Wall clock time and date at job start Tue Mar 31 2020 15:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47518 * 239.99457 * 2 1 3 5 5 C 1.50699 * 109.46861 * 59.99964 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47227 * 90.00066 * 9 7 5 11 11 H 1.48500 * 109.46628 * 209.99752 * 9 7 5 12 12 H 1.48493 * 109.47109 * 329.99411 * 9 7 5 13 13 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 14 14 N 1.46506 * 109.47035 * 300.00027 * 13 2 1 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 2 16 16 O 1.21695 * 119.99811 * 0.02562 * 15 14 13 17 17 C 1.46666 * 119.99958 * 180.02562 * 15 14 13 18 18 C 1.37894 * 126.22554 * 179.69087 * 17 15 14 19 19 C 1.39881 * 107.09068 * 179.84747 * 18 17 15 20 20 Br 1.89100 * 126.06966 * 180.16086 * 19 18 17 21 21 C 1.35503 * 107.85432 * 0.42275 * 19 18 17 22 22 N 1.35607 * 108.85551 * 359.73473 * 21 19 18 23 23 H 0.96999 * 125.67135 * 180.02562 * 22 21 19 24 24 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 25 25 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 26 26 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 29 29 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 30 30 H 1.08992 * 109.47534 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47134 * 300.00498 * 4 2 1 32 32 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 34 34 H 1.09000 * 109.47312 * 60.00201 * 13 2 1 35 35 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 36 36 H 1.08004 * 126.45054 * 0.02562 * 18 17 15 37 37 H 1.07997 * 125.56957 * 179.75941 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 2.2273 1.4394 -5.6615 11 1 1.0827 -0.5807 -6.3612 12 1 -0.0593 1.0368 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4455 15 6 1.8767 -0.4911 3.6696 16 8 2.5763 -1.4805 3.7813 17 6 1.3873 0.2001 4.8671 18 6 1.6346 -0.1610 6.1747 19 6 0.9826 0.7709 6.9889 20 35 0.9730 0.7833 8.8798 21 6 0.3542 1.6598 6.1820 22 7 0.5927 1.3237 4.8900 23 1 0.2590 1.7966 4.1117 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7209 -1.2493 31 1 1.6767 -1.7489 -1.2491 32 1 2.8610 -1.8832 -4.7335 33 1 3.1300 -0.7208 1.2496 34 1 1.6767 -1.7488 1.2494 35 1 0.9936 0.7580 2.3564 36 1 2.2235 -1.0030 6.5075 37 1 -0.2391 2.4991 6.5136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554099556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:09 Heat of formation + Delta-G solvation = -30.182588 kcal Electronic energy + Delta-G solvation = -19660.591291 eV Core-core repulsion = 16483.328553 eV Total energy + Delta-G solvation = -3177.262738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.44437 -40.48260 -38.61462 -35.36649 -34.07696 -33.14186 -31.17793 -30.06057 -29.02034 -27.98510 -27.56786 -25.15822 -23.51885 -21.36648 -21.16774 -20.55795 -19.30933 -18.37124 -17.18957 -16.65243 -16.63197 -16.42541 -15.56245 -15.20110 -14.98209 -14.83562 -14.65434 -14.38177 -13.95219 -13.78119 -13.77574 -13.73546 -12.88686 -12.73512 -12.61566 -12.35468 -12.24674 -12.04347 -11.99738 -11.56361 -11.48861 -11.13733 -10.96688 -10.85967 -10.51708 -10.27059 -9.90678 -9.30183 -8.14326 -6.22141 0.31080 0.80212 1.36570 1.42710 1.43017 1.53119 1.93274 2.22102 2.22234 2.44525 3.20478 3.75084 3.94168 4.04820 4.05529 4.17092 4.18982 4.52098 4.64938 4.68607 4.77586 4.82623 4.92558 5.05376 5.10592 5.28399 5.32404 5.41581 5.49907 5.50828 5.52210 5.56092 5.79184 5.89490 6.27362 6.30410 6.48382 6.93306 7.06697 7.45777 8.98191 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.049455 B = 0.002140 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.030898 B =13082.727337 C =13452.395005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.038 3.962 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.258 1.258 13 C 0.141 3.859 14 N -0.704 5.704 15 C 0.583 3.417 16 O -0.577 6.577 17 C -0.056 4.056 18 C -0.093 4.093 19 C -0.205 4.205 20 Br -0.025 7.025 21 C 0.095 3.905 22 N -0.512 5.512 23 H 0.440 0.560 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.058 0.942 29 H 0.071 0.929 30 H -0.014 1.014 31 H -0.014 1.014 32 H 0.259 0.741 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.409 0.591 36 H 0.142 0.858 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 11.936 25.215 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.000 4.000 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.182 1.182 13 C 0.017 3.983 14 N -0.355 5.355 15 C 0.371 3.629 16 O -0.456 6.456 17 C -0.170 4.170 18 C -0.121 4.121 19 C -0.291 4.291 20 Br 0.059 6.941 21 C -0.047 4.047 22 N -0.110 5.110 23 H 0.282 0.718 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.005 0.995 31 H 0.005 0.995 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.247 0.753 36 H 0.160 0.840 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.937 11.184 25.628 29.067 hybrid contribution -0.035 0.069 -1.984 1.986 sum -7.972 11.252 23.643 27.371 Atomic orbital electron populations 1.21711 0.93438 1.01088 1.01747 1.20707 0.96783 0.96340 0.92574 1.21712 1.00013 0.94506 1.01769 1.18985 0.94362 0.94279 0.92346 1.21586 1.30395 1.12063 0.90967 0.90766 1.25959 0.95726 0.95848 1.02771 1.70124 1.38819 1.24977 1.24083 0.85545 0.79206 0.78083 0.78807 1.20212 1.21753 1.18215 1.21299 0.98088 0.95532 0.83388 1.45775 1.53126 1.31981 1.04668 1.17332 0.79694 0.83289 0.82543 1.90841 1.40162 1.27792 1.86843 1.20010 1.07529 0.95406 0.94044 1.21253 1.00881 0.99913 0.90074 1.21125 1.12623 1.03979 0.91328 1.96623 1.98628 1.98887 0.99988 1.22522 1.00471 1.00436 0.81221 1.42008 1.38154 1.21747 1.09096 0.71825 0.91068 0.92375 0.94436 0.94438 0.92337 0.91066 0.99539 0.99526 0.93207 0.93196 0.93194 0.75289 0.83986 0.75957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 8.05 71.98 0.58 -3.19 16 2 C -0.06 -2.25 0.54 -52.18 -0.03 -2.28 16 3 C -0.12 -3.77 8.05 71.98 0.58 -3.19 16 4 C 0.04 1.87 4.04 29.85 0.12 1.99 16 5 C -0.51 -26.61 7.65 25.60 0.20 -26.41 16 6 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 7 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 8 N -0.94 -56.44 13.29 21.45 0.28 -56.15 16 9 Si 0.96 42.68 29.54 68.60 2.03 44.70 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 13 C 0.14 4.77 4.56 86.38 0.39 5.17 16 14 N -0.70 -17.85 4.95 -467.07 -2.31 -20.16 16 15 C 0.58 16.81 7.79 86.44 0.67 17.48 16 16 O -0.58 -22.21 16.88 -4.33 -0.07 -22.29 16 17 C -0.06 -1.22 7.05 40.35 0.28 -0.94 16 18 C -0.09 -2.11 10.63 22.59 0.24 -1.87 16 19 C -0.21 -3.53 6.53 22.04 0.14 -3.38 16 20 Br -0.02 -0.40 34.08 -20.37 -0.69 -1.09 16 21 C 0.09 1.01 11.86 83.48 0.99 2.00 16 22 N -0.51 -6.11 6.00 -183.54 -1.10 -7.21 16 23 H 0.44 2.26 8.19 -92.71 -0.76 1.50 16 24 H 0.07 1.53 6.86 -2.39 -0.02 1.51 16 25 H 0.06 1.93 6.62 -2.39 -0.02 1.92 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.06 1.94 6.62 -2.39 -0.02 1.92 16 29 H 0.07 1.52 6.86 -2.39 -0.02 1.51 16 30 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 32 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 35 H 0.41 7.22 5.29 -92.71 -0.49 6.73 16 36 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 37 H 0.22 0.47 8.06 -2.91 -0.02 0.45 16 Total: -1.00 -71.79 327.66 2.62 -69.17 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -0.14 Total: 7.52 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 4.64 Total: -14.50 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -3.13 Total: -83.52 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.07 Total: -22.29 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -0.69 Total: -1.09 kcal Total: -71.79 2.62 -69.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554099556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.990 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds