Wall clock time and date at job start Tue Mar 31 2020 14:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47100 * 2 1 4 4 H 1.09000 * 109.47038 * 54.28144 * 3 2 1 5 5 C 1.53002 * 109.47120 * 174.28481 * 3 2 1 6 6 O 1.42906 * 109.47045 * 55.00044 * 5 3 2 7 7 C 1.35659 * 116.99835 * 180.02562 * 6 5 3 8 8 C 1.38524 * 120.26759 * 90.00093 * 7 6 5 9 9 Br 1.89099 * 119.98557 * 0.02562 * 8 7 6 10 10 C 1.38368 * 120.03410 * 179.74252 * 8 7 6 11 11 C 1.38821 * 120.58161 * 0.23686 * 10 8 7 12 12 C 1.36478 * 120.54531 * 359.97438 * 11 10 8 13 13 C 1.40745 * 119.94586 * 0.02663 * 12 11 10 14 14 C 1.41160 * 120.28469 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00047 * 154.39597 * 14 13 12 16 16 C 1.39939 * 119.99818 * 334.39679 * 14 13 12 17 17 N 1.30857 * 120.00151 * 343.57686 * 16 14 13 18 18 Si 1.86803 * 119.99785 * 163.57692 * 16 14 13 19 19 H 1.48500 * 109.47319 * 94.96376 * 18 16 14 20 20 H 1.48493 * 109.47034 * 214.96624 * 18 16 14 21 21 H 1.48507 * 109.46968 * 334.96385 * 18 16 14 22 22 O 1.42908 * 109.47391 * 294.28583 * 3 2 1 23 23 C 1.42889 * 113.99935 * 151.98528 * 22 3 2 24 24 H 1.09002 * 109.47556 * 185.22162 * 1 2 3 25 25 H 1.09003 * 109.46904 * 305.21986 * 1 2 3 26 26 H 1.08999 * 109.47561 * 65.21802 * 1 2 3 27 27 H 1.08995 * 109.46525 * 240.00327 * 2 1 3 28 28 H 1.08992 * 109.47023 * 120.00205 * 2 1 3 29 29 H 1.08996 * 109.46892 * 295.00301 * 5 3 2 30 30 H 1.08993 * 109.47031 * 174.99990 * 5 3 2 31 31 H 1.07999 * 119.71177 * 180.25140 * 10 8 7 32 32 H 1.08003 * 119.72579 * 180.02562 * 11 10 8 33 33 H 1.08001 * 120.02733 * 180.02562 * 12 11 10 34 34 H 0.96998 * 119.99903 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47505 * 64.39687 * 23 22 3 36 36 H 1.09007 * 109.46925 * 184.39261 * 23 22 3 37 37 H 1.08999 * 109.47539 * 304.39494 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5955 1.9850 0.8344 5 6 3.5633 1.4449 0.1437 6 8 4.1399 0.6366 -0.8842 7 6 5.4923 0.5316 -0.8991 8 6 6.1220 -0.4793 -0.1916 9 35 5.0954 -1.7202 0.7995 10 6 7.5014 -0.5852 -0.2144 11 6 8.2672 0.3183 -0.9386 12 6 7.6718 1.3259 -1.6407 13 6 6.2703 1.4547 -1.6331 14 6 5.6470 2.4939 -2.3571 15 1 4.6296 2.3780 -2.7004 16 6 6.3474 3.6742 -2.6300 17 7 7.4362 3.9583 -1.9622 18 14 5.7279 4.8444 -3.9478 19 1 4.8954 5.9015 -3.3196 20 1 6.8845 5.4699 -4.6377 21 1 4.9113 4.0918 -4.9338 22 8 1.6764 2.0764 -1.2281 23 6 1.5127 3.4921 -1.1252 24 1 -0.3634 -1.0234 0.0935 25 1 -0.3633 0.5927 0.8396 26 1 -0.3634 0.4307 -0.9330 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8368 1.0422 1.1189 30 1 3.9349 2.4656 0.0547 31 1 7.9866 -1.3778 0.3357 32 1 9.3429 0.2225 -0.9472 33 1 8.2756 2.0240 -2.2015 34 1 7.9215 4.7766 -2.1511 35 1 2.4683 3.9509 -0.8712 36 1 1.1618 3.8875 -2.0784 37 1 0.7832 3.7180 -0.3474 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418982413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:18 Heat of formation + Delta-G solvation = -87.922541 kcal Electronic energy + Delta-G solvation = -20817.784413 eV Core-core repulsion = 17605.725131 eV Total energy + Delta-G solvation = -3212.059282 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46704 -39.25701 -37.45871 -35.71624 -34.42019 -32.66221 -31.39905 -30.12998 -29.03949 -27.51672 -27.09217 -24.33802 -22.88119 -22.60711 -21.66903 -19.22363 -18.47463 -17.46747 -17.27713 -16.68980 -16.36903 -16.05907 -15.86521 -15.14303 -14.80447 -14.51307 -14.40034 -14.35546 -13.88053 -13.37478 -13.33985 -13.18040 -12.93026 -12.78856 -12.49372 -12.27606 -12.15975 -11.92867 -11.83958 -11.70571 -11.55616 -11.48839 -11.07006 -10.93431 -10.41261 -10.38938 -9.39211 -9.17906 -8.71740 -6.38963 0.66763 0.78341 0.95402 1.35076 1.43000 1.50720 2.16941 2.57589 2.85971 3.13833 3.63478 3.86973 4.05132 4.20927 4.40621 4.45552 4.51464 4.52568 4.57700 4.66257 4.74102 4.78667 4.88832 4.95709 5.01708 5.07734 5.15785 5.20059 5.28721 5.34273 5.50955 5.60515 5.88074 5.98089 6.13987 6.34916 6.45624 6.72898 6.80892 7.18363 8.22981 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010600 B = 0.007435 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.937235 B = 3764.928030 C = 6186.067746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.100 3.900 4 H 0.094 0.906 5 C 0.045 3.955 6 O -0.308 6.308 7 C -0.024 4.024 8 C -0.074 4.074 9 Br -0.065 7.065 10 C -0.208 4.208 11 C -0.102 4.102 12 C -0.165 4.165 13 C 0.073 3.927 14 C -0.461 4.461 15 H 0.072 0.928 16 C 0.041 3.959 17 N -0.814 5.814 18 Si 0.972 3.028 19 H -0.259 1.259 20 H -0.261 1.261 21 H -0.263 1.263 22 O -0.392 6.392 23 C 0.026 3.974 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.025 0.975 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.292 0.708 35 H 0.025 0.975 36 H 0.092 0.908 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.607 -2.909 5.205 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C 0.042 3.958 4 H 0.112 0.888 5 C -0.030 4.030 6 O -0.225 6.225 7 C -0.071 4.071 8 C -0.153 4.153 9 Br 0.020 6.980 10 C -0.229 4.229 11 C -0.121 4.121 12 C -0.185 4.185 13 C 0.069 3.931 14 C -0.490 4.490 15 H 0.090 0.910 16 C -0.176 4.176 17 N -0.440 5.440 18 Si 0.793 3.207 19 H -0.184 1.184 20 H -0.185 1.185 21 H -0.187 1.187 22 O -0.311 6.311 23 C -0.071 4.071 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.111 0.889 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.969 -3.370 5.322 10.158 hybrid contribution 0.675 1.255 -0.365 1.471 sum -7.294 -2.116 4.957 9.069 Atomic orbital electron populations 1.21682 0.93833 1.02210 1.02018 1.21435 0.97119 0.93686 1.02550 1.22367 0.90260 0.95676 0.87453 0.88845 1.23202 0.95163 0.93902 0.90772 1.85991 1.16139 1.68524 1.51839 1.18540 0.83808 1.00177 1.04553 1.22049 0.94737 0.97262 1.01257 1.96389 1.72637 1.57154 1.71807 1.20544 0.90808 1.03603 1.07948 1.20746 0.99382 0.94643 0.97324 1.21122 0.94660 0.99370 1.03305 1.18169 0.92484 0.91683 0.90780 1.19580 1.00380 0.99185 1.29823 0.90969 1.26681 0.94116 0.99795 0.96962 1.69838 1.15401 1.24464 1.34256 0.85327 0.79259 0.77744 0.78391 1.18386 1.18525 1.18716 1.87963 1.89531 1.20690 1.32950 1.22907 0.99731 0.81042 1.03394 0.91696 0.91708 0.93072 0.92753 0.90391 0.93178 0.95667 0.85512 0.85505 0.86875 0.89717 0.95633 0.88947 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.76 71.98 0.70 -2.52 16 2 C -0.11 -3.26 5.34 30.59 0.16 -3.10 16 3 C 0.10 3.23 2.50 30.59 0.08 3.31 16 4 H 0.09 2.43 7.75 -2.39 -0.02 2.42 16 5 C 0.05 1.81 5.87 71.98 0.42 2.23 16 6 O -0.31 -14.45 7.90 -85.12 -0.67 -15.12 16 7 C -0.02 -1.18 5.75 23.09 0.13 -1.05 16 8 C -0.07 -3.31 6.23 22.37 0.14 -3.17 16 9 Br -0.06 -2.36 33.16 -20.37 -0.68 -3.03 16 10 C -0.21 -8.89 9.78 22.44 0.22 -8.67 16 11 C -0.10 -4.50 9.97 22.00 0.22 -4.28 16 12 C -0.16 -8.34 8.63 22.47 0.19 -8.15 16 13 C 0.07 3.89 5.58 -21.20 -0.12 3.77 16 14 C -0.46 -24.64 8.72 23.40 0.20 -24.44 16 15 H 0.07 4.00 7.66 -2.91 -0.02 3.98 16 16 C 0.04 1.99 5.16 85.25 0.44 2.43 16 17 N -0.81 -40.55 10.95 21.83 0.24 -40.31 16 18 Si 0.97 37.59 29.59 68.60 2.03 39.62 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 20 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 22 O -0.39 -13.91 9.98 -144.35 -1.44 -15.35 16 23 C 0.03 0.73 10.85 113.37 1.23 1.96 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.26 7.98 -2.39 -0.02 1.24 16 27 H 0.05 1.92 7.75 -2.39 -0.02 1.90 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.02 1.12 7.69 -2.39 -0.02 1.10 16 31 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 32 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.11 5.89 6.18 -2.91 -0.02 5.87 16 34 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16 35 H 0.02 0.81 7.71 -2.39 -0.02 0.79 16 36 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.06 1.42 7.98 -2.39 -0.02 1.40 16 Total: -1.00 -58.38 332.84 4.56 -53.82 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 1.06 Total: 22.05 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 4.03 Total: -41.67 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.24 Total: -40.31 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -2.11 Total: -30.47 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Atomic # 35 Polarization: -2.36 SS G_CDS: -0.68 Total: -3.03 kcal Total: -58.38 4.56 -53.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418982413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.104 kcal (2) G-P(sol) polarization free energy of solvation -58.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds