Wall clock time and date at job start Tue Mar 31 2020 14:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48492 * 109.47384 * 239.99733 * 3 2 1 5 5 H 1.48500 * 109.46729 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46863 * 119.99667 * 3 2 1 7 7 C 1.39950 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00494 * 197.86002 * 7 2 1 9 9 C 1.41400 * 119.99539 * 17.85436 * 7 2 1 10 10 C 1.40720 * 120.24537 * 24.39535 * 9 7 2 11 11 C 1.37615 * 119.74367 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25185 * 0.27407 * 11 10 9 13 13 C 1.50699 * 119.75289 * 179.70401 * 12 11 10 14 14 S 1.81004 * 109.46926 * 89.99601 * 13 12 11 15 15 C 1.76197 * 99.99797 * 180.02562 * 14 13 12 16 16 N 1.32566 * 120.53779 * 359.72494 * 15 14 13 17 17 C 1.32057 * 121.17812 * 179.71477 * 16 15 14 18 18 N 1.31297 * 122.19261 * 0.57302 * 17 16 15 19 19 C 1.33924 * 121.05361 * 359.71812 * 18 17 16 20 20 S 1.75752 * 131.27665 * 180.02562 * 19 18 17 21 21 C 1.75358 * 92.18365 * 179.97438 * 20 19 18 22 22 C 1.31899 * 111.38314 * 0.02562 * 21 20 19 23 23 C 1.39731 * 119.11133 * 0.02562 * 19 18 17 24 24 C 1.38637 * 120.49605 * 359.44024 * 12 11 10 25 25 C 1.37614 * 120.25085 * 0.55928 * 24 12 11 26 26 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.12205 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.87216 * 179.97438 * 11 10 9 29 29 H 1.08995 * 109.47407 * 209.99698 * 13 12 11 30 30 H 1.09000 * 109.46523 * 329.99904 * 13 12 11 31 31 H 1.08005 * 118.90617 * 180.29496 * 17 16 15 32 32 H 1.07999 * 124.30731 * 180.02562 * 21 20 19 33 33 H 1.08000 * 122.59033 * 180.02562 * 22 21 20 34 34 H 1.08007 * 119.87424 * 180.26009 * 24 12 11 35 35 H 1.08006 * 120.12966 * 179.69993 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3520 -2.4069 -0.3765 10 6 0.2208 -2.3616 -1.2123 11 6 -0.4100 -3.5308 -1.5714 12 6 0.0615 -4.7495 -1.1084 13 6 -0.6419 -6.0224 -1.5032 14 16 0.0837 -6.6632 -3.0327 15 6 -0.8991 -8.1085 -3.2555 16 7 -1.8483 -8.4186 -2.3835 17 6 -2.5960 -9.4956 -2.5411 18 7 -2.4356 -10.3166 -3.5531 19 6 -1.4990 -10.0915 -4.4835 20 16 -1.0563 -10.9941 -5.9252 21 6 0.2032 -9.8462 -6.3386 22 6 0.2730 -8.8698 -5.4545 23 6 -0.6833 -8.9629 -4.3679 24 6 1.1786 -4.8064 -0.2893 25 6 1.8252 -3.6500 0.0826 26 1 -0.4849 0.8401 -0.0004 27 1 -0.1513 -1.4129 -1.5699 28 1 -1.2786 -3.4984 -2.2125 29 1 -0.5286 -6.7612 -0.7100 30 1 -1.7009 -5.8182 -1.6612 31 1 -3.3621 -9.7107 -1.8108 32 1 0.8405 -9.9282 -7.2066 33 1 0.9866 -8.0630 -5.5340 34 1 1.5398 -5.7616 0.0623 35 1 2.6924 -3.6962 0.7248 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542224653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:38 Heat of formation + Delta-G solvation = 63.683435 kcal Electronic energy + Delta-G solvation = -20770.207860 eV Core-core repulsion = 17563.548641 eV Total energy + Delta-G solvation = -3206.659219 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 328.040 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92211 -39.51946 -37.22721 -35.88593 -34.74875 -33.05488 -31.22753 -31.17260 -29.37398 -26.37537 -26.12724 -25.26308 -22.94019 -22.25587 -21.97801 -20.17841 -19.25569 -19.13601 -17.41271 -17.15264 -16.82967 -16.40952 -16.14295 -15.88415 -15.68187 -15.60693 -15.17431 -14.82864 -14.27913 -13.97518 -13.87659 -13.83487 -13.46842 -13.37110 -12.86808 -12.75370 -12.59157 -12.42536 -12.32868 -12.16465 -12.10657 -11.71180 -11.51880 -11.31195 -10.99696 -10.39216 -10.38533 -9.43533 -9.38299 -9.23681 -8.76025 -8.68003 -6.36545 -0.74117 -0.37724 -0.00712 0.18550 0.75754 0.87804 1.11081 1.11905 1.29142 1.39256 1.50405 1.63386 2.19476 2.47635 2.72225 3.13068 3.20202 3.45937 3.69784 3.72145 4.06822 4.09312 4.09939 4.49015 4.56288 4.56908 4.74894 4.87910 5.01811 5.02981 5.04967 5.12351 5.31586 5.40267 5.58675 5.66052 5.89498 6.06569 6.14462 6.33282 6.65279 6.81482 6.89543 6.98124 8.27980 Molecular weight = 328.04amu Principal moments of inertia in cm(-1) A = 0.030796 B = 0.002300 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.979679 B =12172.433667 C =12565.486403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.493 4.493 8 H 0.079 0.921 9 C 0.087 3.913 10 C -0.191 4.191 11 C -0.082 4.082 12 C -0.211 4.211 13 C -0.015 4.015 14 S -0.030 6.030 15 C 0.196 3.804 16 N -0.547 5.547 17 C 0.319 3.681 18 N -0.518 5.518 19 C 0.068 3.932 20 S 0.192 5.808 21 C -0.176 4.176 22 C -0.115 4.115 23 C -0.184 4.184 24 C -0.067 4.067 25 C -0.242 4.242 26 H 0.290 0.710 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.235 0.765 32 H 0.218 0.782 33 H 0.164 0.836 34 H 0.117 0.883 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 -16.380 -11.098 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.522 4.522 8 H 0.097 0.903 9 C 0.084 3.916 10 C -0.211 4.211 11 C -0.102 4.102 12 C -0.214 4.214 13 C -0.162 4.162 14 S 0.215 5.785 15 C -0.068 4.068 16 N -0.268 5.268 17 C 0.024 3.976 18 N -0.237 5.237 19 C -0.183 4.183 20 S 0.450 5.550 21 C -0.311 4.311 22 C -0.145 4.145 23 C -0.204 4.204 24 C -0.087 4.087 25 C -0.262 4.262 26 H 0.101 0.899 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.251 0.749 32 H 0.235 0.765 33 H 0.182 0.818 34 H 0.135 0.865 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.055 -17.321 -11.798 21.058 hybrid contribution 0.137 1.868 1.252 2.253 sum -1.918 -15.453 -10.546 18.807 Atomic orbital electron populations 1.69862 1.09061 1.30882 1.34550 1.26796 0.95493 1.04631 0.91118 0.85245 0.78820 0.75510 0.80150 1.18422 1.19181 1.18277 1.19903 0.98531 0.92486 1.41314 0.90290 1.18020 0.91647 0.93143 0.88795 1.21269 1.00301 0.97026 1.02459 1.20745 0.98473 0.92356 0.98628 1.18715 1.01650 0.92101 1.08963 1.22052 1.01127 0.97489 0.95539 1.86269 1.41963 1.17171 1.33102 1.24057 0.94493 0.97642 0.90600 1.68741 1.07840 1.21339 1.28832 1.25553 0.95019 0.84135 0.92859 1.68139 1.19576 1.32203 1.03812 1.24407 0.95812 0.97147 1.00968 1.84114 1.31548 1.25342 1.14024 1.25724 1.03012 0.97378 1.04943 1.20836 0.99365 1.01745 0.92507 1.20572 1.02145 0.98230 0.99497 1.20678 0.94374 0.97167 0.96493 1.21161 1.04566 0.92933 1.07563 0.89905 0.87907 0.87644 0.88789 0.89273 0.74921 0.76521 0.81846 0.86493 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.89 10.95 21.83 0.24 -41.65 16 2 C 0.04 1.76 5.14 85.26 0.44 2.19 16 3 Si 0.98 37.13 29.60 68.60 2.03 39.16 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 5 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.49 -25.99 9.05 23.46 0.21 -25.78 16 8 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 9 C 0.09 4.60 5.58 -21.29 -0.12 4.49 16 10 C -0.19 -9.84 8.70 22.73 0.20 -9.64 16 11 C -0.08 -3.70 9.67 22.22 0.21 -3.48 16 12 C -0.21 -8.62 5.16 -19.67 -0.10 -8.72 16 13 C -0.01 -0.50 4.99 71.24 0.36 -0.15 16 14 S -0.03 -0.92 21.83 -56.49 -1.23 -2.15 16 15 C 0.20 5.79 7.07 85.49 0.60 6.40 16 16 N -0.55 -15.80 9.27 -194.83 -1.81 -17.60 16 17 C 0.32 7.87 12.26 180.95 2.22 10.09 16 18 N -0.52 -13.68 10.47 -196.05 -2.05 -15.74 16 19 C 0.07 1.73 7.69 84.74 0.65 2.39 16 20 S 0.19 3.25 23.23 -56.49 -1.31 1.94 16 21 C -0.18 -2.46 11.03 66.98 0.74 -1.72 16 22 C -0.11 -2.27 10.05 23.18 0.23 -2.04 16 23 C -0.18 -4.84 6.04 -20.26 -0.12 -4.96 16 24 C -0.07 -2.84 9.67 22.22 0.21 -2.62 16 25 C -0.24 -11.59 9.80 22.73 0.22 -11.37 16 26 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 27 H 0.10 5.55 6.15 -2.91 -0.02 5.53 16 28 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.09 3.04 8.08 -2.40 -0.02 3.02 16 30 H 0.09 2.98 8.08 -2.40 -0.02 2.96 16 31 H 0.23 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 34 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 35 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -61.41 335.41 2.96 -58.45 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 1.13 Total: 22.52 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 5.96 Total: -44.92 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -3.62 Total: -74.99 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.55 Total: -0.21 kcal Total: -61.41 2.96 -58.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542224653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.130 kcal (2) G-P(sol) polarization free energy of solvation -61.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds