Wall clock time and date at job start Tue Mar 31 2020 14:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 119.99829 * 2 1 4 4 N 1.46502 * 109.46728 * 125.00864 * 3 2 1 5 5 C 1.46498 * 119.99382 * 269.99620 * 4 3 2 6 6 C 1.50696 * 109.47394 * 269.99799 * 5 4 3 7 7 H 1.08002 * 120.00236 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00181 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00167 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99858 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47239 * 90.00213 * 10 8 6 12 12 H 1.48502 * 109.47147 * 210.00306 * 10 8 6 13 13 H 1.48499 * 109.47403 * 329.99960 * 10 8 6 14 14 C 1.34771 * 120.00295 * 90.00020 * 4 3 2 15 15 O 1.21590 * 120.00121 * 179.97438 * 14 4 3 16 16 N 1.34773 * 120.00046 * 359.97438 * 14 4 3 17 17 C 1.40003 * 120.00175 * 184.59567 * 16 14 4 18 18 C 1.38883 * 120.04778 * 324.88871 * 17 16 14 19 19 C 1.38099 * 119.96868 * 180.02562 * 18 17 16 20 20 C 1.38373 * 120.06716 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 119.95130 * 180.27575 * 20 19 18 22 22 C 1.38475 * 120.10609 * 359.97438 * 20 19 18 23 23 Cl 1.73596 * 119.98883 * 180.02562 * 22 20 19 24 24 C 1.38248 * 120.03004 * 0.02562 * 22 20 19 25 25 H 1.07998 * 120.00130 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00016 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00016 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47313 * 5.00263 * 3 2 1 29 29 H 1.09001 * 109.46947 * 245.00397 * 3 2 1 30 30 H 1.09000 * 109.47483 * 30.00724 * 5 4 3 31 31 H 1.09007 * 109.46871 * 150.00562 * 5 4 3 32 32 H 0.96995 * 119.99948 * 179.97438 * 9 8 6 33 33 H 0.97004 * 119.99815 * 4.59288 * 16 14 4 34 34 H 1.08001 * 120.01444 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.96771 * 180.02562 * 19 18 17 36 36 H 1.07994 * 120.03940 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8444 3.3434 2.4805 7 1 3.3035 3.8370 1.6366 8 6 2.5196 4.0663 3.6088 9 7 1.9610 3.4653 4.6366 10 14 2.8728 5.8993 3.6774 11 1 1.6994 6.6492 3.1616 12 1 3.1377 6.3001 5.0826 13 1 4.0621 6.2059 2.8427 14 6 4.2497 0.8661 0.9822 15 8 5.0220 0.8887 1.9211 16 7 4.6496 0.3754 -0.2076 17 6 5.9210 -0.1962 -0.3375 18 6 6.9921 0.3196 0.3805 19 6 8.2456 -0.2452 0.2507 20 6 8.4357 -1.3242 -0.5944 21 17 10.0112 -2.0364 -0.7498 22 6 7.3698 -1.8409 -1.3117 23 17 7.6116 -3.1950 -2.3706 24 6 6.1132 -1.2787 -1.1850 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.4889 1.6965 2.5460 31 1 3.0992 1.3601 3.2259 32 1 1.7328 3.9738 5.4305 33 1 4.0565 0.4183 -0.9740 34 1 6.8447 1.1621 1.0401 35 1 9.0784 0.1557 0.8094 36 1 5.2819 -1.6813 -1.7447 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493910201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:34 Heat of formation + Delta-G solvation = -1.685193 kcal Electronic energy + Delta-G solvation = -22638.816148 eV Core-core repulsion = 18982.092905 eV Total energy + Delta-G solvation = -3656.723242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.85335 -40.08826 -37.82284 -37.54441 -37.20219 -35.80132 -34.92718 -33.72322 -32.01108 -30.74106 -29.15007 -26.97406 -25.28277 -24.22390 -23.35970 -21.42156 -20.72124 -19.48949 -18.68174 -18.52591 -17.84631 -16.96715 -16.88403 -16.35200 -16.08758 -15.61588 -15.59430 -15.21133 -14.87721 -14.72561 -14.40975 -14.13959 -13.66340 -13.29843 -13.18704 -13.06402 -12.89878 -12.87349 -12.63255 -12.56025 -12.25157 -12.20798 -12.07527 -11.92331 -11.67931 -11.25403 -10.96024 -10.61855 -10.34022 -9.99096 -9.62295 -9.10881 -8.19965 -6.34353 -0.13252 0.02122 0.78038 1.08215 1.28222 1.38959 1.41589 1.51526 1.78956 2.04167 2.39108 2.52016 2.97068 3.10603 3.59943 3.96960 4.00657 4.05987 4.13746 4.22815 4.33991 4.55790 4.60358 4.78225 4.92233 4.97741 5.05209 5.13406 5.18885 5.27566 5.50361 5.69943 5.71110 5.74363 5.89710 6.01621 6.07376 6.74583 6.96747 7.32250 7.56135 8.86707 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.003174 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.710167 B = 8820.404497 C =10303.649017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.187 4.187 3 C 0.132 3.868 4 N -0.605 5.605 5 C 0.281 3.719 6 C -0.541 4.541 7 H 0.055 0.945 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.965 3.035 11 H -0.265 1.265 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.697 3.303 15 O -0.612 6.612 16 N -0.673 5.673 17 C 0.183 3.817 18 C -0.123 4.123 19 C -0.076 4.076 20 C -0.057 4.057 21 Cl -0.049 7.049 22 C -0.014 4.014 23 Cl -0.039 7.039 24 C -0.122 4.122 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.026 0.974 31 H 0.000 1.000 32 H 0.267 0.733 33 H 0.422 0.578 34 H 0.130 0.870 35 H 0.158 0.842 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.397 -10.848 -17.132 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.206 4.206 3 C 0.010 3.990 4 N -0.338 5.338 5 C 0.160 3.840 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.789 3.211 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.399 3.601 15 O -0.492 6.492 16 N -0.324 5.324 17 C 0.086 3.914 18 C -0.144 4.144 19 C -0.095 4.095 20 C -0.086 4.086 21 Cl -0.020 7.020 22 C -0.042 4.042 23 Cl -0.010 7.010 24 C -0.143 4.143 25 H 0.133 0.867 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.044 0.956 31 H 0.018 0.982 32 H 0.075 0.925 33 H 0.263 0.737 34 H 0.148 0.852 35 H 0.175 0.825 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.912 -10.932 -16.354 20.851 hybrid contribution -0.097 0.823 0.267 0.871 sum 6.815 -10.109 -16.087 20.185 Atomic orbital electron populations 1.24063 0.95553 1.02942 0.97718 1.23312 0.96860 0.98099 1.02376 1.20818 0.92834 0.96815 0.88509 1.47419 1.09675 1.62592 1.14068 1.18655 0.93927 0.92449 0.79017 1.21712 1.40540 0.94424 1.01338 0.92712 1.25792 0.94731 1.03441 0.94893 1.70046 1.42870 1.38007 1.05750 0.85460 0.78809 0.79455 0.77339 1.18962 1.20887 1.19777 1.16045 0.82862 0.78478 0.82720 1.90873 1.53895 1.63107 1.41307 1.42603 1.15805 1.62493 1.11492 1.17551 0.84232 0.92570 0.97037 1.21433 0.91282 1.01281 1.00390 1.21029 0.97795 0.93907 0.96772 1.20758 0.87160 0.98664 1.02003 1.98371 1.23796 1.82834 1.97037 1.20441 0.93453 0.93385 0.96904 1.98385 1.97003 1.42252 1.63396 1.20794 0.96777 0.94470 1.02287 0.86664 0.88133 0.86945 0.89706 0.88102 0.95574 0.98165 0.92455 0.73687 0.85170 0.82479 0.81150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 14.32 67.78 0.97 -2.59 16 2 C -0.19 -4.51 9.85 25.65 0.25 -4.26 16 3 C 0.13 3.74 5.65 85.64 0.48 4.22 16 4 N -0.60 -24.13 2.44 -848.57 -2.07 -26.20 16 5 C 0.28 14.53 5.16 85.63 0.44 14.98 16 6 C -0.54 -30.05 9.39 25.60 0.24 -29.81 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 10 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 C 0.70 27.70 8.12 179.06 1.45 29.15 16 15 O -0.61 -30.21 13.36 -4.00 -0.05 -30.26 16 16 N -0.67 -18.87 5.22 -317.16 -1.65 -20.53 16 17 C 0.18 4.94 6.30 38.13 0.24 5.18 16 18 C -0.12 -3.69 8.69 22.39 0.19 -3.49 16 19 C -0.08 -1.88 9.82 22.27 0.22 -1.66 16 20 C -0.06 -1.32 6.32 22.36 0.14 -1.18 16 21 Cl -0.05 -1.02 27.95 -2.72 -0.08 -1.10 16 22 C -0.01 -0.29 6.32 22.33 0.14 -0.15 16 23 Cl -0.04 -0.74 27.95 -2.72 -0.08 -0.82 16 24 C -0.12 -2.56 9.75 22.41 0.22 -2.34 16 25 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 26 H 0.10 2.16 7.84 -2.91 -0.02 2.14 16 27 H 0.11 2.55 8.06 -2.91 -0.02 2.52 16 28 H 0.08 2.54 7.72 -2.39 -0.02 2.53 16 29 H 0.10 2.10 6.30 -2.39 -0.02 2.08 16 30 H 0.03 1.38 8.07 -2.39 -0.02 1.37 16 31 H 0.00 0.01 7.42 -2.38 -0.02 0.00 16 32 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.42 8.57 6.52 -92.71 -0.60 7.96 16 34 H 0.13 4.78 6.22 -2.91 -0.02 4.76 16 35 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 36 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -68.71 344.66 4.36 -64.36 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.52 Total: 14.10 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 5.46 Total: 9.12 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -3.44 Total: -101.23 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.05 Total: -30.26 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.15 Total: -1.92 kcal Total: -68.71 4.36 -64.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493910201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.670 kcal (2) G-P(sol) polarization free energy of solvation -68.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds