Wall clock time and date at job start Tue Mar 31 2020 15:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47367 * 2 1 4 4 O 1.42905 * 109.47076 * 119.99499 * 2 1 3 5 5 C 1.53004 * 109.47386 * 239.99988 * 2 1 3 6 6 C 1.52998 * 109.47164 * 175.00317 * 5 2 1 7 7 C 1.52995 * 109.47008 * 179.97438 * 6 5 2 8 8 O 1.42898 * 109.47240 * 179.97438 * 7 6 5 9 9 C 1.35659 * 117.00472 * 179.97438 * 8 7 6 10 10 C 1.38536 * 120.26926 * 89.99547 * 9 8 7 11 11 Br 1.89097 * 119.98128 * 0.02562 * 10 9 8 12 12 C 1.38369 * 120.03394 * 179.97438 * 10 9 8 13 13 C 1.38814 * 120.58338 * 359.97438 * 12 10 9 14 14 C 1.36488 * 120.54493 * 0.02562 * 13 12 10 15 15 C 1.40734 * 119.94574 * 359.74106 * 14 13 12 16 16 C 1.41165 * 120.28734 * 180.27941 * 15 14 13 17 17 H 1.08002 * 119.99822 * 154.51896 * 16 15 14 18 18 C 1.39935 * 119.99470 * 334.51375 * 16 15 14 19 19 N 1.30861 * 120.00291 * 343.32502 * 18 16 15 20 20 Si 1.86804 * 119.99397 * 163.32268 * 18 16 15 21 21 H 1.48496 * 109.46798 * 60.00413 * 20 18 16 22 22 H 1.48502 * 109.46894 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47109 * 300.00100 * 20 18 16 24 24 H 1.08994 * 109.47499 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47482 * 300.00434 * 1 2 3 26 26 H 1.09008 * 109.46846 * 60.00310 * 1 2 3 27 27 H 0.96702 * 113.99333 * 60.00457 * 4 2 1 28 28 H 1.08993 * 109.47006 * 54.99824 * 5 2 1 29 29 H 1.08997 * 109.46541 * 294.99815 * 5 2 1 30 30 H 1.09005 * 109.47365 * 59.99430 * 6 5 2 31 31 H 1.09008 * 109.46892 * 299.99995 * 6 5 2 32 32 H 1.08997 * 109.47204 * 299.99364 * 7 6 5 33 33 H 1.08996 * 109.47441 * 59.99870 * 7 6 5 34 34 H 1.08006 * 119.70593 * 179.97438 * 12 10 9 35 35 H 1.08003 * 119.73023 * 180.02562 * 13 12 10 36 36 H 1.08001 * 120.02357 * 180.02562 * 14 13 12 37 37 H 0.97003 * 119.99910 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7213 -1.2493 6 6 3.5649 -0.6133 -1.3136 7 6 4.0749 -1.3351 -2.5625 8 8 5.4990 -1.2338 -2.6229 9 6 6.1145 -1.8257 -3.6771 10 6 6.3324 -1.1162 -4.8469 11 35 5.7718 0.6849 -4.9780 12 6 6.9611 -1.7246 -5.9189 13 6 7.3791 -3.0457 -5.8356 14 6 7.1765 -3.7668 -4.6947 15 6 6.5437 -3.1689 -3.5888 16 6 6.3358 -3.9063 -2.4032 17 1 6.2468 -3.3933 -1.4569 18 6 6.2448 -5.3017 -2.4540 19 7 6.0247 -5.9020 -3.5958 20 14 6.4379 -6.3077 -0.8918 21 1 5.3883 -5.9150 0.0825 22 1 6.3011 -7.7512 -1.2126 23 1 7.7781 -6.0566 -0.3038 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.7210 -1.5952 1.2330 28 1 1.6054 -0.2618 -2.1369 29 1 1.7517 -1.7715 -1.2055 30 1 3.9995 -1.0728 -0.4258 31 1 3.8532 0.4370 -1.3572 32 1 3.7867 -2.3853 -2.5183 33 1 3.6404 -0.8760 -3.4504 34 1 7.1279 -1.1667 -6.8285 35 1 7.8689 -3.5068 -6.6807 36 1 7.5056 -4.7939 -4.6389 37 1 5.9620 -6.8693 -3.6310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418984523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:05 Heat of formation + Delta-G solvation = -92.775528 kcal Electronic energy + Delta-G solvation = -19996.495080 eV Core-core repulsion = 16784.225357 eV Total energy + Delta-G solvation = -3212.269723 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.61608 -37.92160 -36.13712 -33.93542 -33.25389 -30.94186 -30.60599 -29.35083 -27.71442 -25.94615 -25.12124 -21.85098 -21.08107 -21.00916 -20.56388 -17.39908 -16.69228 -16.23296 -15.90467 -15.49559 -14.92151 -14.58983 -14.28665 -13.84207 -13.53554 -13.22272 -12.87951 -12.61433 -12.36200 -11.96599 -11.78878 -11.66691 -11.40962 -11.31411 -11.18889 -10.88593 -10.71776 -10.63931 -10.55683 -10.07202 -10.00763 -9.85506 -9.79449 -9.36894 -9.24019 -8.65928 -7.57559 -7.41558 -6.94195 -4.52398 2.46062 2.55548 2.68139 2.98391 3.01450 3.09146 3.81280 4.26655 4.38430 4.58481 4.92205 4.99935 5.13606 5.33449 5.45766 5.51985 5.72850 5.77259 5.86939 5.99611 6.09119 6.11556 6.14555 6.25636 6.41862 6.62043 6.66767 6.79462 6.82693 7.02474 7.05855 7.38832 7.64441 7.67861 7.80480 7.95625 8.26879 8.55366 8.64219 8.95616 9.98168 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.007947 B = 0.006588 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3522.444880 B = 4249.161766 C = 7411.731645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.102 3.898 3 H 0.097 0.903 4 O -0.563 6.563 5 C -0.148 4.148 6 C -0.110 4.110 7 C 0.067 3.933 8 O -0.314 6.314 9 C -0.008 4.008 10 C -0.057 4.057 11 Br -0.101 7.101 12 C -0.211 4.211 13 C -0.102 4.102 14 C -0.144 4.144 15 C 0.104 3.896 16 C -0.438 4.438 17 H 0.088 0.912 18 C 0.074 3.926 19 N -0.788 5.788 20 Si 0.912 3.088 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.261 1.261 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.374 0.626 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 6.119 1.544 9.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.043 3.957 3 H 0.115 0.885 4 O -0.368 6.368 5 C -0.186 4.186 6 C -0.147 4.147 7 C -0.009 4.009 8 O -0.231 6.231 9 C -0.055 4.055 10 C -0.136 4.136 11 Br -0.017 7.017 12 C -0.232 4.232 13 C -0.122 4.122 14 C -0.163 4.163 15 C 0.100 3.900 16 C -0.466 4.466 17 H 0.106 0.894 18 C -0.145 4.145 19 N -0.413 5.413 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.185 1.185 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.221 0.779 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.605 7.230 1.651 9.931 hybrid contribution -0.312 -1.612 0.120 1.646 sum -6.917 5.618 1.771 9.085 Atomic orbital electron populations 1.22514 0.96806 1.02459 1.02488 1.21919 0.92295 0.96841 0.84612 0.88492 1.86586 1.77345 1.29010 1.43892 1.22223 0.96606 1.01313 0.98434 1.21375 0.93676 1.01181 0.98495 1.22511 0.82545 0.99251 0.96548 1.85944 1.18071 1.75004 1.44036 1.18278 1.05801 0.93720 0.87736 1.21805 1.06340 0.88534 0.96944 1.96405 1.90406 1.16222 1.98633 1.20194 1.09857 0.95968 0.97199 1.20441 1.00467 0.93467 0.97816 1.21126 1.01018 1.00639 0.93535 1.17780 0.89499 0.89175 0.93563 1.19527 1.41456 0.90662 0.94968 0.89429 1.26001 0.91958 0.98617 0.97911 1.69809 1.32729 1.11765 1.26949 0.86282 0.80465 0.78002 0.81640 1.18729 1.20233 1.18528 0.92355 0.92050 0.91628 0.77918 0.91086 0.91458 0.90709 0.91705 0.93366 0.94510 0.88080 0.88330 0.85656 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 9.53 37.16 0.35 -1.30 16 2 C 0.10 1.14 3.59 -26.73 -0.10 1.04 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 4 O -0.56 -6.98 12.88 -35.23 -0.45 -7.43 16 5 C -0.15 -1.85 4.89 -26.73 -0.13 -1.98 16 6 C -0.11 -1.76 5.48 -26.73 -0.15 -1.90 16 7 C 0.07 1.31 6.06 37.16 0.23 1.53 16 8 O -0.31 -7.27 8.70 -18.68 -0.16 -7.43 16 9 C -0.01 -0.21 5.75 -38.31 -0.22 -0.43 16 10 C -0.06 -1.31 6.23 -39.42 -0.25 -1.56 16 11 Br -0.10 -1.96 33.16 -68.01 -2.26 -4.22 16 12 C -0.21 -4.65 9.78 -39.32 -0.38 -5.03 16 13 C -0.10 -2.29 9.97 -40.00 -0.40 -2.69 16 14 C -0.14 -3.54 8.63 -39.27 -0.34 -3.88 16 15 C 0.10 2.68 5.58 -106.68 -0.59 2.08 16 16 C -0.44 -11.12 8.71 -37.84 -0.33 -11.45 16 17 H 0.09 2.23 7.66 -52.49 -0.40 1.83 16 18 C 0.07 1.76 5.16 -17.33 -0.09 1.67 16 19 N -0.79 -19.08 10.95 55.55 0.61 -18.47 16 20 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.37 3.45 9.05 45.56 0.41 3.86 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.28 7.82 -51.93 -0.41 0.87 16 31 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.00 8.06 -52.48 -0.42 1.58 16 35 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 36 H 0.13 3.13 6.19 -52.49 -0.32 2.81 16 37 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -27.06 334.37 -9.16 -36.22 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.51 Total: 7.31 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -2.40 Total: -23.88 kcal Atomic # 7 Polarization: -19.08 SS G_CDS: 0.61 Total: -18.47 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.62 Total: -14.86 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 35 Polarization: -1.96 SS G_CDS: -2.26 Total: -4.22 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.06 -9.16 -36.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418984523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.560 kcal (2) G-P(sol) polarization free energy of solvation -27.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds