Wall clock time and date at job start Tue Mar 31 2020 15:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47367 * 2 1 4 4 O 1.42905 * 109.47076 * 119.99499 * 2 1 3 5 5 C 1.53004 * 109.47386 * 239.99988 * 2 1 3 6 6 C 1.52998 * 109.47164 * 175.00317 * 5 2 1 7 7 C 1.52995 * 109.47008 * 179.97438 * 6 5 2 8 8 O 1.42898 * 109.47240 * 179.97438 * 7 6 5 9 9 C 1.35659 * 117.00472 * 179.97438 * 8 7 6 10 10 C 1.38536 * 120.26926 * 89.99547 * 9 8 7 11 11 Br 1.89097 * 119.98128 * 0.02562 * 10 9 8 12 12 C 1.38369 * 120.03394 * 179.97438 * 10 9 8 13 13 C 1.38814 * 120.58338 * 359.97438 * 12 10 9 14 14 C 1.36488 * 120.54493 * 0.02562 * 13 12 10 15 15 C 1.40734 * 119.94574 * 359.74106 * 14 13 12 16 16 C 1.41165 * 120.28734 * 180.27941 * 15 14 13 17 17 H 1.08002 * 119.99822 * 154.51896 * 16 15 14 18 18 C 1.39935 * 119.99470 * 334.51375 * 16 15 14 19 19 N 1.30861 * 120.00291 * 343.32502 * 18 16 15 20 20 Si 1.86804 * 119.99397 * 163.32268 * 18 16 15 21 21 H 1.48496 * 109.46798 * 60.00413 * 20 18 16 22 22 H 1.48502 * 109.46894 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47109 * 300.00100 * 20 18 16 24 24 H 1.08994 * 109.47499 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47482 * 300.00434 * 1 2 3 26 26 H 1.09008 * 109.46846 * 60.00310 * 1 2 3 27 27 H 0.96702 * 113.99333 * 60.00457 * 4 2 1 28 28 H 1.08993 * 109.47006 * 54.99824 * 5 2 1 29 29 H 1.08997 * 109.46541 * 294.99815 * 5 2 1 30 30 H 1.09005 * 109.47365 * 59.99430 * 6 5 2 31 31 H 1.09008 * 109.46892 * 299.99995 * 6 5 2 32 32 H 1.08997 * 109.47204 * 299.99364 * 7 6 5 33 33 H 1.08996 * 109.47441 * 59.99870 * 7 6 5 34 34 H 1.08006 * 119.70593 * 179.97438 * 12 10 9 35 35 H 1.08003 * 119.73023 * 180.02562 * 13 12 10 36 36 H 1.08001 * 120.02357 * 180.02562 * 14 13 12 37 37 H 0.97003 * 119.99910 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7213 -1.2493 6 6 3.5649 -0.6133 -1.3136 7 6 4.0749 -1.3351 -2.5625 8 8 5.4990 -1.2338 -2.6229 9 6 6.1145 -1.8257 -3.6771 10 6 6.3324 -1.1162 -4.8469 11 35 5.7718 0.6849 -4.9780 12 6 6.9611 -1.7246 -5.9189 13 6 7.3791 -3.0457 -5.8356 14 6 7.1765 -3.7668 -4.6947 15 6 6.5437 -3.1689 -3.5888 16 6 6.3358 -3.9063 -2.4032 17 1 6.2468 -3.3933 -1.4569 18 6 6.2448 -5.3017 -2.4540 19 7 6.0247 -5.9020 -3.5958 20 14 6.4379 -6.3077 -0.8918 21 1 5.3883 -5.9150 0.0825 22 1 6.3011 -7.7512 -1.2126 23 1 7.7781 -6.0566 -0.3038 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.7210 -1.5952 1.2330 28 1 1.6054 -0.2618 -2.1369 29 1 1.7517 -1.7715 -1.2055 30 1 3.9995 -1.0728 -0.4258 31 1 3.8532 0.4370 -1.3572 32 1 3.7867 -2.3853 -2.5183 33 1 3.6404 -0.8760 -3.4504 34 1 7.1279 -1.1667 -6.8285 35 1 7.8689 -3.5068 -6.6807 36 1 7.5056 -4.7939 -4.6389 37 1 5.9620 -6.8693 -3.6310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418984523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:05 Heat of formation + Delta-G solvation = -107.605064 kcal Electronic energy + Delta-G solvation = -19997.138137 eV Core-core repulsion = 16784.225357 eV Total energy + Delta-G solvation = -3212.912780 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35497 -38.95422 -37.82608 -35.73529 -34.48002 -32.68145 -31.74138 -31.01129 -29.41916 -27.47207 -26.67643 -23.02409 -22.90080 -22.32077 -22.15295 -19.22968 -18.33578 -17.47479 -17.09134 -17.01740 -16.42111 -16.06301 -15.88302 -15.30399 -14.88302 -14.63906 -14.40102 -13.94039 -13.64986 -13.51717 -13.33068 -12.99784 -12.86569 -12.77634 -12.50481 -12.36736 -12.21342 -12.01915 -11.70737 -11.64665 -11.59834 -11.53896 -11.07967 -10.96867 -10.86313 -10.41092 -9.41386 -9.19967 -8.72231 -6.41340 0.64731 0.77877 0.93433 1.37064 1.46559 1.50222 2.17290 2.57104 2.97014 3.51375 3.62992 3.89736 4.03121 4.09396 4.30421 4.39885 4.51372 4.54401 4.59867 4.65274 4.74524 4.91350 4.93376 4.96375 5.02365 5.08856 5.16630 5.25961 5.27960 5.36138 5.37383 5.59492 5.85970 5.96155 6.11982 6.41124 6.70307 6.78841 6.86878 7.14812 8.22450 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.007947 B = 0.006588 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3522.444880 B = 4249.161766 C = 7411.731645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.104 3.896 3 H 0.095 0.905 4 O -0.583 6.583 5 C -0.140 4.140 6 C -0.100 4.100 7 C 0.070 3.930 8 O -0.328 6.328 9 C -0.025 4.025 10 C -0.074 4.074 11 Br -0.068 7.068 12 C -0.207 4.207 13 C -0.101 4.101 14 C -0.164 4.164 15 C 0.074 3.926 16 C -0.468 4.468 17 H 0.073 0.927 18 C 0.041 3.959 19 N -0.813 5.813 20 Si 0.977 3.023 21 H -0.260 1.260 22 H -0.262 1.262 23 H -0.262 1.262 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.386 0.614 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.040 0.960 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 6.567 1.443 10.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.045 3.955 3 H 0.113 0.887 4 O -0.390 6.390 5 C -0.178 4.178 6 C -0.138 4.138 7 C -0.004 4.004 8 O -0.245 6.245 9 C -0.071 4.071 10 C -0.153 4.153 11 Br 0.017 6.983 12 C -0.228 4.228 13 C -0.120 4.120 14 C -0.184 4.184 15 C 0.070 3.930 16 C -0.497 4.497 17 H 0.091 0.909 18 C -0.175 4.175 19 N -0.438 5.438 20 Si 0.798 3.202 21 H -0.184 1.184 22 H -0.186 1.186 23 H -0.186 1.186 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.235 0.765 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.133 0.867 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.459 7.685 1.535 10.819 hybrid contribution -0.056 -1.633 0.068 1.635 sum -7.515 6.052 1.603 9.781 Atomic orbital electron populations 1.22436 0.94707 1.03195 1.03225 1.21927 0.93855 0.96303 0.83367 0.88702 1.86552 1.77927 1.30168 1.44369 1.22200 0.93741 1.01961 0.99923 1.21338 0.96137 1.00404 0.95884 1.22619 0.80877 0.98500 0.98451 1.85895 1.19808 1.74771 1.44065 1.18508 1.06274 0.93789 0.88576 1.22045 1.06233 0.90447 0.96600 1.96396 1.90121 1.13224 1.98526 1.20554 1.08476 0.95960 0.97802 1.20763 0.99739 0.93644 0.97881 1.21134 1.02198 1.00571 0.94454 1.18139 0.90297 0.90244 0.94297 1.19576 1.43724 0.91901 0.94462 0.90886 1.26702 0.91018 0.98864 1.00965 1.69830 1.32864 1.12496 1.28603 0.85312 0.80147 0.77037 0.77734 1.18445 1.18644 1.18627 0.91652 0.91596 0.90598 0.76523 0.89893 0.91242 0.92164 0.91499 0.95525 0.94205 0.85435 0.85325 0.86709 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 9.53 71.98 0.69 -2.09 16 2 C 0.10 2.16 3.59 30.59 0.11 2.27 16 3 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 4 O -0.58 -13.86 12.88 -148.98 -1.92 -15.78 16 5 C -0.14 -3.35 4.89 30.60 0.15 -3.20 16 6 C -0.10 -3.20 5.48 30.59 0.17 -3.03 16 7 C 0.07 2.82 6.06 71.98 0.44 3.25 16 8 O -0.33 -15.55 8.70 -89.75 -0.78 -16.33 16 9 C -0.02 -1.23 5.75 23.09 0.13 -1.10 16 10 C -0.07 -3.34 6.23 22.37 0.14 -3.20 16 11 Br -0.07 -2.51 33.16 -20.37 -0.68 -3.19 16 12 C -0.21 -8.82 9.78 22.44 0.22 -8.60 16 13 C -0.10 -4.43 9.97 22.00 0.22 -4.21 16 14 C -0.16 -8.22 8.63 22.47 0.19 -8.03 16 15 C 0.07 3.93 5.58 -21.20 -0.12 3.82 16 16 C -0.47 -24.71 8.71 23.40 0.20 -24.51 16 17 H 0.07 3.92 7.66 -2.91 -0.02 3.90 16 18 C 0.04 1.99 5.16 85.25 0.44 2.43 16 19 N -0.81 -40.01 10.95 21.83 0.24 -39.77 16 20 Si 0.98 36.96 29.59 68.60 2.03 38.99 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.39 6.74 9.05 -74.06 -0.67 6.07 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 2.09 7.82 -2.38 -0.02 2.07 16 31 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 35 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 36 H 0.12 5.90 6.19 -2.91 -0.02 5.88 16 37 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 Total: -1.00 -58.62 334.37 2.27 -56.35 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.40 Total: 25.94 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 2.98 Total: -46.20 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.24 Total: -39.77 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -2.70 Total: -32.11 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 35 Polarization: -2.51 SS G_CDS: -0.68 Total: -3.19 kcal Total: -58.62 2.27 -56.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418984523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.256 kcal (2) G-P(sol) polarization free energy of solvation -58.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds