrid contribution 0.334 1.158 0.338 1.252 sum -8.526 -2.944 -5.336 10.480 Atomic orbital electron populations 1.21803 0.94020 1.02503 1.01999 1.21775 0.97123 0.95428 1.02417 1.22291 0.91311 0.94595 0.87531 0.88713 1.22830 0.93570 0.94043 0.90571 1.85971 1.16246 1.68651 1.51819 1.18594 0.83829 0.99886 1.04050 1.22051 0.94794 0.97254 1.01618 1.96392 1.73009 1.56709 1.71826 1.20588 0.90780 1.03348 1.07349 1.20777 0.99479 0.94720 0.97420 1.21175 0.94682 0.98936 1.02800 1.18188 0.92535 0.91572 0.90974 1.19577 1.02307 0.97591 1.29663 0.91250 1.26652 0.94435 1.00856 0.95805 1.69819 1.15425 1.25131 1.34707 0.85219 0.79354 0.77232 0.78384 1.18873 1.18432 1.18912 1.88077 1.49530 1.61855 1.32480 1.23086 0.88401 0.93067 1.03181 0.91744 0.91440 0.92734 0.92896 0.90881 0.92525 0.95527 0.85326 0.85373 0.86755 0.89956 0.93777 0.91775 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.84 71.98 0.64 -2.56 16 2 C -0.13 -3.79 5.35 30.59 0.16 -3.63 16 3 C 0.10 3.25 2.67 30.60 0.08 3.33 16 4 H 0.10 2.46 7.69 -2.39 -0.02 2.44 16 5 C 0.07 2.64 5.93 71.98 0.43 3.07 16 6 O -0.31 -14.65 7.95 -85.06 -0.68 -15.33 16 7 C -0.02 -0.83 5.75 23.09 0.13 -0.70 16 8 C -0.08 -3.49 6.23 22.37 0.14 -3.35 16 9 Br -0.06 -2.33 33.16 -20.37 -0.68 -3.00 16 10 C -0.20 -8.47 9.78 22.44 0.22 -8.25 16 11 C -0.10 -4.62 9.97 22.00 0.22 -4.40 16 12 C -0.16 -7.94 8.60 22.47 0.19 -7.75 16 13 C 0.07 3.84 5.55 -21.20 -0.12 3.72 16 14 C -0.46 -25.23 8.68 23.40 0.20 -25.03 16 15 H 0.07 3.96 7.71 -2.91 -0.02 3.93 16 16 C 0.04 1.86 5.27 85.25 0.45 2.31 16 17 N -0.82 -41.95 10.85 21.83 0.24 -41.72 16 18 Si 0.98 39.02 29.57 68.60 2.03 41.05 16 19 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 22 O -0.40 -14.32 10.07 -144.35 -1.45 -15.78 16 23 C 0.02 0.47 10.35 113.37 1.17 1.64 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.23 6.59 -2.39 -0.02 1.21 16 27 H 0.05 1.87 7.74 -2.38 -0.02 1.85 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 32 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 33 H 0.11 6.01 6.25 -2.91 -0.02 5.99 16 34 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.27 6.07 -2.39 -0.01 1.26 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -59.97 329.35 4.44 -55.52 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 1.06 Total: 20.86 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 3.92 Total: -41.61 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.24 Total: -41.72 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -2.13 Total: -31.11 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 35 Polarization: -2.33 SS G_CDS: -0.68 Total: -3.00 kcal Total: -59.97 4.44 -55.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418982412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.955 kcal (2) G-P(sol) polarization free energy of solvation -59.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds