Wall clock time and date at job start Tue Mar 31 2020 15:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47174 * 2 1 4 4 H 1.09001 * 109.46848 * 54.99549 * 3 2 1 5 5 C 1.50695 * 109.47275 * 174.99864 * 3 2 1 6 6 H 1.08004 * 119.99541 * 119.99528 * 5 3 2 7 7 C 1.37875 * 119.99853 * 300.00257 * 5 3 2 8 8 N 1.31512 * 120.00523 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99689 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47206 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47298 * 120.00013 * 9 7 5 12 12 H 1.48505 * 109.47019 * 239.99572 * 9 7 5 13 13 N 1.46496 * 109.46773 * 295.00131 * 3 2 1 14 14 C 1.34782 * 120.00361 * 84.99791 * 13 3 2 15 15 O 1.21585 * 119.99583 * 0.02562 * 14 13 3 16 16 C 1.47531 * 120.00109 * 179.97438 * 14 13 3 17 17 C 1.39713 * 120.18813 * 0.02562 * 16 14 13 18 18 C 1.37889 * 119.89554 * 179.97438 * 17 16 14 19 19 Cl 1.73604 * 119.86117 * 180.02562 * 18 17 16 20 20 C 1.38637 * 120.27576 * 359.97426 * 18 17 16 21 21 C 1.38055 * 120.37536 * 0.02562 * 20 18 17 22 22 N 1.48028 * 119.94849 * 179.74534 * 21 20 18 23 23 O 1.21800 * 119.99958 * 359.97438 * 22 21 20 24 24 O 1.21795 * 120.00036 * 180.02562 * 22 21 20 25 25 C 1.38691 * 120.10036 * 0.02562 * 21 20 18 26 26 O 1.35673 * 120.13740 * 180.02562 * 25 21 20 27 27 H 1.08994 * 109.47219 * 60.00256 * 1 2 3 28 28 H 1.08999 * 109.46915 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47158 * 299.99698 * 1 2 3 30 30 H 1.08991 * 109.47332 * 239.99679 * 2 1 3 31 31 H 1.09007 * 109.46995 * 119.99637 * 2 1 3 32 32 H 0.96994 * 120.00225 * 180.02562 * 8 7 5 33 33 H 0.97004 * 120.00182 * 265.00120 * 13 3 2 34 34 H 1.08003 * 120.04820 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.81397 * 180.02562 * 20 18 17 36 36 H 0.96698 * 114.00038 * 90.00338 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8814 1.3818 10 1 6.5987 1.5464 0.1943 11 1 6.3990 1.6168 2.6103 12 1 6.4971 -0.5174 1.4630 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3412 2.6326 -0.4318 16 6 0.0450 3.3243 -2.6275 17 6 0.9342 3.3636 -3.7044 18 6 0.5631 3.9816 -4.8799 19 17 1.6685 4.0292 -6.2177 20 6 -0.6894 4.5641 -4.9982 21 6 -1.5769 4.5319 -3.9412 22 7 -2.9096 5.1618 -4.0759 23 8 -3.2223 5.7084 -5.1185 24 8 -3.6932 5.1344 -3.1438 25 6 -1.2195 3.9154 -2.7514 26 8 -2.0913 3.8829 -1.7123 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.8292 -0.0603 2.9502 33 1 2.2719 2.1231 -1.9978 34 1 1.9106 2.9105 -3.6163 35 1 -0.9724 5.0458 -5.9224 36 1 -2.6707 3.1087 -1.7092 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563715423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:27 Heat of formation + Delta-G solvation = -77.277781 kcal Electronic energy + Delta-G solvation = -25698.569127 eV Core-core repulsion = 21597.858779 eV Total energy + Delta-G solvation = -4100.710348 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.44788 -41.78662 -40.02956 -38.74925 -37.72173 -37.34181 -36.91768 -34.56062 -33.68881 -32.48137 -31.44522 -29.00310 -27.78610 -25.86496 -24.70636 -23.82159 -22.41628 -21.39943 -20.71174 -19.98915 -19.57785 -18.91301 -18.73509 -17.89641 -17.65605 -17.11831 -16.90754 -16.56082 -16.15156 -16.04332 -15.12461 -14.83146 -14.60638 -14.21367 -14.14097 -13.84475 -13.49489 -13.18098 -12.89732 -12.84445 -12.77815 -12.71827 -12.66904 -12.33226 -12.30916 -12.18345 -12.07321 -12.04117 -11.58943 -11.05461 -11.02248 -10.88378 -10.54138 -10.19136 -9.71515 -8.16520 -6.33484 -1.50950 -0.87673 -0.07047 0.02506 0.71489 1.36012 1.44866 1.47406 1.57513 2.10367 2.22877 2.42669 2.50960 3.13928 3.16932 3.27711 3.34079 3.47646 3.87874 4.05819 4.27889 4.45578 4.50658 4.57627 4.58582 4.76162 5.06469 5.11151 5.26986 5.42276 5.49257 5.59254 5.78069 5.88001 6.16141 6.30778 6.39500 6.72882 6.82176 7.28333 7.43721 8.88809 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014928 B = 0.003642 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.216827 B = 7686.936844 C = 9095.758150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.966 3.034 10 H -0.258 1.258 11 H -0.288 1.288 12 H -0.281 1.281 13 N -0.693 5.693 14 C 0.545 3.455 15 O -0.551 6.551 16 C -0.153 4.153 17 C 0.003 3.997 18 C -0.049 4.049 19 Cl -0.012 7.012 20 C 0.002 3.998 21 C -0.084 4.084 22 N 0.036 4.964 23 O -0.154 6.154 24 O -0.167 6.167 25 C 0.237 3.763 26 O -0.465 6.465 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.027 0.973 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.181 0.819 35 H 0.193 0.807 36 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.186 4.928 -18.427 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.177 3.823 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.791 3.209 10 H -0.182 1.182 11 H -0.214 1.214 12 H -0.206 1.206 13 N -0.343 5.343 14 C 0.331 3.669 15 O -0.431 6.431 16 C -0.158 4.158 17 C -0.016 4.016 18 C -0.077 4.077 19 Cl 0.017 6.983 20 C -0.018 4.018 21 C -0.169 4.169 22 N 0.554 4.446 23 O -0.371 6.371 24 O -0.379 6.379 25 C 0.188 3.812 26 O -0.280 6.280 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.198 0.802 35 H 0.210 0.790 36 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -3.735 4.990 -17.425 18.506 hybrid contribution 0.499 -0.315 0.206 0.625 sum -3.236 4.675 -17.219 18.134 Atomic orbital electron populations 1.21691 0.96894 0.99263 1.00352 1.21800 0.93834 0.98893 1.01584 1.18448 0.93798 0.89266 0.80813 0.97883 1.21594 0.91282 1.38905 1.06774 0.90653 1.25702 1.02958 0.94437 0.95110 1.70038 1.36925 1.38333 1.09846 0.85386 0.79542 0.77737 0.78206 1.18213 1.21411 1.20640 1.46177 1.14704 1.55352 1.18057 1.17945 0.82945 0.79313 0.86727 1.90831 1.51974 1.59902 1.40380 1.20329 0.95045 1.04227 0.96226 1.21860 0.99900 0.91156 0.88723 1.20369 0.92329 1.03241 0.91732 1.98450 1.60006 1.97135 1.42693 1.21139 0.89545 0.92765 0.98342 1.21331 0.86525 1.11361 0.97668 1.43376 1.02255 0.98868 1.00105 1.94514 1.81539 1.43611 1.17481 1.94632 1.47111 1.64216 1.31990 1.18243 0.89765 0.89153 0.84075 1.84732 1.50393 1.49705 1.43187 0.93573 0.93659 0.95382 0.93674 0.90996 0.92640 0.76004 0.80178 0.78966 0.71359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 8.51 71.98 0.61 -4.47 16 2 C -0.12 -5.51 5.45 30.60 0.17 -5.34 16 3 C 0.28 13.07 2.24 44.25 0.10 13.17 16 4 H 0.00 0.19 7.58 -2.39 -0.02 0.17 16 5 C -0.55 -26.69 8.73 25.60 0.22 -26.47 16 6 H 0.08 3.39 7.74 -2.91 -0.02 3.36 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -49.79 11.29 21.45 0.24 -49.55 16 9 Si 0.97 39.85 29.54 68.60 2.03 41.88 16 10 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 11 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 13 N -0.69 -24.76 4.97 -449.28 -2.23 -27.00 16 14 C 0.54 18.88 6.33 86.69 0.55 19.43 16 15 O -0.55 -23.34 12.29 16.94 0.21 -23.13 16 16 C -0.15 -3.86 5.89 -20.01 -0.12 -3.98 16 17 C 0.00 0.05 9.31 22.54 0.21 0.26 16 18 C -0.05 -0.72 6.31 22.28 0.14 -0.58 16 19 Cl -0.01 -0.15 28.94 -2.72 -0.08 -0.23 16 20 C 0.00 0.03 9.32 22.32 0.21 0.23 16 21 C -0.08 -1.84 6.86 36.44 0.25 -1.59 16 22 N 0.04 0.91 4.45 -46.30 -0.21 0.71 16 23 O -0.15 -3.79 18.44 18.89 0.35 -3.44 16 24 O -0.17 -4.82 17.24 25.62 0.44 -4.38 16 25 C 0.24 6.02 6.70 22.84 0.15 6.17 16 26 O -0.47 -13.29 9.59 -60.24 -0.58 -13.87 16 27 H 0.05 1.75 5.64 -2.39 -0.01 1.74 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.03 1.25 7.84 -2.39 -0.02 1.23 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 3.72 5.95 -2.38 -0.01 3.70 16 32 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 33 H 0.40 11.45 6.57 -92.71 -0.61 10.84 16 34 H 0.18 2.47 6.40 -2.91 -0.02 2.45 16 35 H 0.19 2.11 7.59 -2.91 -0.02 2.09 16 36 H 0.42 9.21 9.06 -74.06 -0.67 8.54 16 Total: -1.00 -64.60 327.99 3.02 -61.58 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -0.10 Total: 19.20 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 2.94 Total: -1.78 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -2.20 Total: -75.84 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: 0.42 Total: -44.82 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -64.60 3.02 -61.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563715423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.698 kcal (2) G-P(sol) polarization free energy of solvation -64.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds