Wall clock time and date at job start Tue Mar 31 2020 14:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99914 * 2 1 4 4 N 1.46498 * 109.47224 * 125.00041 * 3 2 1 5 5 C 1.46502 * 119.99904 * 270.00315 * 4 3 2 6 6 C 1.50703 * 109.47183 * 269.99618 * 5 4 3 7 7 H 1.07996 * 119.99866 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99910 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00385 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99889 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47070 * 89.99566 * 10 8 6 12 12 H 1.48495 * 109.47258 * 210.00039 * 10 8 6 13 13 H 1.48504 * 109.47053 * 330.00086 * 10 8 6 14 14 C 1.34773 * 119.99926 * 90.00107 * 4 3 2 15 15 O 1.21588 * 119.99902 * 180.02562 * 14 4 3 16 16 N 1.34772 * 120.00097 * 0.02562 * 14 4 3 17 17 C 1.39940 * 119.99993 * 184.59237 * 16 14 4 18 18 C 1.38856 * 120.05812 * 144.91019 * 17 16 14 19 19 C 1.38229 * 119.94600 * 179.97438 * 18 17 16 20 20 Cl 1.73597 * 119.97450 * 179.97438 * 19 18 17 21 21 C 1.38382 * 120.05955 * 0.02562 * 19 18 17 22 22 C 1.38381 * 120.10672 * 359.95870 * 21 19 18 23 23 Cl 1.73604 * 119.97026 * 180.02562 * 22 21 19 24 24 C 1.38238 * 120.06330 * 0.04399 * 22 21 19 25 25 H 1.07999 * 119.99908 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99708 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.00317 * 180.02562 * 2 1 3 28 28 H 1.09009 * 109.46906 * 5.00315 * 3 2 1 29 29 H 1.08998 * 109.47759 * 245.00505 * 3 2 1 30 30 H 1.08994 * 109.47275 * 29.99908 * 5 4 3 31 31 H 1.08998 * 109.47272 * 149.99855 * 5 4 3 32 32 H 0.96991 * 120.00541 * 180.02562 * 9 8 6 33 33 H 0.96998 * 119.99860 * 4.59416 * 16 14 4 34 34 H 1.08001 * 120.02362 * 359.69827 * 18 17 16 35 35 H 1.07997 * 119.94662 * 179.97438 * 21 19 18 36 36 H 1.07992 * 120.03337 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5588 1.8649 2.4248 6 6 2.8442 3.3436 2.4805 7 1 3.3032 3.8371 1.6366 8 6 2.5193 4.0665 3.6087 9 7 1.9608 3.4655 4.6366 10 14 2.8723 5.8995 3.6774 11 1 1.6989 6.6493 3.1614 12 1 3.1371 6.3003 5.0825 13 1 4.0617 6.2061 2.8427 14 6 4.2497 0.8662 0.9823 15 8 5.0216 0.8881 1.9215 16 7 4.6500 0.3764 -0.2077 17 6 5.9208 -0.1949 -0.3375 18 6 6.1134 -1.2776 -1.1854 19 6 7.3698 -1.8397 -1.3122 20 17 7.6113 -3.1937 -2.3716 21 6 8.4352 -1.3249 -0.5947 22 6 8.2460 -0.2458 0.2507 23 17 9.5852 0.3976 1.1487 24 6 6.9915 0.3200 0.3812 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6213 1.4028 -0.9314 30 1 1.4888 1.6966 2.5459 31 1 3.0989 1.3603 3.2259 32 1 1.7318 3.9740 5.4301 33 1 4.0571 0.4198 -0.9742 34 1 5.2812 -1.6828 -1.7419 35 1 9.4160 -1.7658 -0.6949 36 1 6.8443 1.1619 1.0414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493897573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:31 Heat of formation + Delta-G solvation = -2.077750 kcal Electronic energy + Delta-G solvation = -22709.422796 eV Core-core repulsion = 19052.682531 eV Total energy + Delta-G solvation = -3656.740265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.87191 -40.09382 -37.78558 -37.66568 -37.17491 -35.83119 -34.94330 -33.73310 -31.72190 -30.98790 -29.22703 -26.98431 -25.34500 -24.07073 -23.43669 -21.43955 -20.72934 -19.53794 -18.70798 -18.53980 -17.57113 -16.97734 -16.87526 -16.36037 -16.14616 -15.77858 -15.55084 -15.24775 -15.13527 -14.65290 -14.39631 -14.13797 -13.41396 -13.36650 -13.29322 -13.12090 -13.05394 -12.88079 -12.57120 -12.47069 -12.24277 -12.21798 -12.19756 -11.96422 -11.68633 -11.25143 -11.00615 -10.62612 -10.33904 -9.80401 -9.67441 -9.21496 -8.20799 -6.35080 -0.09655 -0.03478 0.69736 1.20677 1.26785 1.37619 1.40606 1.50425 1.76216 2.03305 2.37996 2.49333 2.96277 3.09758 3.88440 3.94753 3.97252 4.00046 4.10035 4.18274 4.22424 4.34574 4.76326 4.87716 4.92675 5.01654 5.04380 5.05735 5.10965 5.22960 5.49682 5.66924 5.70349 5.73898 5.89495 6.00632 6.06682 6.73746 6.96017 7.31481 7.55438 8.85931 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.003706 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.073146 B = 7553.350386 C = 9545.567483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.187 4.187 3 C 0.132 3.868 4 N -0.604 5.604 5 C 0.281 3.719 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.283 1.283 13 H -0.274 1.274 14 C 0.696 3.304 15 O -0.613 6.613 16 N -0.672 5.672 17 C 0.189 3.811 18 C -0.125 4.125 19 C -0.003 4.003 20 Cl -0.040 7.040 21 C -0.119 4.119 22 C -0.011 4.011 23 Cl -0.059 7.059 24 C -0.132 4.132 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.027 0.973 31 H -0.001 1.001 32 H 0.267 0.733 33 H 0.424 0.576 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.387 -11.533 -17.680 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.206 4.206 3 C 0.010 3.990 4 N -0.337 5.337 5 C 0.160 3.840 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.788 3.212 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.199 1.199 14 C 0.398 3.602 15 O -0.492 6.492 16 N -0.323 5.323 17 C 0.092 3.908 18 C -0.147 4.147 19 C -0.031 4.031 20 Cl -0.011 7.011 21 C -0.139 4.139 22 C -0.038 4.038 23 Cl -0.030 7.030 24 C -0.153 4.153 25 H 0.118 0.882 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.045 0.955 31 H 0.018 0.982 32 H 0.076 0.924 33 H 0.265 0.735 34 H 0.188 0.812 35 H 0.181 0.819 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.878 -11.490 -16.803 21.487 hybrid contribution -0.087 1.068 0.464 1.168 sum 6.792 -10.422 -16.339 20.535 Atomic orbital electron populations 1.24066 0.95541 1.02946 0.97700 1.23306 0.96851 0.98066 1.02387 1.20824 0.92824 0.96879 0.88471 1.47415 1.09634 1.62565 1.14088 1.18651 0.93943 0.92407 0.79019 1.21711 1.40547 0.94457 1.01340 0.92797 1.25780 0.94726 1.03414 0.94881 1.70038 1.42850 1.37988 1.05752 0.85475 0.78809 0.79527 0.77351 1.18814 1.20852 1.19916 1.16073 0.82888 0.78517 0.82754 1.90888 1.53943 1.63046 1.41357 1.42551 1.15618 1.62649 1.11489 1.17233 0.83737 0.92806 0.97027 1.20961 0.97837 0.94101 1.01785 1.20349 0.93801 0.92665 0.96272 1.98390 1.97008 1.42265 1.63417 1.20991 1.00602 0.95791 0.96485 1.20542 0.88791 0.97157 0.97351 1.98378 1.44765 1.85934 1.73936 1.21287 0.90720 1.01793 1.01523 0.88160 0.86619 0.86888 0.89708 0.88104 0.95477 0.98239 0.92441 0.73518 0.81219 0.81902 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 14.32 67.78 0.97 -2.60 16 2 C -0.19 -4.51 9.85 25.64 0.25 -4.26 16 3 C 0.13 3.77 5.65 85.63 0.48 4.25 16 4 N -0.60 -24.47 2.44 -848.58 -2.07 -26.54 16 5 C 0.28 14.73 5.16 85.63 0.44 15.17 16 6 C -0.54 -30.48 9.39 25.60 0.24 -30.24 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.64 5.46 84.66 0.46 1.10 16 9 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 10 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 11 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 14 C 0.70 28.27 8.12 179.06 1.45 29.73 16 15 O -0.61 -31.11 13.36 -3.99 -0.05 -31.16 16 16 N -0.67 -19.25 5.21 -317.20 -1.65 -20.90 16 17 C 0.19 5.22 6.30 38.14 0.24 5.46 16 18 C -0.13 -2.54 9.75 22.42 0.22 -2.32 16 19 C 0.00 -0.06 6.32 22.30 0.14 0.08 16 20 Cl -0.04 -0.63 28.95 -2.72 -0.08 -0.71 16 21 C -0.12 -2.51 9.61 22.34 0.21 -2.29 16 22 C -0.01 -0.29 6.32 22.30 0.14 -0.15 16 23 Cl -0.06 -1.56 28.95 -2.72 -0.08 -1.64 16 24 C -0.13 -4.24 8.48 22.42 0.19 -4.05 16 25 H 0.10 2.17 7.84 -2.91 -0.02 2.14 16 26 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 27 H 0.11 2.56 8.06 -2.91 -0.02 2.53 16 28 H 0.08 2.57 7.72 -2.38 -0.02 2.55 16 29 H 0.10 2.12 6.30 -2.39 -0.02 2.11 16 30 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 31 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 32 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.42 8.70 6.52 -92.71 -0.60 8.10 16 34 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.13 5.05 6.22 -2.91 -0.02 5.03 16 Total: -1.00 -70.56 346.21 4.34 -66.21 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.52 Total: 13.39 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 5.45 Total: 9.88 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -3.44 Total: -102.43 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.05 Total: -31.16 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.16 Total: -2.35 kcal Total: -70.56 4.34 -66.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493897573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.135 kcal (2) G-P(sol) polarization free energy of solvation -70.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds