Wall clock time and date at job start Tue Mar 31 2020 14:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47100 * 2 1 4 4 H 1.09000 * 109.47038 * 54.28144 * 3 2 1 5 5 C 1.53002 * 109.47120 * 174.28481 * 3 2 1 6 6 O 1.42906 * 109.47045 * 55.00044 * 5 3 2 7 7 C 1.35659 * 116.99835 * 180.02562 * 6 5 3 8 8 C 1.38524 * 120.26759 * 90.00093 * 7 6 5 9 9 Br 1.89099 * 119.98557 * 0.02562 * 8 7 6 10 10 C 1.38368 * 120.03410 * 179.74252 * 8 7 6 11 11 C 1.38821 * 120.58161 * 0.23686 * 10 8 7 12 12 C 1.36478 * 120.54531 * 359.97438 * 11 10 8 13 13 C 1.40745 * 119.94586 * 0.02663 * 12 11 10 14 14 C 1.41160 * 120.28469 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00047 * 154.39597 * 14 13 12 16 16 C 1.39939 * 119.99818 * 334.39679 * 14 13 12 17 17 N 1.30857 * 120.00151 * 343.57686 * 16 14 13 18 18 Si 1.86803 * 119.99785 * 163.57692 * 16 14 13 19 19 H 1.48500 * 109.47319 * 94.96376 * 18 16 14 20 20 H 1.48493 * 109.47034 * 214.96624 * 18 16 14 21 21 H 1.48507 * 109.46968 * 334.96385 * 18 16 14 22 22 O 1.42908 * 109.47391 * 294.28583 * 3 2 1 23 23 C 1.42889 * 113.99935 * 151.98528 * 22 3 2 24 24 H 1.09002 * 109.47556 * 185.22162 * 1 2 3 25 25 H 1.09003 * 109.46904 * 305.21986 * 1 2 3 26 26 H 1.08999 * 109.47561 * 65.21802 * 1 2 3 27 27 H 1.08995 * 109.46525 * 240.00327 * 2 1 3 28 28 H 1.08992 * 109.47023 * 120.00205 * 2 1 3 29 29 H 1.08996 * 109.46892 * 295.00301 * 5 3 2 30 30 H 1.08993 * 109.47031 * 174.99990 * 5 3 2 31 31 H 1.07999 * 119.71177 * 180.25140 * 10 8 7 32 32 H 1.08003 * 119.72579 * 180.02562 * 11 10 8 33 33 H 1.08001 * 120.02733 * 180.02562 * 12 11 10 34 34 H 0.96998 * 119.99903 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47505 * 64.39687 * 23 22 3 36 36 H 1.09007 * 109.46925 * 184.39261 * 23 22 3 37 37 H 1.08999 * 109.47539 * 304.39494 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5955 1.9850 0.8344 5 6 3.5633 1.4449 0.1437 6 8 4.1399 0.6366 -0.8842 7 6 5.4923 0.5316 -0.8991 8 6 6.1220 -0.4793 -0.1916 9 35 5.0954 -1.7202 0.7995 10 6 7.5014 -0.5852 -0.2144 11 6 8.2672 0.3183 -0.9386 12 6 7.6718 1.3259 -1.6407 13 6 6.2703 1.4547 -1.6331 14 6 5.6470 2.4939 -2.3571 15 1 4.6296 2.3780 -2.7004 16 6 6.3474 3.6742 -2.6300 17 7 7.4362 3.9583 -1.9622 18 14 5.7279 4.8444 -3.9478 19 1 4.8954 5.9015 -3.3196 20 1 6.8845 5.4699 -4.6377 21 1 4.9113 4.0918 -4.9338 22 8 1.6764 2.0764 -1.2281 23 6 1.5127 3.4921 -1.1252 24 1 -0.3634 -1.0234 0.0935 25 1 -0.3633 0.5927 0.8396 26 1 -0.3634 0.4307 -0.9330 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8368 1.0422 1.1189 30 1 3.9349 2.4656 0.0547 31 1 7.9866 -1.3778 0.3357 32 1 9.3429 0.2225 -0.9472 33 1 8.2756 2.0240 -2.2015 34 1 7.9215 4.7766 -2.1511 35 1 2.4683 3.9509 -0.8712 36 1 1.1618 3.8875 -2.0784 37 1 0.7832 3.7180 -0.3474 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418982413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:19 Heat of formation + Delta-G solvation = -75.260577 kcal Electronic energy + Delta-G solvation = -20817.235349 eV Core-core repulsion = 17605.725131 eV Total energy + Delta-G solvation = -3211.510218 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.80675 -37.76899 -35.76586 -33.90478 -33.18679 -30.91781 -29.67982 -28.59850 -27.38566 -26.22267 -25.29584 -23.04135 -21.06036 -20.97006 -20.20949 -17.39553 -16.85120 -15.96159 -15.57321 -15.22670 -14.84661 -14.47192 -14.26292 -13.76823 -13.35044 -13.11290 -12.74166 -12.72252 -12.44753 -11.99084 -11.67130 -11.55218 -11.27752 -11.20567 -11.11728 -10.93987 -10.73511 -10.65056 -10.31051 -10.13948 -9.91272 -9.80530 -9.39499 -9.23874 -9.03184 -8.64767 -7.55009 -7.39963 -6.92579 -4.49221 2.47824 2.56033 2.69047 2.99624 3.02750 3.10586 3.83028 4.14212 4.38881 4.75766 5.13182 5.31982 5.41242 5.53035 5.55928 5.71481 5.79003 5.88771 5.95917 6.04740 6.12587 6.19302 6.21120 6.40396 6.43569 6.47763 6.69769 6.80341 6.83933 7.04232 7.07466 7.40361 7.62078 7.71804 7.83526 7.98368 8.31079 8.58847 8.67256 8.98439 9.99804 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010600 B = 0.007435 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.937235 B = 3764.928030 C = 6186.067746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.098 3.902 4 H 0.063 0.937 5 C 0.043 3.957 6 O -0.297 6.297 7 C -0.010 4.010 8 C -0.057 4.057 9 Br -0.102 7.102 10 C -0.212 4.212 11 C -0.102 4.102 12 C -0.144 4.144 13 C 0.104 3.896 14 C -0.433 4.433 15 H 0.091 0.909 16 C 0.073 3.927 17 N -0.789 5.789 18 Si 0.909 3.091 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.256 1.256 22 O -0.368 6.368 23 C 0.030 3.970 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.283 0.717 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 -2.688 4.378 8.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.040 3.960 4 H 0.081 0.919 5 C -0.033 4.033 6 O -0.214 6.214 7 C -0.057 4.057 8 C -0.136 4.136 9 Br -0.017 7.017 10 C -0.234 4.234 11 C -0.122 4.122 12 C -0.164 4.164 13 C 0.100 3.900 14 C -0.461 4.461 15 H 0.110 0.890 16 C -0.145 4.145 17 N -0.414 5.414 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.180 1.180 22 O -0.287 6.287 23 C -0.067 4.067 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.049 -3.141 4.479 8.923 hybrid contribution 0.400 1.293 -0.214 1.370 sum -6.649 -1.848 4.264 8.113 Atomic orbital electron populations 1.21748 0.96243 1.00918 1.01619 1.21477 0.95059 0.94917 1.03721 1.22248 0.92624 0.94408 0.86703 0.91920 1.23066 0.92981 0.95839 0.91384 1.86038 1.16739 1.68081 1.50500 1.18311 0.83172 0.99793 1.04468 1.21808 0.93847 0.96818 1.01100 1.96398 1.73326 1.58970 1.73008 1.20182 0.90924 1.03524 1.08728 1.20432 0.97750 0.95606 0.98394 1.21131 0.94958 0.98311 1.01980 1.17804 0.91539 0.90786 0.89920 1.19620 1.00793 0.97814 1.27911 0.89048 1.26011 0.94072 0.98933 0.95529 1.69820 1.14571 1.23592 1.33373 0.86266 0.79480 0.79768 0.81222 1.19442 1.19934 1.17971 1.87990 1.89642 1.19078 1.31955 1.22752 0.99806 0.82577 1.01553 0.93115 0.93616 0.92292 0.89832 0.91023 0.93667 0.93106 0.88148 0.88415 0.85712 0.90587 0.93740 0.90111 0.94893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.76 37.16 0.36 -1.51 16 2 C -0.11 -1.75 5.34 -26.73 -0.14 -1.90 16 3 C 0.10 1.62 2.50 -26.73 -0.07 1.55 16 4 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 5 C 0.04 0.85 5.87 37.16 0.22 1.07 16 6 O -0.30 -6.79 7.90 -23.52 -0.19 -6.97 16 7 C -0.01 -0.25 5.75 -38.32 -0.22 -0.47 16 8 C -0.06 -1.29 6.23 -39.43 -0.25 -1.53 16 9 Br -0.10 -1.92 33.16 -68.01 -2.26 -4.18 16 10 C -0.21 -4.67 9.78 -39.32 -0.38 -5.05 16 11 C -0.10 -2.29 9.97 -40.00 -0.40 -2.69 16 12 C -0.14 -3.56 8.63 -39.27 -0.34 -3.90 16 13 C 0.10 2.67 5.58 -106.68 -0.59 2.08 16 14 C -0.43 -11.06 8.72 -37.84 -0.33 -11.39 16 15 H 0.09 2.39 7.66 -52.49 -0.40 1.99 16 16 C 0.07 1.75 5.16 -17.33 -0.09 1.66 16 17 N -0.79 -19.20 10.95 55.55 0.61 -18.59 16 18 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 O -0.37 -6.57 9.98 -40.07 -0.40 -6.97 16 23 C 0.03 0.44 10.85 101.05 1.10 1.54 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.78 7.98 -51.93 -0.41 0.36 16 27 H 0.08 1.48 7.75 -51.93 -0.40 1.07 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 1.08 7.69 -51.93 -0.40 0.68 16 31 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 33 H 0.13 3.14 6.18 -52.49 -0.32 2.81 16 34 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 35 H 0.04 0.70 7.71 -51.93 -0.40 0.30 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.03 0.40 7.98 -51.93 -0.41 -0.02 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -26.44 332.84 -8.64 -35.08 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.25 Total: 4.15 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -1.13 Total: -20.56 kcal Atomic # 7 Polarization: -19.20 SS G_CDS: 0.61 Total: -18.59 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.59 Total: -13.94 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Atomic # 35 Polarization: -1.92 SS G_CDS: -2.26 Total: -4.18 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.44 -8.64 -35.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418982413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.181 kcal (2) G-P(sol) polarization free energy of solvation -26.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds