Wall clock time and date at job start Tue Mar 31 2020 15:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46879 * 2 1 4 4 C 1.46499 * 120.00024 * 274.61839 * 3 2 1 5 5 C 1.50698 * 109.46848 * 269.99902 * 4 3 2 6 6 H 1.07997 * 120.00706 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99932 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00050 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00153 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46835 * 90.00207 * 9 7 5 11 11 H 1.48493 * 109.47343 * 210.00143 * 9 7 5 12 12 H 1.48497 * 109.47304 * 330.00386 * 9 7 5 13 13 C 1.34778 * 119.99509 * 94.61785 * 3 2 1 14 14 O 1.21588 * 120.00620 * 4.97755 * 13 3 2 15 15 C 1.47537 * 119.99441 * 184.97258 * 13 3 2 16 16 C 1.39717 * 120.18983 * 303.59884 * 15 13 3 17 17 C 1.37896 * 119.89449 * 180.29891 * 16 15 13 18 18 Cl 1.73601 * 119.85941 * 179.70814 * 17 16 15 19 19 C 1.38641 * 120.27550 * 359.68476 * 17 16 15 20 20 C 1.38048 * 120.37660 * 359.97438 * 19 17 16 21 21 N 1.48013 * 119.95199 * 180.02562 * 20 19 17 22 22 O 1.21805 * 119.99954 * 359.97438 * 21 20 19 23 23 O 1.21806 * 120.00419 * 179.97438 * 21 20 19 24 24 C 1.38706 * 120.09998 * 0.02677 * 20 19 17 25 25 O 1.35681 * 120.13787 * 180.02562 * 24 20 19 26 26 H 1.09000 * 109.46611 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47159 * 299.99752 * 1 2 3 28 28 H 1.08998 * 109.47251 * 60.00012 * 1 2 3 29 29 H 1.09001 * 109.47159 * 240.00248 * 2 1 3 30 30 H 1.08998 * 109.47251 * 119.99988 * 2 1 3 31 31 H 1.08997 * 109.47179 * 30.00212 * 4 3 2 32 32 H 1.09005 * 109.46840 * 150.00631 * 4 3 2 33 33 H 0.96996 * 120.00268 * 179.97438 * 8 7 5 34 34 H 1.08000 * 120.05076 * 0.02932 * 16 15 13 35 35 H 1.08000 * 119.81109 * 180.02562 * 19 17 16 36 36 H 0.96700 * 114.00066 * 89.99324 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1661 2.1059 -1.2646 5 6 3.5521 1.8824 -1.8125 6 1 4.2529 1.2629 -1.2727 7 6 3.9255 2.4688 -3.0032 8 7 3.0724 3.2236 -3.6605 9 14 5.6436 2.1923 -3.6822 10 1 5.6423 0.9940 -4.5593 11 1 6.0625 3.3805 -4.4680 12 1 6.5919 1.9824 -2.5588 13 6 2.3315 1.9852 1.1635 14 8 2.2956 1.3567 2.2037 15 6 2.7179 3.4090 1.1748 16 6 3.7873 3.8530 0.3929 17 6 4.1472 5.1840 0.4128 18 17 5.4809 5.7333 -0.5533 19 6 3.4481 6.0854 1.2007 20 6 2.3852 5.6603 1.9723 21 7 1.6450 6.6308 2.8096 22 8 1.9742 7.8035 2.8179 23 8 0.7068 6.2568 3.4904 24 6 2.0098 4.3250 1.9641 25 8 0.9650 3.9064 2.7217 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.4293 1.7416 -1.9804 32 1 2.0107 3.1711 -1.0932 33 1 3.3351 3.6364 -4.4980 34 1 4.3339 3.1540 -0.2228 35 1 3.7361 7.1262 1.2103 36 1 0.1111 3.9442 2.2694 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567051263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:41 Heat of formation + Delta-G solvation = -58.034680 kcal Electronic energy + Delta-G solvation = -26508.328281 eV Core-core repulsion = 22408.452377 eV Total energy + Delta-G solvation = -4099.875904 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.16139 -40.46512 -38.63888 -37.50460 -36.43273 -36.07025 -35.49014 -33.18062 -32.31865 -30.64601 -29.89859 -27.44522 -26.40007 -24.60414 -23.37907 -22.55578 -22.28833 -19.99223 -18.83597 -18.40138 -18.24830 -17.47704 -16.85349 -16.53932 -16.45280 -16.09402 -15.56117 -15.09123 -14.65641 -14.42524 -13.69657 -13.52428 -13.18669 -12.90338 -12.75776 -12.50775 -12.18294 -11.83072 -11.69366 -11.57945 -11.46745 -11.41899 -11.19171 -11.09175 -11.03610 -10.97187 -10.80748 -10.65911 -10.35692 -10.04339 -9.65153 -9.37743 -8.89826 -8.81517 -8.04908 -6.46182 -4.56212 -0.13417 0.52357 1.29207 1.35988 2.01276 2.78544 3.05616 3.14950 3.15990 3.17738 3.50944 3.68648 4.08910 4.42244 4.59596 4.70636 4.87452 4.96990 5.09649 5.29277 5.45791 5.59787 5.70355 5.74872 5.82071 6.09051 6.21063 6.22373 6.43331 6.43742 6.49169 6.86620 7.20514 7.29876 7.46696 7.73173 7.73978 7.95010 8.45031 8.61757 9.12305 10.59288 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.010406 B = 0.006343 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.154124 B = 4413.413314 C = 6465.765868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.585 5.585 4 C 0.231 3.769 5 C -0.556 4.556 6 H 0.066 0.934 7 C 0.077 3.923 8 N -0.875 5.875 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.564 3.436 14 O -0.541 6.541 15 C -0.133 4.133 16 C 0.013 3.987 17 C -0.052 4.052 18 Cl -0.034 7.034 19 C -0.025 4.025 20 C -0.083 4.083 21 N 0.040 4.960 22 O -0.175 6.175 23 O -0.140 6.140 24 C 0.220 3.780 25 O -0.459 6.459 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.270 0.730 34 H 0.193 0.807 35 H 0.164 0.836 36 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 2.211 4.163 4.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.316 5.316 4 C 0.112 3.888 5 C -0.593 4.593 6 H 0.084 0.916 7 C -0.129 4.129 8 N -0.511 5.511 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.349 3.651 14 O -0.420 6.420 15 C -0.137 4.137 16 C -0.006 4.006 17 C -0.080 4.080 18 Cl -0.005 7.005 19 C -0.045 4.045 20 C -0.167 4.167 21 N 0.559 4.441 22 O -0.386 6.386 23 O -0.360 6.360 24 C 0.171 3.829 25 O -0.271 6.271 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.210 0.790 35 H 0.182 0.818 36 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -0.226 1.502 4.424 4.677 hybrid contribution 0.467 0.416 -0.983 1.165 sum 0.241 1.918 3.441 3.947 Atomic orbital electron populations 1.22120 0.96458 1.01664 1.02012 1.21337 0.93627 0.82882 1.03134 1.48217 1.61895 1.13929 1.07528 1.19560 0.97870 0.92102 0.79301 1.21445 0.98184 1.32438 1.07262 0.91558 1.24906 0.97625 0.94289 0.96095 1.69892 1.35043 1.30278 1.15901 0.86650 0.84056 0.78317 0.79718 1.20164 1.20623 1.19227 1.17576 0.78119 0.85159 0.84203 1.90771 1.53924 1.65057 1.32253 1.20250 0.99285 0.95618 0.98575 1.22573 0.92590 0.95217 0.90227 1.20476 0.95198 0.93649 0.98700 1.98407 1.43283 1.89508 1.69327 1.20806 0.90820 1.01807 0.91080 1.21144 1.02007 0.88758 1.04824 1.43225 1.00079 1.01222 0.99590 1.94526 1.71858 1.00950 1.71236 1.94566 1.18961 1.83806 1.38669 1.18010 0.90191 0.87187 0.87502 1.84815 1.16838 1.86544 1.38863 0.92011 0.92848 0.92379 0.90046 0.90401 0.93954 0.94758 0.92044 0.79050 0.81807 0.73564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.83 6.21 -4.04 -0.03 1.80 16 3 N -0.59 -10.87 2.46 -176.29 -0.43 -11.30 16 4 C 0.23 4.76 4.73 -5.20 -0.02 4.74 16 5 C -0.56 -12.34 6.56 -34.44 -0.23 -12.57 16 6 H 0.07 1.50 7.76 -52.49 -0.41 1.09 16 7 C 0.08 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.88 -21.36 13.29 55.43 0.74 -20.63 16 9 Si 0.89 18.41 29.54 -169.99 -5.02 13.39 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 13 C 0.56 10.81 6.77 -12.47 -0.08 10.72 16 14 O -0.54 -11.56 16.36 4.63 0.08 -11.48 16 15 C -0.13 -2.34 4.64 -104.85 -0.49 -2.83 16 16 C 0.01 0.22 7.56 -39.15 -0.30 -0.08 16 17 C -0.05 -0.81 6.31 -39.56 -0.25 -1.06 16 18 Cl -0.03 -0.51 28.94 -51.86 -1.50 -2.01 16 19 C -0.03 -0.36 9.32 -39.50 -0.37 -0.73 16 20 C -0.08 -1.29 6.86 -79.85 -0.55 -1.84 16 21 N 0.04 0.65 4.45 34.01 0.15 0.80 16 22 O -0.17 -2.83 18.44 -29.46 -0.54 -3.37 16 23 O -0.14 -2.32 17.24 -36.50 -0.63 -2.95 16 24 C 0.22 3.60 6.69 -38.70 -0.26 3.34 16 25 O -0.46 -7.11 10.79 -43.09 -0.46 -7.57 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 30 H 0.08 1.28 7.23 -51.93 -0.38 0.90 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.03 0.74 6.14 -51.93 -0.32 0.42 16 33 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 34 H 0.19 3.63 5.20 -52.49 -0.27 3.36 16 35 H 0.16 2.01 7.59 -52.49 -0.40 1.61 16 36 H 0.40 4.51 9.06 45.56 0.41 4.92 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -26.56 336.07 -7.45 -34.01 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -2.60 Total: 4.76 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.28 Total: 1.30 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.45 Total: -31.13 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.56 Total: -25.38 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.56 -7.45 -34.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567051263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.024 kcal (2) G-P(sol) polarization free energy of solvation -26.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds