Wall clock time and date at job start Tue Mar 31 2020 15:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47518 * 239.99457 * 2 1 3 5 5 C 1.50699 * 109.46861 * 59.99964 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47227 * 90.00066 * 9 7 5 11 11 H 1.48500 * 109.46628 * 209.99752 * 9 7 5 12 12 H 1.48493 * 109.47109 * 329.99411 * 9 7 5 13 13 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 14 14 N 1.46506 * 109.47035 * 300.00027 * 13 2 1 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 2 16 16 O 1.21695 * 119.99811 * 0.02562 * 15 14 13 17 17 C 1.46666 * 119.99958 * 180.02562 * 15 14 13 18 18 C 1.37894 * 126.22554 * 179.69087 * 17 15 14 19 19 C 1.39881 * 107.09068 * 179.84747 * 18 17 15 20 20 Br 1.89100 * 126.06966 * 180.16086 * 19 18 17 21 21 C 1.35503 * 107.85432 * 0.42275 * 19 18 17 22 22 N 1.35607 * 108.85551 * 359.73473 * 21 19 18 23 23 H 0.96999 * 125.67135 * 180.02562 * 22 21 19 24 24 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 25 25 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 26 26 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 29 29 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 30 30 H 1.08992 * 109.47534 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47134 * 300.00498 * 4 2 1 32 32 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 34 34 H 1.09000 * 109.47312 * 60.00201 * 13 2 1 35 35 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 36 36 H 1.08004 * 126.45054 * 0.02562 * 18 17 15 37 37 H 1.07997 * 125.56957 * 179.75941 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 2.2273 1.4394 -5.6615 11 1 1.0827 -0.5807 -6.3612 12 1 -0.0593 1.0368 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4455 15 6 1.8767 -0.4911 3.6696 16 8 2.5763 -1.4805 3.7813 17 6 1.3873 0.2001 4.8671 18 6 1.6346 -0.1610 6.1747 19 6 0.9826 0.7709 6.9889 20 35 0.9730 0.7833 8.8798 21 6 0.3542 1.6598 6.1820 22 7 0.5927 1.3237 4.8900 23 1 0.2590 1.7966 4.1117 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7209 -1.2493 31 1 1.6767 -1.7489 -1.2491 32 1 2.8610 -1.8832 -4.7335 33 1 3.1300 -0.7208 1.2496 34 1 1.6767 -1.7488 1.2494 35 1 0.9936 0.7580 2.3564 36 1 2.2235 -1.0030 6.5075 37 1 -0.2391 2.4991 6.5136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554099556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:10 Heat of formation + Delta-G solvation = -10.030847 kcal Electronic energy + Delta-G solvation = -19659.717446 eV Core-core repulsion = 16483.328553 eV Total energy + Delta-G solvation = -3176.388893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63897 -39.27186 -37.15293 -33.85141 -32.56761 -32.07463 -30.37113 -29.15746 -27.18707 -26.63696 -26.28174 -23.52452 -22.24820 -20.42449 -20.39310 -19.45157 -17.92908 -16.42234 -16.10020 -15.53014 -15.41963 -14.58047 -14.48975 -14.20563 -13.89521 -13.53379 -13.20573 -13.04679 -12.97741 -12.83069 -12.26000 -12.12650 -11.35909 -11.26338 -11.09660 -10.92243 -10.72832 -10.51220 -10.47801 -10.34010 -10.14479 -9.98188 -9.28413 -9.16731 -9.00641 -8.96761 -8.52849 -8.41568 -6.05495 -4.07293 1.19128 1.49402 2.11333 2.76420 3.23988 3.26596 3.29199 3.34124 3.35325 4.39960 4.57946 4.70161 4.87883 5.27994 5.29820 5.42077 5.50999 5.59765 5.61424 6.02016 6.06222 6.11966 6.18171 6.26865 6.31742 6.39928 6.51349 6.61361 6.87813 6.94208 6.96777 7.01829 7.52535 7.57517 7.68609 7.92406 8.18218 8.33826 8.97251 9.56126 11.05881 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.049455 B = 0.002140 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.030898 B =13082.727337 C =13452.395005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.128 3.872 14 N -0.719 5.719 15 C 0.581 3.419 16 O -0.527 6.527 17 C -0.035 4.035 18 C -0.083 4.083 19 C -0.181 4.181 20 Br -0.030 7.030 21 C 0.059 3.941 22 N -0.530 5.530 23 H 0.423 0.577 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.392 0.608 36 H 0.157 0.843 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 8.680 23.996 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.006 3.994 14 N -0.370 5.370 15 C 0.367 3.633 16 O -0.403 6.403 17 C -0.149 4.149 18 C -0.110 4.110 19 C -0.268 4.268 20 Br 0.054 6.946 21 C -0.080 4.080 22 N -0.126 5.126 23 H 0.262 0.738 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.226 0.774 36 H 0.175 0.825 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.589 7.872 24.419 26.258 hybrid contribution -0.755 1.083 -1.728 2.175 sum -6.344 8.955 22.690 25.205 Atomic orbital electron populations 1.21769 0.95272 1.01303 1.00077 1.20924 0.95444 0.95855 0.95092 1.21768 1.00726 0.95851 1.00075 1.19092 0.96453 0.95276 0.89347 1.21155 1.31363 1.12115 0.90493 0.92298 1.25018 0.95297 0.95049 0.99116 1.69961 1.36815 1.22923 1.23534 0.86641 0.79145 0.79426 0.83053 1.20751 1.21292 1.19977 1.21719 0.99210 0.96141 0.82375 1.46105 1.53163 1.31775 1.05981 1.16989 0.80641 0.83913 0.81770 1.90866 1.37860 1.25459 1.86131 1.20645 1.05080 0.93435 0.95699 1.21193 1.00812 0.99727 0.89301 1.20995 1.11570 1.03435 0.90752 1.96617 1.98606 1.98888 1.00508 1.21862 1.02909 1.01088 0.82183 1.42076 1.39406 1.23105 1.08045 0.73809 0.95634 0.91261 0.93183 0.93180 0.91270 0.95628 0.96228 0.96221 0.92965 0.91364 0.91362 0.77365 0.82523 0.80225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.05 37.16 0.30 -1.78 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.07 8.05 37.16 0.30 -1.78 16 4 C 0.04 0.85 4.04 -27.89 -0.11 0.73 16 5 C -0.51 -13.21 7.65 -34.44 -0.26 -13.48 16 6 H 0.06 1.45 5.68 -52.48 -0.30 1.15 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.13 2.14 4.56 -4.04 -0.02 2.12 16 14 N -0.72 -9.69 4.95 -61.62 -0.31 -9.99 16 15 C 0.58 8.53 7.79 -12.86 -0.10 8.43 16 16 O -0.53 -9.81 16.88 5.19 0.09 -9.73 16 17 C -0.03 -0.41 7.05 -81.98 -0.58 -0.99 16 18 C -0.08 -0.98 10.63 -39.09 -0.42 -1.40 16 19 C -0.18 -1.79 6.53 -39.94 -0.26 -2.05 16 20 Br -0.03 -0.27 34.08 -68.01 -2.32 -2.59 16 21 C 0.06 0.45 11.86 -16.86 -0.20 0.25 16 22 N -0.53 -4.22 6.00 -9.36 -0.06 -4.28 16 23 H 0.42 2.18 8.19 -40.82 -0.33 1.84 16 24 H 0.02 0.32 6.86 -51.93 -0.36 -0.03 16 25 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 29 H 0.02 0.32 6.86 -51.93 -0.36 -0.03 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.39 4.19 5.29 -40.82 -0.22 3.97 16 36 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 37 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -31.09 327.66 -8.24 -39.32 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.77 Total: 1.63 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.53 Total: -9.86 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.38 Total: -39.45 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -2.32 Total: -2.59 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.09 -8.24 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554099556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.293 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds