Wall clock time and date at job start Tue Mar 31 2020 14:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 119.99829 * 2 1 4 4 N 1.46502 * 109.46728 * 125.00864 * 3 2 1 5 5 C 1.46498 * 119.99382 * 269.99620 * 4 3 2 6 6 C 1.50696 * 109.47394 * 269.99799 * 5 4 3 7 7 H 1.08002 * 120.00236 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00181 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00167 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99858 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47239 * 90.00213 * 10 8 6 12 12 H 1.48502 * 109.47147 * 210.00306 * 10 8 6 13 13 H 1.48499 * 109.47403 * 329.99960 * 10 8 6 14 14 C 1.34771 * 120.00295 * 90.00020 * 4 3 2 15 15 O 1.21590 * 120.00121 * 179.97438 * 14 4 3 16 16 N 1.34773 * 120.00046 * 359.97438 * 14 4 3 17 17 C 1.40003 * 120.00175 * 184.59567 * 16 14 4 18 18 C 1.38883 * 120.04778 * 324.88871 * 17 16 14 19 19 C 1.38099 * 119.96868 * 180.02562 * 18 17 16 20 20 C 1.38373 * 120.06716 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 119.95130 * 180.27575 * 20 19 18 22 22 C 1.38475 * 120.10609 * 359.97438 * 20 19 18 23 23 Cl 1.73596 * 119.98883 * 180.02562 * 22 20 19 24 24 C 1.38248 * 120.03004 * 0.02562 * 22 20 19 25 25 H 1.07998 * 120.00130 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00016 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00016 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47313 * 5.00263 * 3 2 1 29 29 H 1.09001 * 109.46947 * 245.00397 * 3 2 1 30 30 H 1.09000 * 109.47483 * 30.00724 * 5 4 3 31 31 H 1.09007 * 109.46871 * 150.00562 * 5 4 3 32 32 H 0.96995 * 119.99948 * 179.97438 * 9 8 6 33 33 H 0.97004 * 119.99815 * 4.59288 * 16 14 4 34 34 H 1.08001 * 120.01444 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.96771 * 180.02562 * 19 18 17 36 36 H 1.07994 * 120.03940 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8444 3.3434 2.4805 7 1 3.3035 3.8370 1.6366 8 6 2.5196 4.0663 3.6088 9 7 1.9610 3.4653 4.6366 10 14 2.8728 5.8993 3.6774 11 1 1.6994 6.6492 3.1616 12 1 3.1377 6.3001 5.0826 13 1 4.0621 6.2059 2.8427 14 6 4.2497 0.8661 0.9822 15 8 5.0220 0.8887 1.9211 16 7 4.6496 0.3754 -0.2076 17 6 5.9210 -0.1962 -0.3375 18 6 6.9921 0.3196 0.3805 19 6 8.2456 -0.2452 0.2507 20 6 8.4357 -1.3242 -0.5944 21 17 10.0112 -2.0364 -0.7498 22 6 7.3698 -1.8409 -1.3117 23 17 7.6116 -3.1950 -2.3706 24 6 6.1132 -1.2787 -1.1850 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.4889 1.6965 2.5460 31 1 3.0992 1.3601 3.2259 32 1 1.7328 3.9738 5.4305 33 1 4.0565 0.4183 -0.9740 34 1 6.8447 1.1621 1.0401 35 1 9.0784 0.1557 0.8094 36 1 5.2819 -1.6813 -1.7447 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493910201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:35 Heat of formation + Delta-G solvation = 14.725610 kcal Electronic energy + Delta-G solvation = -22638.104522 eV Core-core repulsion = 18982.092905 eV Total energy + Delta-G solvation = -3656.011617 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.54510 -38.89698 -36.77313 -36.61323 -35.84294 -34.45723 -33.22274 -32.19524 -30.99791 -29.45675 -27.46073 -25.62820 -23.59207 -23.17266 -22.01479 -20.20436 -19.48860 -18.24682 -17.34208 -16.80542 -16.49413 -15.79467 -15.40852 -14.95835 -14.62677 -14.47968 -14.17585 -14.10483 -13.86252 -13.41473 -12.90911 -12.56566 -12.40390 -12.06376 -11.99462 -11.89819 -11.56416 -11.37894 -11.18965 -11.16030 -10.98827 -10.95848 -10.66626 -10.25204 -10.02493 -9.75140 -9.44110 -9.31612 -8.98867 -8.49420 -8.19189 -7.77325 -6.10328 -4.15638 0.92089 1.01527 1.72916 2.08774 2.31259 3.04250 3.26024 3.30763 3.33617 3.37577 3.77281 4.24508 4.42372 4.53696 5.00889 5.04843 5.07058 5.21474 5.24047 5.28469 5.39261 5.50715 5.62165 5.87466 6.00774 6.03675 6.15045 6.34933 6.60690 6.68911 6.82506 6.87079 7.25024 7.38052 7.52202 7.86234 8.14840 8.38689 8.83747 9.04623 9.49815 10.97595 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.003174 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.710167 B = 8820.404497 C =10303.649017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.599 5.599 5 C 0.261 3.739 6 C -0.530 4.530 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.699 3.301 15 O -0.564 6.564 16 N -0.694 5.694 17 C 0.201 3.799 18 C -0.105 4.105 19 C -0.078 4.078 20 C -0.057 4.057 21 Cl -0.061 7.061 22 C -0.010 4.010 23 Cl -0.055 7.055 24 C -0.140 4.140 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.405 0.595 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.382 -10.308 -14.853 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.194 4.194 3 C 0.012 3.988 4 N -0.332 5.332 5 C 0.142 3.858 6 C -0.569 4.569 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.401 3.599 15 O -0.439 6.439 16 N -0.344 5.344 17 C 0.103 3.897 18 C -0.125 4.125 19 C -0.097 4.097 20 C -0.085 4.085 21 Cl -0.032 7.032 22 C -0.038 4.038 23 Cl -0.026 7.026 24 C -0.162 4.162 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.243 0.757 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.908 -10.366 -13.987 18.730 hybrid contribution -0.146 0.765 -0.380 0.867 sum 6.762 -9.601 -14.367 18.556 Atomic orbital electron populations 1.23844 0.95806 1.01913 0.99805 1.23422 0.96537 0.98850 1.00566 1.20563 0.93228 0.95888 0.89122 1.47617 1.08589 1.62645 1.14377 1.19278 0.95385 0.93654 0.77448 1.21428 1.40855 0.93269 1.01320 0.92413 1.24921 0.94995 0.98776 0.95278 1.69928 1.41868 1.36215 1.05152 0.86499 0.78601 0.84913 0.77409 1.20651 1.21058 1.19889 1.15923 0.83424 0.78644 0.81918 1.90902 1.52596 1.61264 1.39180 1.43035 1.15285 1.63340 1.12725 1.17435 0.84962 0.91407 0.95876 1.21607 0.89767 1.01273 0.99899 1.20967 0.98197 0.93883 0.96675 1.20666 0.86431 0.98995 1.02435 1.98364 1.24575 1.83129 1.97130 1.20316 0.93515 0.93063 0.96929 1.98375 1.97056 1.43176 1.64033 1.20637 0.95994 0.95981 1.03585 0.88660 0.88160 0.87744 0.88825 0.91504 0.94631 0.93621 0.92633 0.75735 0.82111 0.83812 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 14.32 29.02 0.42 -1.65 16 2 C -0.17 -2.24 9.85 -36.02 -0.35 -2.59 16 3 C 0.14 1.98 5.65 -5.19 -0.03 1.95 16 4 N -0.60 -11.73 2.44 -182.18 -0.44 -12.18 16 5 C 0.26 6.48 5.16 -5.20 -0.03 6.45 16 6 C -0.53 -14.32 9.39 -34.44 -0.32 -14.65 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 10 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 14 C 0.70 13.59 8.12 -86.93 -0.71 12.88 16 15 O -0.56 -13.21 13.36 5.29 0.07 -13.14 16 16 N -0.69 -10.00 5.22 -14.22 -0.07 -10.07 16 17 C 0.20 2.79 6.30 -83.67 -0.53 2.27 16 18 C -0.10 -1.54 8.69 -39.39 -0.34 -1.88 16 19 C -0.08 -0.98 9.82 -39.58 -0.39 -1.37 16 20 C -0.06 -0.70 6.32 -39.44 -0.25 -0.95 16 21 Cl -0.06 -0.68 27.95 -51.86 -1.45 -2.13 16 22 C -0.01 -0.12 6.32 -39.49 -0.25 -0.37 16 23 Cl -0.06 -0.60 27.95 -51.86 -1.45 -2.05 16 24 C -0.14 -1.63 9.75 -39.36 -0.38 -2.02 16 25 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 26 H 0.10 1.16 7.84 -52.49 -0.41 0.75 16 27 H 0.10 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.09 1.43 7.72 -51.93 -0.40 1.03 16 29 H 0.07 0.77 6.30 -51.93 -0.33 0.44 16 30 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.41 4.53 6.52 -40.82 -0.27 4.27 16 34 H 0.16 2.76 6.22 -52.49 -0.33 2.43 16 35 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -30.67 344.66 -9.47 -40.14 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.77 Total: 3.37 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -3.26 Total: -0.29 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.22 Total: -47.26 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.07 Total: -13.14 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -2.90 Total: -4.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.67 -9.47 -40.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493910201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.865 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds