Wall clock time and date at job start Tue Mar 31 2020 15:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21595 * 119.99599 * 0.02562 * 14 13 3 16 16 C 1.47533 * 120.00652 * 180.02562 * 14 13 3 17 17 C 1.39712 * 120.18081 * 359.97438 * 16 14 13 18 18 C 1.37902 * 119.89258 * 180.02562 * 17 16 14 19 19 Cl 1.73594 * 119.86213 * 180.02562 * 18 17 16 20 20 C 1.38645 * 120.27181 * 0.02562 * 18 17 16 21 21 C 1.38051 * 120.37645 * 359.97438 * 20 18 17 22 22 N 1.48018 * 119.94769 * 179.97438 * 21 20 18 23 23 O 1.21804 * 120.00048 * 359.97438 * 22 21 20 24 24 O 1.21805 * 120.00118 * 179.97438 * 22 21 20 25 25 C 1.38697 * 120.10406 * 359.71278 * 21 20 18 26 26 O 1.35664 * 120.14165 * 180.30093 * 25 21 20 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 34 34 H 1.07998 * 120.05631 * 359.97438 * 17 16 14 35 35 H 1.07999 * 119.80654 * 179.97438 * 20 18 17 36 36 H 0.96704 * 114.00629 * 270.28063 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6318 0.4319 16 6 0.0449 3.3246 2.6273 17 6 0.9341 3.3638 3.7042 18 6 0.5631 3.9819 4.8797 19 17 1.6688 4.0308 6.2170 20 6 -0.6895 4.5645 4.9979 21 6 -1.5769 4.5323 3.9409 22 7 -2.9119 5.1568 4.0776 23 8 -3.2270 5.6981 5.1222 24 8 -3.6955 5.1293 3.1454 25 6 -1.2175 3.9204 2.7492 26 8 -2.0867 3.8936 1.7079 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0604 -2.9502 33 1 2.2719 2.1232 1.9977 34 1 1.9102 2.9100 3.6164 35 1 -0.9725 5.0463 5.9221 36 1 -2.6702 3.1225 1.7023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563715399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:25 Heat of formation + Delta-G solvation = -59.920958 kcal Electronic energy + Delta-G solvation = -25697.493861 eV Core-core repulsion = 21597.536162 eV Total energy + Delta-G solvation = -4099.957699 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.44219 -40.67556 -38.71083 -37.82695 -36.80733 -36.40990 -35.23765 -33.13446 -32.19496 -31.03634 -30.39840 -27.24580 -26.79195 -24.56921 -23.10562 -22.83737 -21.07384 -19.80753 -19.50201 -18.94032 -18.59217 -17.73614 -17.47998 -16.79461 -16.45791 -15.77532 -15.53626 -15.29052 -14.79156 -14.50108 -13.93096 -13.69329 -13.36740 -13.05945 -12.80852 -12.31658 -11.89912 -11.88094 -11.72184 -11.65876 -11.56082 -11.38935 -11.27341 -11.12815 -11.03613 -10.93903 -10.47194 -10.35525 -10.07897 -9.79545 -9.43074 -9.30116 -9.22172 -8.64203 -8.09381 -6.25005 -4.35702 -0.55859 0.06028 0.91242 0.96491 1.50905 2.34412 3.17363 3.22250 3.23921 3.28008 3.45511 3.60046 4.05126 4.17562 4.19270 4.32492 4.41808 4.88830 4.96371 5.06971 5.17539 5.39051 5.52012 6.11866 6.23397 6.27490 6.47908 6.85426 7.00839 7.10657 7.20356 7.21153 7.43117 7.45273 7.54095 7.72326 8.01428 8.34938 8.56488 8.79459 9.31704 10.80218 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.003642 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.982043 B = 7686.869393 C = 9096.099031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.054 0.946 5 C -0.540 4.540 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.696 5.696 14 C 0.543 3.457 15 O -0.513 6.513 16 C -0.139 4.139 17 C -0.016 4.016 18 C -0.057 4.057 19 Cl -0.033 7.033 20 C -0.021 4.021 21 C -0.078 4.078 22 N 0.034 4.966 23 O -0.170 6.170 24 O -0.128 6.128 25 C 0.241 3.759 26 O -0.445 6.445 27 H 0.025 0.975 28 H 0.052 0.948 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.102 0.898 32 H 0.267 0.733 33 H 0.387 0.613 34 H 0.162 0.838 35 H 0.168 0.832 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.532 4.496 15.266 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.072 0.928 5 C -0.579 4.579 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.344 5.344 14 C 0.326 3.674 15 O -0.391 6.391 16 C -0.144 4.144 17 C -0.035 4.035 18 C -0.085 4.085 19 Cl -0.004 7.004 20 C -0.041 4.041 21 C -0.163 4.163 22 N 0.555 4.445 23 O -0.381 6.381 24 O -0.350 6.350 25 C 0.191 3.809 26 O -0.258 6.258 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.220 0.780 34 H 0.180 0.820 35 H 0.186 0.814 36 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -5.053 4.560 14.273 15.813 hybrid contribution 0.918 -0.223 0.639 1.140 sum -4.136 4.337 14.912 16.071 Atomic orbital electron populations 1.21851 0.98340 0.98288 1.01064 1.21957 0.92612 0.99552 1.02593 1.18907 0.94536 0.89234 0.80281 0.92828 1.21138 0.90383 1.39728 1.06614 0.92060 1.24868 0.98741 0.94589 0.95260 1.69868 1.35384 1.37132 1.09268 0.86497 0.84587 0.78404 0.77579 1.20105 1.21035 1.20116 1.46518 1.13756 1.55120 1.19005 1.17516 0.83912 0.80189 0.85733 1.90848 1.51001 1.58709 1.38517 1.20898 0.94107 1.02230 0.97166 1.21728 0.99951 0.92374 0.89494 1.20450 0.92265 1.04137 0.91621 1.98427 1.60739 1.97283 1.43945 1.20840 0.90293 0.94474 0.98468 1.21400 0.86771 1.10830 0.97294 1.43222 1.01878 0.99034 1.00359 1.94544 1.81438 1.44579 1.17526 1.94615 1.46329 1.62388 1.31661 1.18166 0.89968 0.88930 0.83859 1.84773 1.49790 1.49026 1.42191 0.95615 0.92887 0.94671 0.94881 0.87978 0.92317 0.77971 0.82043 0.81424 0.72530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.51 37.16 0.32 -2.46 16 2 C -0.13 -2.85 5.45 -26.73 -0.15 -2.99 16 3 C 0.27 6.22 2.24 -69.08 -0.15 6.06 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.21 8.73 -34.44 -0.30 -13.51 16 6 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.33 11.29 55.43 0.63 -22.70 16 9 Si 0.90 19.55 29.54 -169.99 -5.02 14.53 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.70 -12.59 4.97 -55.98 -0.28 -12.86 16 14 C 0.54 9.42 6.33 -12.47 -0.08 9.34 16 15 O -0.51 -10.51 12.29 -16.60 -0.20 -10.71 16 16 C -0.14 -1.84 5.89 -104.85 -0.62 -2.46 16 17 C -0.02 -0.16 9.31 -39.15 -0.36 -0.53 16 18 C -0.06 -0.53 6.31 -39.55 -0.25 -0.78 16 19 Cl -0.03 -0.27 28.94 -51.86 -1.50 -1.77 16 20 C -0.02 -0.20 9.32 -39.50 -0.37 -0.57 16 21 C -0.08 -0.93 6.86 -79.85 -0.55 -1.48 16 22 N 0.03 0.46 4.45 34.01 0.15 0.61 16 23 O -0.17 -2.26 18.44 -29.46 -0.54 -2.81 16 24 O -0.13 -1.84 17.24 -36.50 -0.63 -2.47 16 25 C 0.24 3.14 6.70 -38.70 -0.26 2.88 16 26 O -0.44 -6.20 9.58 -49.72 -0.48 -6.67 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 29 H 0.03 0.66 5.64 -51.93 -0.29 0.37 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.39 5.84 6.57 -40.82 -0.27 5.57 16 34 H 0.16 1.40 6.40 -52.49 -0.34 1.06 16 35 H 0.17 1.30 7.59 -52.49 -0.40 0.90 16 36 H 0.41 4.25 9.06 45.56 0.41 4.67 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -29.03 327.99 -8.18 -37.21 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -2.38 Total: 7.54 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.86 Total: -4.83 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.50 Total: -34.96 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.85 Total: -22.66 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.50 Total: -1.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.03 -8.18 -37.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563715399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.711 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds