Wall clock time and date at job start Tue Mar 31 2020 15:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47530 * 2 1 4 4 O 1.42904 * 109.47349 * 240.00258 * 2 1 3 5 5 C 1.53004 * 109.47397 * 120.00064 * 2 1 3 6 6 C 1.53001 * 109.47181 * 184.99700 * 5 2 1 7 7 C 1.53001 * 109.46696 * 179.97438 * 6 5 2 8 8 O 1.42902 * 109.46785 * 180.02562 * 7 6 5 9 9 C 1.35655 * 116.99949 * 180.02562 * 8 7 6 10 10 C 1.38532 * 120.26827 * 269.97769 * 9 8 7 11 11 Br 1.89097 * 119.98371 * 0.04685 * 10 9 8 12 12 C 1.38372 * 120.03412 * 180.02562 * 10 9 8 13 13 C 1.38826 * 120.58178 * 0.03029 * 12 10 9 14 14 C 1.36485 * 120.54330 * 359.65880 * 13 12 10 15 15 C 1.40733 * 119.94508 * 0.61720 * 14 13 12 16 16 C 1.41158 * 120.28407 * 179.69184 * 15 14 13 17 17 H 1.08003 * 120.00006 * 149.99169 * 16 15 14 18 18 C 1.39934 * 119.99740 * 329.71721 * 16 15 14 19 19 N 1.30867 * 119.99976 * 161.88120 * 18 16 15 20 20 Si 1.86797 * 120.00225 * 341.88045 * 18 16 15 21 21 H 1.48502 * 109.47156 * 95.38568 * 20 18 16 22 22 H 1.48496 * 109.47404 * 215.39245 * 20 18 16 23 23 H 1.48505 * 109.47018 * 335.38997 * 20 18 16 24 24 H 1.09002 * 109.47011 * 59.99827 * 1 2 3 25 25 H 1.09003 * 109.47074 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46691 * 299.99761 * 1 2 3 27 27 H 0.96700 * 113.99986 * 59.99645 * 4 2 1 28 28 H 1.09007 * 109.46601 * 65.00024 * 5 2 1 29 29 H 1.08994 * 109.47058 * 305.00356 * 5 2 1 30 30 H 1.08994 * 109.46777 * 60.00660 * 6 5 2 31 31 H 1.09001 * 109.47339 * 300.00120 * 6 5 2 32 32 H 1.09007 * 109.46696 * 60.00563 * 7 6 5 33 33 H 1.08994 * 109.47448 * 300.00598 * 7 6 5 34 34 H 1.07999 * 119.71058 * 179.97438 * 12 10 9 35 35 H 1.07998 * 119.72502 * 179.97438 * 13 12 10 36 36 H 1.07999 * 120.01959 * 180.30838 * 14 13 12 37 37 H 0.97000 * 120.00094 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3136 7 6 4.0748 -1.3341 2.5632 8 8 5.4989 -1.2328 2.6236 9 6 6.1142 -1.8238 3.6784 10 6 6.3325 -1.1131 4.8473 11 35 5.7709 0.6878 4.9773 12 6 6.9610 -1.7206 5.9200 13 6 7.3786 -3.0420 5.8381 14 6 7.1699 -3.7661 4.7001 15 6 6.5381 -3.1689 3.5934 16 6 6.3245 -3.9093 2.4107 17 1 5.4772 -3.6857 1.7793 18 6 7.2136 -4.9290 2.0534 19 7 6.8520 -5.8374 1.1835 20 14 8.9167 -4.9937 2.8181 21 1 8.9009 -5.9122 3.9849 22 1 9.8922 -5.4869 1.8130 23 1 9.3109 -3.6333 3.2644 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7210 -0.2701 -1.9980 28 1 1.7517 -1.7716 1.2055 29 1 1.6054 -0.2618 2.1369 30 1 3.8532 0.4369 1.3573 31 1 3.9995 -1.0728 0.4258 32 1 3.7864 -2.3844 2.5199 33 1 3.6402 -0.8743 3.4507 34 1 7.1290 -1.1615 6.8286 35 1 7.8682 -3.5023 6.6836 36 1 7.4938 -4.7950 4.6474 37 1 7.4685 -6.5441 0.9356 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418984522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:02 Heat of formation + Delta-G solvation = -105.798945 kcal Electronic energy + Delta-G solvation = -19969.521410 eV Core-core repulsion = 16756.686949 eV Total energy + Delta-G solvation = -3212.834461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55222 -38.86845 -37.96639 -35.69404 -34.72574 -33.15289 -31.89662 -31.27078 -29.64988 -27.46282 -26.65954 -23.23728 -23.00180 -22.38971 -21.84083 -19.33090 -18.62009 -18.44914 -17.38363 -16.87186 -16.31008 -15.82151 -15.70801 -15.37011 -15.13222 -15.04018 -14.57929 -13.97332 -13.77541 -13.69753 -13.39064 -13.17310 -13.12279 -12.73093 -12.57611 -12.47705 -12.32312 -12.01008 -11.86452 -11.69848 -11.50092 -11.45511 -11.15949 -11.02972 -10.88210 -10.45349 -9.54828 -9.32469 -8.96503 -6.54651 0.41088 0.57929 0.83253 1.23807 1.38623 1.47374 2.08118 2.44040 2.86106 3.36533 3.42778 3.91779 3.98908 4.04872 4.23052 4.26262 4.43839 4.47179 4.49640 4.56421 4.62420 4.70641 4.79006 4.85747 4.95824 5.03747 5.04305 5.15516 5.24511 5.32818 5.35273 5.44834 5.62881 5.78182 5.98768 6.20388 6.43605 6.66455 6.96151 7.00742 8.11054 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009833 B = 0.005705 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.814511 B = 4906.683794 C = 7400.916053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 H 0.068 0.932 4 O -0.590 6.590 5 C -0.108 4.108 6 C -0.100 4.100 7 C 0.069 3.931 8 O -0.329 6.329 9 C -0.004 4.004 10 C -0.069 4.069 11 Br -0.057 7.057 12 C -0.198 4.198 13 C -0.072 4.072 14 C -0.227 4.227 15 C 0.059 3.941 16 C -0.456 4.456 17 H 0.055 0.945 18 C 0.048 3.952 19 N -0.838 5.838 20 Si 0.963 3.037 21 H -0.245 1.245 22 H -0.276 1.276 23 H -0.255 1.255 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.391 0.609 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.021 0.979 33 H 0.053 0.947 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 11.305 3.972 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.042 3.958 3 H 0.086 0.914 4 O -0.399 6.399 5 C -0.146 4.146 6 C -0.138 4.138 7 C -0.006 4.006 8 O -0.246 6.246 9 C -0.051 4.051 10 C -0.149 4.149 11 Br 0.028 6.972 12 C -0.219 4.219 13 C -0.091 4.091 14 C -0.247 4.247 15 C 0.055 3.945 16 C -0.484 4.484 17 H 0.073 0.927 18 C -0.168 4.168 19 N -0.463 5.463 20 Si 0.785 3.215 21 H -0.170 1.170 22 H -0.203 1.203 23 H -0.178 1.178 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.241 0.759 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.129 0.871 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.401 11.466 4.111 13.760 hybrid contribution 0.204 -0.692 -0.588 0.930 sum -6.197 10.774 3.524 12.919 Atomic orbital electron populations 1.22454 0.94695 1.02676 1.03795 1.21849 0.93828 0.95228 0.84915 0.91437 1.86590 1.77677 1.58488 1.17121 1.21566 0.93556 1.01430 0.98025 1.21334 0.96135 1.00636 0.95670 1.22688 0.80589 0.98397 0.98929 1.85924 1.19861 1.74617 1.44150 1.18714 1.06799 0.91138 0.88426 1.22189 1.05509 0.91025 0.96144 1.96448 1.89834 1.12440 1.98434 1.20706 1.07235 0.96017 0.97963 1.20811 0.97382 0.93514 0.97389 1.20964 1.09220 1.00062 0.94448 1.18127 0.92422 0.90328 0.93664 1.19252 1.10460 1.12636 1.06088 0.92654 1.26886 1.04010 0.91826 0.94076 1.69727 1.38478 1.10196 1.27889 0.85527 0.76571 0.80778 0.78593 1.16974 1.20254 1.17849 0.90636 0.92778 0.90349 0.75928 0.92622 0.88505 0.90620 0.93224 0.96080 0.92880 0.84138 0.83525 0.87128 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.53 71.98 0.69 -2.20 16 2 C 0.10 2.18 3.58 30.60 0.11 2.29 16 3 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 4 O -0.59 -15.03 12.86 -148.98 -1.92 -16.95 16 5 C -0.11 -2.91 4.92 30.60 0.15 -2.76 16 6 C -0.10 -3.43 5.48 30.59 0.17 -3.26 16 7 C 0.07 2.79 5.90 71.98 0.42 3.22 16 8 O -0.33 -15.67 8.76 -89.71 -0.79 -16.45 16 9 C 0.00 -0.19 5.75 23.09 0.13 -0.06 16 10 C -0.07 -2.89 6.23 22.37 0.14 -2.75 16 11 Br -0.06 -1.94 33.16 -20.37 -0.68 -2.62 16 12 C -0.20 -7.46 9.78 22.44 0.22 -7.24 16 13 C -0.07 -2.75 9.97 22.00 0.22 -2.53 16 14 C -0.23 -10.31 7.12 22.47 0.16 -10.15 16 15 C 0.06 3.02 5.10 -21.20 -0.11 2.91 16 16 C -0.46 -25.83 9.19 23.40 0.22 -25.62 16 17 H 0.06 3.46 7.23 -2.91 -0.02 3.44 16 18 C 0.05 2.56 5.40 85.25 0.46 3.02 16 19 N -0.84 -45.78 13.93 21.83 0.30 -45.47 16 20 Si 0.96 41.88 24.53 68.60 1.68 43.56 16 21 H -0.25 -9.65 6.71 99.48 0.67 -8.98 16 22 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.25 -11.47 6.87 99.48 0.68 -10.79 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.39 6.03 9.08 -74.06 -0.67 5.36 16 28 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 1.97 7.82 -2.39 -0.02 1.95 16 32 H 0.02 0.95 7.64 -2.38 -0.02 0.93 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.11 4.88 4.78 -2.91 -0.01 4.87 16 37 H 0.30 14.46 8.30 -92.71 -0.77 13.69 16 Total: -1.00 -64.22 327.99 1.93 -62.29 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.34 Total: 20.76 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 2.98 Total: -45.12 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.30 Total: -45.47 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -2.70 Total: -33.40 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.68 Total: 43.56 kcal Atomic # 35 Polarization: -1.94 SS G_CDS: -0.68 Total: -2.62 kcal Total: -64.22 1.93 -62.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418984522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.508 kcal (2) G-P(sol) polarization free energy of solvation -64.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds