Wall clock time and date at job start Tue Mar 31 2020 14:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48492 * 109.47384 * 239.99733 * 3 2 1 5 5 H 1.48500 * 109.46729 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46863 * 119.99667 * 3 2 1 7 7 C 1.39950 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00494 * 197.86002 * 7 2 1 9 9 C 1.41400 * 119.99539 * 17.85436 * 7 2 1 10 10 C 1.40720 * 120.24537 * 24.39535 * 9 7 2 11 11 C 1.37615 * 119.74367 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25185 * 0.27407 * 11 10 9 13 13 C 1.50699 * 119.75289 * 179.70401 * 12 11 10 14 14 S 1.81004 * 109.46926 * 89.99601 * 13 12 11 15 15 C 1.76197 * 99.99797 * 180.02562 * 14 13 12 16 16 N 1.32566 * 120.53779 * 359.72494 * 15 14 13 17 17 C 1.32057 * 121.17812 * 179.71477 * 16 15 14 18 18 N 1.31297 * 122.19261 * 0.57302 * 17 16 15 19 19 C 1.33924 * 121.05361 * 359.71812 * 18 17 16 20 20 S 1.75752 * 131.27665 * 180.02562 * 19 18 17 21 21 C 1.75358 * 92.18365 * 179.97438 * 20 19 18 22 22 C 1.31899 * 111.38314 * 0.02562 * 21 20 19 23 23 C 1.39731 * 119.11133 * 0.02562 * 19 18 17 24 24 C 1.38637 * 120.49605 * 359.44024 * 12 11 10 25 25 C 1.37614 * 120.25085 * 0.55928 * 24 12 11 26 26 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.12205 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.87216 * 179.97438 * 11 10 9 29 29 H 1.08995 * 109.47407 * 209.99698 * 13 12 11 30 30 H 1.09000 * 109.46523 * 329.99904 * 13 12 11 31 31 H 1.08005 * 118.90617 * 180.29496 * 17 16 15 32 32 H 1.07999 * 124.30731 * 180.02562 * 21 20 19 33 33 H 1.08000 * 122.59033 * 180.02562 * 22 21 20 34 34 H 1.08007 * 119.87424 * 180.26009 * 24 12 11 35 35 H 1.08006 * 120.12966 * 179.69993 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3520 -2.4069 -0.3765 10 6 0.2208 -2.3616 -1.2123 11 6 -0.4100 -3.5308 -1.5714 12 6 0.0615 -4.7495 -1.1084 13 6 -0.6419 -6.0224 -1.5032 14 16 0.0837 -6.6632 -3.0327 15 6 -0.8991 -8.1085 -3.2555 16 7 -1.8483 -8.4186 -2.3835 17 6 -2.5960 -9.4956 -2.5411 18 7 -2.4356 -10.3166 -3.5531 19 6 -1.4990 -10.0915 -4.4835 20 16 -1.0563 -10.9941 -5.9252 21 6 0.2032 -9.8462 -6.3386 22 6 0.2730 -8.8698 -5.4545 23 6 -0.6833 -8.9629 -4.3679 24 6 1.1786 -4.8064 -0.2893 25 6 1.8252 -3.6500 0.0826 26 1 -0.4849 0.8401 -0.0004 27 1 -0.1513 -1.4129 -1.5699 28 1 -1.2786 -3.4984 -2.2125 29 1 -0.5286 -6.7612 -0.7100 30 1 -1.7009 -5.8182 -1.6612 31 1 -3.3621 -9.7107 -1.8108 32 1 0.8405 -9.9282 -7.2066 33 1 0.9866 -8.0630 -5.5340 34 1 1.5398 -5.7616 0.0623 35 1 2.6924 -3.6962 0.7248 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542224653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:39 Heat of formation + Delta-G solvation = 75.091293 kcal Electronic energy + Delta-G solvation = -20769.713178 eV Core-core repulsion = 17563.548641 eV Total energy + Delta-G solvation = -3206.164537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 328.040 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.91943 -37.75012 -36.33169 -34.13576 -33.69290 -31.34783 -30.24393 -29.43417 -27.68914 -25.35265 -24.85094 -23.84005 -21.39824 -21.14271 -20.30281 -19.10864 -18.10970 -17.44034 -16.34517 -15.84728 -15.44438 -15.33371 -14.97758 -14.43332 -14.31176 -14.05044 -13.97876 -13.52718 -13.02574 -12.63810 -12.60561 -12.28432 -12.08014 -11.75056 -11.40514 -11.35401 -11.28352 -11.17681 -11.13234 -10.85350 -10.60349 -10.28327 -9.79769 -9.53792 -9.43785 -9.33281 -9.23008 -8.53901 -7.65993 -7.54831 -7.44184 -6.92011 -4.49585 0.21190 0.68975 0.90162 1.38687 1.65760 1.96154 2.26175 2.82303 2.95759 2.99164 3.01529 3.23088 3.50429 3.81623 4.05688 4.17072 4.38257 4.49930 4.69008 4.88536 5.32108 5.54783 5.56314 5.64501 5.66884 5.84704 5.97979 6.19705 6.20825 6.27316 6.61705 6.82631 6.92117 7.12011 7.20368 7.46176 7.68639 7.84179 7.90413 7.94171 8.13673 8.48243 8.72979 8.81034 10.01389 Molecular weight = 328.04amu Principal moments of inertia in cm(-1) A = 0.030796 B = 0.002300 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.979679 B =12172.433667 C =12565.486403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.168 4.168 11 C -0.077 4.077 12 C -0.224 4.224 13 C -0.019 4.019 14 S -0.037 6.037 15 C 0.214 3.786 16 N -0.532 5.532 17 C 0.329 3.671 18 N -0.511 5.511 19 C 0.100 3.900 20 S 0.151 5.849 21 C -0.204 4.204 22 C -0.087 4.087 23 C -0.176 4.176 24 C -0.065 4.065 25 C -0.228 4.228 26 H 0.284 0.716 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.203 0.797 32 H 0.178 0.822 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 -14.417 -9.444 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.115 3.885 10 C -0.188 4.188 11 C -0.097 4.097 12 C -0.229 4.229 13 C -0.165 4.165 14 S 0.210 5.790 15 C -0.050 4.050 16 N -0.253 5.253 17 C 0.034 3.966 18 N -0.230 5.230 19 C -0.152 4.152 20 S 0.409 5.591 21 C -0.338 4.338 22 C -0.118 4.118 23 C -0.196 4.196 24 C -0.085 4.085 25 C -0.248 4.248 26 H 0.095 0.905 27 H 0.138 0.862 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.220 0.780 32 H 0.195 0.805 33 H 0.173 0.827 34 H 0.108 0.892 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.251 -15.348 -10.156 18.541 hybrid contribution 0.302 1.652 0.924 1.917 sum -1.949 -13.696 -9.232 16.631 Atomic orbital electron populations 1.69810 1.07699 1.29742 1.33521 1.25982 0.94778 1.01592 0.92089 0.86318 0.80181 0.79874 0.80159 1.18641 1.20196 1.18846 1.19676 0.98260 0.91271 1.39004 0.90131 1.17690 0.90830 0.92075 0.87907 1.21305 0.99404 0.96761 1.01296 1.20537 0.98175 0.92449 0.98563 1.18438 1.02553 0.91216 1.10676 1.22237 1.01298 0.98892 0.94082 1.86485 1.41726 1.16073 1.34738 1.24150 0.93871 0.97598 0.89427 1.68767 1.07533 1.20445 1.28516 1.24928 0.94683 0.84736 0.92301 1.68065 1.19429 1.32032 1.03519 1.23824 0.95605 0.96143 0.99610 1.84177 1.32093 1.26292 1.16585 1.25198 1.04230 0.99356 1.05064 1.20725 0.98695 1.00089 0.92251 1.20288 1.01507 0.98503 0.99330 1.20390 0.94522 0.96699 0.96879 1.20959 1.03943 0.92718 1.07154 0.90491 0.86228 0.89207 0.89541 0.89479 0.78021 0.80473 0.82682 0.89182 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.31 10.95 55.55 0.61 -18.70 16 2 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 17.75 29.60 -169.99 -5.03 12.72 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 7 C -0.45 -11.43 9.05 -37.74 -0.34 -11.77 16 8 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 9 C 0.12 3.01 5.58 -106.82 -0.60 2.41 16 10 C -0.17 -4.16 8.70 -38.87 -0.34 -4.50 16 11 C -0.08 -1.71 9.67 -39.66 -0.38 -2.09 16 12 C -0.22 -4.62 5.16 -104.33 -0.54 -5.16 16 13 C -0.02 -0.32 4.99 36.01 0.18 -0.14 16 14 S -0.04 -0.59 21.83 -107.50 -2.35 -2.93 16 15 C 0.21 3.27 7.07 -15.83 -0.11 3.16 16 16 N -0.53 -8.00 9.27 -12.93 -0.12 -8.12 16 17 C 0.33 4.29 12.26 -92.35 -1.13 3.16 16 18 N -0.51 -7.15 10.47 -13.32 -0.14 -7.29 16 19 C 0.10 1.37 7.69 -16.08 -0.12 1.24 16 20 S 0.15 1.52 23.23 -107.50 -2.50 -0.98 16 21 C -0.20 -1.81 11.03 28.83 0.32 -1.50 16 22 C -0.09 -0.97 10.05 -38.79 -0.39 -1.36 16 23 C -0.18 -2.46 6.04 -105.23 -0.64 -3.10 16 24 C -0.06 -1.38 9.67 -39.66 -0.38 -1.76 16 25 C -0.23 -5.32 9.80 -38.87 -0.38 -5.70 16 26 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 27 H 0.12 3.06 6.15 -52.49 -0.32 2.73 16 28 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.09 1.46 8.08 -51.92 -0.42 1.04 16 30 H 0.09 1.50 8.08 -51.92 -0.42 1.08 16 31 H 0.20 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -27.37 335.41 -12.67 -40.04 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.25 Total: 5.63 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -4.95 Total: -25.41 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.35 Total: -34.12 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -4.84 Total: -3.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.37 -12.67 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542224653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.127 kcal (2) G-P(sol) polarization free energy of solvation -27.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds