Wall clock time and date at job start Tue Mar 31 2020 14:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48491 * 109.47313 * 269.99977 * 3 2 1 5 5 H 1.48501 * 109.46879 * 29.99939 * 3 2 1 6 6 H 1.48499 * 109.47205 * 149.99761 * 3 2 1 7 7 C 1.39950 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00494 * 197.86002 * 7 2 1 9 9 C 1.41402 * 119.99673 * 17.85869 * 7 2 1 10 10 C 1.40718 * 120.24523 * 24.38625 * 9 7 2 11 11 C 1.37617 * 119.74355 * 180.02562 * 10 9 7 12 12 C 1.38627 * 120.24981 * 0.28290 * 11 10 9 13 13 C 1.50699 * 119.75123 * 179.69930 * 12 11 10 14 14 S 1.81006 * 109.47175 * 89.99844 * 13 12 11 15 15 C 1.76203 * 100.00021 * 180.02562 * 14 13 12 16 16 N 1.32841 * 120.56571 * 359.72080 * 15 14 13 17 17 C 1.32088 * 120.76030 * 179.67890 * 16 15 14 18 18 N 1.30936 * 122.57965 * 0.64055 * 17 16 15 19 19 C 1.35315 * 121.14741 * 359.66835 * 18 17 16 20 20 C 1.40373 * 129.71059 * 180.02562 * 19 18 17 21 21 C 1.32369 * 115.78293 * 179.97438 * 20 19 18 22 22 S 1.75577 * 110.74699 * 359.97438 * 21 20 19 23 23 C 1.39664 * 117.78725 * 0.02562 * 19 18 17 24 24 C 1.38640 * 120.50135 * 359.44114 * 12 11 10 25 25 C 1.37614 * 120.24727 * 0.55361 * 24 12 11 26 26 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.12252 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.87251 * 180.02562 * 11 10 9 29 29 H 1.09003 * 109.47706 * 209.99624 * 13 12 11 30 30 H 1.08998 * 109.47001 * 329.99739 * 13 12 11 31 31 H 1.07999 * 118.71439 * 180.31018 * 17 16 15 32 32 H 1.07999 * 122.10700 * 0.02562 * 20 19 18 33 33 H 1.07995 * 124.63010 * 180.02562 * 21 20 19 34 34 H 1.08007 * 119.87785 * 180.25959 * 24 12 11 35 35 H 1.07996 * 120.12914 * 179.70403 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6526 0.7000 6 1 3.5398 1.4401 0.7001 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3520 -2.4069 -0.3766 10 6 0.2208 -2.3616 -1.2123 11 6 -0.4100 -3.5308 -1.5715 12 6 0.0616 -4.7494 -1.1085 13 6 -0.6418 -6.0223 -1.5033 14 16 0.0838 -6.6632 -3.0328 15 6 -0.8991 -8.1085 -3.2556 16 7 -1.8504 -8.4198 -2.3821 17 6 -2.5936 -9.4990 -2.5487 18 7 -2.4323 -10.3172 -3.5581 19 6 -1.4860 -10.0907 -4.4985 20 6 -1.1601 -10.8380 -5.6411 21 6 -0.1731 -10.3578 -6.3810 22 16 0.4583 -8.8733 -5.6879 23 6 -0.6859 -8.9547 -4.3566 24 6 1.1786 -4.8064 -0.2893 25 6 1.8252 -3.6500 0.0826 26 1 -0.4849 0.8401 -0.0004 27 1 -0.1509 -1.4129 -1.5704 28 1 -1.2781 -3.4985 -2.2132 29 1 -0.5286 -6.7613 -0.7101 30 1 -1.7008 -5.8183 -1.6613 31 1 -3.3611 -9.7179 -1.8211 32 1 -1.6824 -11.7470 -5.9008 33 1 0.1933 -10.8161 -7.2876 34 1 1.5398 -5.7616 0.0623 35 1 2.6923 -3.6962 0.7247 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543149868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:35 Heat of formation + Delta-G solvation = 78.179884 kcal Electronic energy + Delta-G solvation = -20761.376449 eV Core-core repulsion = 17555.345843 eV Total energy + Delta-G solvation = -3206.030606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 328.040 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97852 -37.74346 -36.59349 -34.12552 -33.26703 -31.37352 -30.68357 -29.42782 -27.69288 -25.24386 -24.94034 -23.84804 -21.72922 -21.13520 -20.22906 -18.64519 -17.88641 -17.43470 -17.08115 -15.58346 -15.41390 -15.32817 -14.87296 -14.55627 -14.36611 -14.04097 -13.93781 -13.53570 -13.03310 -12.68127 -12.61206 -12.26374 -12.07297 -11.73995 -11.57856 -11.33042 -11.19837 -11.13772 -10.94589 -10.80425 -10.56868 -10.28624 -9.78052 -9.52398 -9.50747 -9.38817 -9.24031 -8.54661 -7.64924 -7.54221 -7.43721 -6.91488 -4.49024 0.15116 0.65725 1.12005 1.42971 1.58829 1.93391 2.28072 2.81788 2.96459 3.00597 3.03339 3.23493 3.59970 3.77615 3.82328 4.19283 4.50408 4.52123 4.70100 4.81673 5.33110 5.54553 5.55415 5.56853 5.64896 5.69527 6.13128 6.20788 6.21666 6.28021 6.67555 6.83355 6.92872 7.12660 7.20969 7.46960 7.69237 7.91374 7.92135 7.94817 8.14284 8.49097 8.73684 8.81662 10.01959 Molecular weight = 328.04amu Principal moments of inertia in cm(-1) A = 0.027976 B = 0.002431 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.632346 B =11515.850548 C =12003.541323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.452 4.452 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.168 4.168 11 C -0.077 4.077 12 C -0.224 4.224 13 C -0.014 4.014 14 S -0.048 6.048 15 C 0.217 3.783 16 N -0.523 5.523 17 C 0.316 3.684 18 N -0.513 5.513 19 C 0.177 3.823 20 C -0.127 4.127 21 C -0.164 4.164 22 S 0.163 5.837 23 C -0.258 4.258 24 C -0.064 4.064 25 C -0.227 4.227 26 H 0.283 0.717 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.200 0.800 32 H 0.155 0.845 33 H 0.180 0.820 34 H 0.090 0.910 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 -14.848 -9.786 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.115 3.885 10 C -0.187 4.187 11 C -0.097 4.097 12 C -0.229 4.229 13 C -0.160 4.160 14 S 0.198 5.802 15 C -0.049 4.049 16 N -0.244 5.244 17 C 0.021 3.979 18 N -0.231 5.231 19 C 0.034 3.966 20 C -0.158 4.158 21 C -0.302 4.302 22 S 0.425 5.575 23 C -0.384 4.384 24 C -0.085 4.085 25 C -0.247 4.247 26 H 0.094 0.906 27 H 0.138 0.862 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.217 0.783 32 H 0.172 0.828 33 H 0.197 0.803 34 H 0.108 0.892 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.693 -13.514 -10.233 16.965 hybrid contribution -1.326 -0.619 0.655 1.603 sum -2.019 -14.132 -9.578 17.191 Atomic orbital electron populations 1.69820 1.07699 1.29629 1.33615 1.25986 0.94779 1.01605 0.92095 0.86260 0.80518 0.80229 0.79499 1.19091 1.20176 1.18462 1.19716 0.98289 0.91248 1.38911 0.90075 1.17700 0.90826 0.92093 0.87901 1.21305 0.99391 0.96754 1.01287 1.20537 0.98186 0.92445 0.98529 1.18441 1.02582 0.91208 1.10681 1.22218 1.01220 0.98864 0.93721 1.86533 1.41969 1.16344 1.35391 1.23531 0.94520 0.97611 0.89270 1.69051 1.07183 1.20255 1.27874 1.24764 0.95093 0.85199 0.92858 1.68481 1.19423 1.31664 1.03526 1.19130 0.91679 0.91318 0.94427 1.19552 0.99959 1.02495 0.93818 1.25652 1.00349 1.00009 1.04223 1.84454 1.34577 1.22396 1.16115 1.23878 1.07006 1.03495 1.04047 1.20393 0.94496 0.96714 0.96862 1.20959 1.03927 0.92711 1.07138 0.90552 0.86220 0.89197 0.89492 0.89432 0.78342 0.82765 0.80254 0.89170 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.39 10.95 55.55 0.61 -18.78 16 2 C 0.07 1.79 5.14 -17.34 -0.09 1.71 16 3 Si 0.91 17.85 29.60 -169.99 -5.03 12.82 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.45 -11.48 9.05 -37.74 -0.34 -11.82 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.12 3.02 5.58 -106.82 -0.60 2.43 16 10 C -0.17 -4.18 8.70 -38.87 -0.34 -4.52 16 11 C -0.08 -1.72 9.67 -39.66 -0.38 -2.11 16 12 C -0.22 -4.69 5.16 -104.33 -0.54 -5.23 16 13 C -0.01 -0.25 4.99 36.01 0.18 -0.07 16 14 S -0.05 -0.80 21.90 -107.50 -2.35 -3.16 16 15 C 0.22 3.43 7.03 -16.27 -0.11 3.32 16 16 N -0.52 -8.03 9.31 -13.32 -0.12 -8.15 16 17 C 0.32 4.20 12.23 -92.63 -1.13 3.07 16 18 N -0.51 -7.15 10.51 -12.95 -0.14 -7.29 16 19 C 0.18 2.39 7.02 -84.99 -0.60 1.79 16 20 C -0.13 -1.27 10.16 -40.70 -0.41 -1.68 16 21 C -0.16 -1.35 11.10 28.81 0.32 -1.03 16 22 S 0.16 1.80 23.08 -107.50 -2.48 -0.68 16 23 C -0.26 -3.66 6.39 -38.20 -0.24 -3.91 16 24 C -0.06 -1.39 9.67 -39.66 -0.38 -1.77 16 25 C -0.23 -5.36 9.80 -38.87 -0.38 -5.74 16 26 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 27 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 28 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 29 H 0.09 1.49 8.08 -51.91 -0.42 1.07 16 30 H 0.09 1.53 8.08 -51.92 -0.42 1.11 16 31 H 0.20 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 335.20 15.07 5.05 5.05 Total: -1.00 -27.78 335.20 -12.77 -40.55 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -3.25 Total: 5.22 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -5.05 Total: -25.57 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.35 Total: -34.22 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -4.84 Total: -3.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.78 -12.77 -40.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543149868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.725 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds