Wall clock time and date at job start Tue Mar 31 2020 15:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21595 * 119.99599 * 0.02562 * 14 13 3 16 16 C 1.47533 * 120.00652 * 180.02562 * 14 13 3 17 17 C 1.39712 * 120.18081 * 359.97438 * 16 14 13 18 18 C 1.37902 * 119.89258 * 180.02562 * 17 16 14 19 19 Cl 1.73594 * 119.86213 * 180.02562 * 18 17 16 20 20 C 1.38645 * 120.27181 * 0.02562 * 18 17 16 21 21 C 1.38051 * 120.37645 * 359.97438 * 20 18 17 22 22 N 1.48018 * 119.94769 * 179.97438 * 21 20 18 23 23 O 1.21804 * 120.00048 * 359.97438 * 22 21 20 24 24 O 1.21805 * 120.00118 * 179.97438 * 22 21 20 25 25 C 1.38697 * 120.10406 * 359.71278 * 21 20 18 26 26 O 1.35664 * 120.14165 * 180.30093 * 25 21 20 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 34 34 H 1.07998 * 120.05631 * 359.97438 * 17 16 14 35 35 H 1.07999 * 119.80654 * 179.97438 * 20 18 17 36 36 H 0.96704 * 114.00629 * 270.28063 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6318 0.4319 16 6 0.0449 3.3246 2.6273 17 6 0.9341 3.3638 3.7042 18 6 0.5631 3.9819 4.8797 19 17 1.6688 4.0308 6.2170 20 6 -0.6895 4.5645 4.9979 21 6 -1.5769 4.5323 3.9409 22 7 -2.9119 5.1568 4.0776 23 8 -3.2270 5.6981 5.1222 24 8 -3.6955 5.1293 3.1454 25 6 -1.2175 3.9204 2.7492 26 8 -2.0867 3.8936 1.7079 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0604 -2.9502 33 1 2.2719 2.1232 1.9977 34 1 1.9102 2.9100 3.6164 35 1 -0.9725 5.0463 5.9221 36 1 -2.6702 3.1225 1.7023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563715399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:24 Heat of formation + Delta-G solvation = -77.220847 kcal Electronic energy + Delta-G solvation = -25698.244040 eV Core-core repulsion = 21597.536162 eV Total energy + Delta-G solvation = -4100.707879 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.44784 -41.78581 -40.02895 -38.75037 -37.72188 -37.34177 -36.91576 -34.55991 -33.68834 -32.48166 -31.44484 -28.99992 -27.78719 -25.86286 -24.70414 -23.82301 -22.41587 -21.39933 -20.71151 -19.99207 -19.58216 -18.91030 -18.73367 -17.89580 -17.65262 -17.11399 -16.90847 -16.56154 -16.15217 -16.04843 -15.12566 -14.83081 -14.59591 -14.21486 -14.13985 -13.84378 -13.48856 -13.16710 -12.93100 -12.84783 -12.77752 -12.68642 -12.64347 -12.33321 -12.31068 -12.21385 -12.08912 -12.04125 -11.58428 -11.07601 -11.02335 -10.88118 -10.52450 -10.19190 -9.71584 -8.16054 -6.33249 -1.51038 -0.87708 -0.06963 0.02247 0.71474 1.35951 1.47102 1.47815 1.55380 2.10336 2.22921 2.42921 2.50959 3.14078 3.16901 3.27681 3.34027 3.47514 3.87851 4.05811 4.27825 4.45534 4.50658 4.57649 4.58513 4.76223 5.06461 5.11073 5.26968 5.42311 5.49256 5.58945 5.78127 5.88116 6.16213 6.30684 6.39347 6.72569 6.82194 7.28324 7.43798 8.88837 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.003642 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.982043 B = 7686.869393 C = 9096.099031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.075 0.925 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.693 5.693 14 C 0.545 3.455 15 O -0.551 6.551 16 C -0.153 4.153 17 C 0.003 3.997 18 C -0.049 4.049 19 Cl -0.012 7.012 20 C 0.002 3.998 21 C -0.084 4.084 22 N 0.036 4.964 23 O -0.154 6.154 24 O -0.167 6.167 25 C 0.237 3.763 26 O -0.465 6.465 27 H 0.044 0.956 28 H 0.027 0.973 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.181 0.819 35 H 0.193 0.807 36 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 4.919 18.387 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.177 3.823 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.093 0.907 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.343 5.343 14 C 0.331 3.669 15 O -0.431 6.431 16 C -0.158 4.158 17 C -0.016 4.016 18 C -0.077 4.077 19 Cl 0.017 6.983 20 C -0.018 4.018 21 C -0.169 4.169 22 N 0.554 4.446 23 O -0.371 6.371 24 O -0.380 6.380 25 C 0.188 3.812 26 O -0.280 6.280 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.198 0.802 35 H 0.210 0.790 36 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -3.714 4.977 17.376 18.452 hybrid contribution 0.501 -0.293 -0.182 0.608 sum -3.214 4.683 17.194 18.108 Atomic orbital electron populations 1.21693 0.96894 0.99262 1.00351 1.21799 0.93829 0.98898 1.01579 1.18437 0.93765 0.89259 0.80804 0.97902 1.21539 0.91296 1.39112 1.06846 0.90668 1.25704 1.02974 0.94402 0.95083 1.70030 1.37067 1.38201 1.09805 0.85487 0.79484 0.78384 0.77533 1.18774 1.21567 1.19787 1.46173 1.14709 1.55339 1.18063 1.17948 0.82947 0.79319 0.86725 1.90833 1.51954 1.59911 1.40401 1.20330 0.95109 1.04146 0.96233 1.21863 0.99879 0.91173 0.88726 1.20374 0.92327 1.03237 0.91733 1.98449 1.59968 1.97129 1.42725 1.21139 0.89554 0.92746 0.98354 1.21331 0.86456 1.11478 0.97622 1.43378 1.02281 0.98834 1.00115 1.94515 1.81557 1.43775 1.17286 1.94634 1.47232 1.64027 1.32071 1.18244 0.89798 0.89119 0.84078 1.84730 1.50331 1.49910 1.43049 0.93656 0.95380 0.93579 0.93695 0.90983 0.92624 0.76003 0.80172 0.78966 0.71358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 8.51 71.98 0.61 -4.47 16 2 C -0.12 -5.51 5.45 30.60 0.17 -5.34 16 3 C 0.28 13.11 2.24 44.25 0.10 13.21 16 4 H 0.00 0.18 7.58 -2.39 -0.02 0.16 16 5 C -0.55 -26.83 8.73 25.60 0.22 -26.61 16 6 H 0.08 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.91 -49.81 11.29 21.45 0.24 -49.57 16 9 Si 0.97 39.82 29.54 68.60 2.03 41.84 16 10 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 13 N -0.69 -24.79 4.97 -449.28 -2.23 -27.02 16 14 C 0.54 18.90 6.33 86.69 0.55 19.44 16 15 O -0.55 -23.36 12.29 16.91 0.21 -23.15 16 16 C -0.15 -3.86 5.89 -20.01 -0.12 -3.98 16 17 C 0.00 0.05 9.31 22.55 0.21 0.26 16 18 C -0.05 -0.72 6.31 22.29 0.14 -0.58 16 19 Cl -0.01 -0.15 28.94 -2.72 -0.08 -0.23 16 20 C 0.00 0.03 9.32 22.32 0.21 0.23 16 21 C -0.08 -1.84 6.86 36.44 0.25 -1.59 16 22 N 0.04 0.91 4.45 -46.31 -0.21 0.71 16 23 O -0.15 -3.78 18.44 18.88 0.35 -3.44 16 24 O -0.17 -4.82 17.24 25.61 0.44 -4.38 16 25 C 0.24 6.02 6.70 22.84 0.15 6.18 16 26 O -0.47 -13.31 9.58 -60.14 -0.58 -13.88 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.03 1.25 7.84 -2.39 -0.02 1.23 16 29 H 0.05 1.75 5.64 -2.38 -0.01 1.74 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 3.72 5.95 -2.39 -0.01 3.71 16 32 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 33 H 0.40 11.45 6.57 -92.71 -0.61 10.85 16 34 H 0.18 2.47 6.40 -2.91 -0.02 2.45 16 35 H 0.19 2.11 7.59 -2.91 -0.02 2.09 16 36 H 0.42 9.24 9.06 -74.05 -0.67 8.57 16 Total: -1.00 -64.53 327.99 3.02 -61.51 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.10 Total: 19.44 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 2.94 Total: -1.83 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -2.20 Total: -75.88 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: 0.42 Total: -44.85 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.84 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -64.53 3.02 -61.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563715399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.706 kcal (2) G-P(sol) polarization free energy of solvation -64.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds