Wall clock time and date at job start Tue Mar 31 2020 15:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46879 * 2 1 4 4 C 1.46499 * 120.00024 * 274.61839 * 3 2 1 5 5 C 1.50698 * 109.46848 * 269.99902 * 4 3 2 6 6 H 1.07997 * 120.00706 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99932 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00050 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00153 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46835 * 90.00207 * 9 7 5 11 11 H 1.48493 * 109.47343 * 210.00143 * 9 7 5 12 12 H 1.48497 * 109.47304 * 330.00386 * 9 7 5 13 13 C 1.34778 * 119.99509 * 94.61785 * 3 2 1 14 14 O 1.21588 * 120.00620 * 4.97755 * 13 3 2 15 15 C 1.47537 * 119.99441 * 184.97258 * 13 3 2 16 16 C 1.39717 * 120.18983 * 303.59884 * 15 13 3 17 17 C 1.37896 * 119.89449 * 180.29891 * 16 15 13 18 18 Cl 1.73601 * 119.85941 * 179.70814 * 17 16 15 19 19 C 1.38641 * 120.27550 * 359.68476 * 17 16 15 20 20 C 1.38048 * 120.37660 * 359.97438 * 19 17 16 21 21 N 1.48013 * 119.95199 * 180.02562 * 20 19 17 22 22 O 1.21805 * 119.99954 * 359.97438 * 21 20 19 23 23 O 1.21806 * 120.00419 * 179.97438 * 21 20 19 24 24 C 1.38706 * 120.09998 * 0.02677 * 20 19 17 25 25 O 1.35681 * 120.13787 * 180.02562 * 24 20 19 26 26 H 1.09000 * 109.46611 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47159 * 299.99752 * 1 2 3 28 28 H 1.08998 * 109.47251 * 60.00012 * 1 2 3 29 29 H 1.09001 * 109.47159 * 240.00248 * 2 1 3 30 30 H 1.08998 * 109.47251 * 119.99988 * 2 1 3 31 31 H 1.08997 * 109.47179 * 30.00212 * 4 3 2 32 32 H 1.09005 * 109.46840 * 150.00631 * 4 3 2 33 33 H 0.96996 * 120.00268 * 179.97438 * 8 7 5 34 34 H 1.08000 * 120.05076 * 0.02932 * 16 15 13 35 35 H 1.08000 * 119.81109 * 180.02562 * 19 17 16 36 36 H 0.96700 * 114.00066 * 89.99324 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1661 2.1059 -1.2646 5 6 3.5521 1.8824 -1.8125 6 1 4.2529 1.2629 -1.2727 7 6 3.9255 2.4688 -3.0032 8 7 3.0724 3.2236 -3.6605 9 14 5.6436 2.1923 -3.6822 10 1 5.6423 0.9940 -4.5593 11 1 6.0625 3.3805 -4.4680 12 1 6.5919 1.9824 -2.5588 13 6 2.3315 1.9852 1.1635 14 8 2.2956 1.3567 2.2037 15 6 2.7179 3.4090 1.1748 16 6 3.7873 3.8530 0.3929 17 6 4.1472 5.1840 0.4128 18 17 5.4809 5.7333 -0.5533 19 6 3.4481 6.0854 1.2007 20 6 2.3852 5.6603 1.9723 21 7 1.6450 6.6308 2.8096 22 8 1.9742 7.8035 2.8179 23 8 0.7068 6.2568 3.4904 24 6 2.0098 4.3250 1.9641 25 8 0.9650 3.9064 2.7217 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.4293 1.7416 -1.9804 32 1 2.0107 3.1711 -1.0932 33 1 3.3351 3.6364 -4.4980 34 1 4.3339 3.1540 -0.2228 35 1 3.7361 7.1262 1.2103 36 1 0.1111 3.9442 2.2694 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567051263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:41 Heat of formation + Delta-G solvation = -71.553209 kcal Electronic energy + Delta-G solvation = -26508.914488 eV Core-core repulsion = 22408.452377 eV Total energy + Delta-G solvation = -4100.462112 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.44030 -41.83727 -40.05129 -38.74883 -37.69711 -37.34068 -37.02044 -34.82938 -33.70526 -31.95966 -31.21560 -29.10088 -27.69998 -25.92611 -25.05724 -23.83885 -23.59184 -21.32443 -20.11895 -19.74542 -19.60563 -18.76056 -18.53552 -18.00372 -17.84646 -17.41890 -16.93307 -16.46843 -16.21951 -15.88496 -15.05071 -14.77614 -14.52926 -14.37932 -14.18395 -13.95891 -13.56278 -13.27256 -13.16308 -12.86865 -12.76607 -12.75113 -12.66322 -12.62182 -12.32197 -12.27025 -12.21474 -12.01051 -11.84652 -11.73461 -11.12460 -10.80456 -10.58479 -10.13849 -9.60425 -8.24265 -6.37732 -1.41193 -0.74363 0.01198 0.06933 0.76544 1.38427 1.40262 1.47010 1.51503 1.81561 2.08265 2.38670 2.44384 3.06468 3.08263 3.35384 3.47936 3.64933 3.77403 4.07387 4.20909 4.36900 4.45042 4.53520 4.56589 4.76110 4.84731 4.94128 5.03787 5.12803 5.16325 5.31278 5.60216 5.73931 5.98560 6.22782 6.38319 6.45146 6.72471 7.06522 7.33803 8.80682 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.010406 B = 0.006343 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.154124 B = 4413.413314 C = 6465.765868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.106 3.894 3 N -0.585 5.585 4 C 0.247 3.753 5 C -0.551 4.551 6 H 0.060 0.940 7 C 0.047 3.953 8 N -0.902 5.902 9 Si 0.927 3.073 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.263 1.263 13 C 0.565 3.435 14 O -0.567 6.567 15 C -0.150 4.150 16 C 0.008 3.992 17 C -0.054 4.054 18 Cl -0.026 7.026 19 C -0.006 4.006 20 C -0.085 4.085 21 N 0.040 4.960 22 O -0.165 6.165 23 O -0.153 6.153 24 C 0.227 3.773 25 O -0.468 6.468 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.269 0.731 34 H 0.176 0.824 35 H 0.191 0.809 36 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 2.763 4.300 5.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.016 4.016 3 N -0.314 5.314 4 C 0.127 3.873 5 C -0.589 4.589 6 H 0.078 0.922 7 C -0.157 4.157 8 N -0.540 5.540 9 Si 0.753 3.247 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.187 1.187 13 C 0.352 3.648 14 O -0.448 6.448 15 C -0.154 4.154 16 C -0.011 4.011 17 C -0.081 4.081 18 Cl 0.003 6.997 19 C -0.026 4.026 20 C -0.170 4.170 21 N 0.559 4.441 22 O -0.379 6.379 23 O -0.370 6.370 24 C 0.178 3.822 25 O -0.282 6.282 26 H 0.107 0.893 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.193 0.807 35 H 0.208 0.792 36 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -0.059 2.019 4.566 4.993 hybrid contribution 0.404 0.259 -0.994 1.104 sum 0.345 2.278 3.572 4.251 Atomic orbital electron populations 1.22035 0.94347 1.03327 1.01522 1.21535 0.95385 0.81621 1.03057 1.48240 1.61689 1.14705 1.06796 1.19237 0.96687 0.91776 0.79642 1.21537 0.98659 1.31677 1.06997 0.92170 1.25353 0.99717 0.94214 0.96379 1.69960 1.36258 1.31432 1.16307 0.86003 0.81567 0.77937 0.79224 1.20364 1.20680 1.18676 1.17749 0.77542 0.85728 0.83804 1.90748 1.55238 1.65879 1.32927 1.20125 1.00206 0.95095 0.99998 1.22356 0.92580 0.95794 0.90384 1.20424 0.95585 0.93107 0.99013 1.98411 1.42870 1.89284 1.69161 1.21019 0.89456 1.02736 0.89346 1.21158 1.02337 0.88450 1.05071 1.43245 1.00053 1.01241 0.99561 1.94518 1.71587 1.00928 1.70878 1.94576 1.19353 1.83876 1.39174 1.17963 0.90184 0.87276 0.86782 1.84767 1.17676 1.86568 1.39225 0.89315 0.93349 0.92721 0.89839 0.90686 0.95250 0.95481 0.92153 0.80724 0.79226 0.71532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 10.24 71.98 0.74 -3.31 16 2 C 0.11 3.37 6.21 86.38 0.54 3.91 16 3 N -0.58 -21.66 2.46 -829.91 -2.04 -23.70 16 4 C 0.25 10.18 4.73 85.63 0.41 10.58 16 5 C -0.55 -24.38 6.56 25.60 0.17 -24.21 16 6 H 0.06 2.71 7.76 -2.91 -0.02 2.69 16 7 C 0.05 2.14 5.46 84.66 0.46 2.60 16 8 N -0.90 -43.81 13.29 21.45 0.28 -43.53 16 9 Si 0.93 37.07 29.54 68.60 2.03 39.10 16 10 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 12 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 13 C 0.56 21.63 6.77 86.70 0.59 22.21 16 14 O -0.57 -24.21 16.36 -3.36 -0.05 -24.27 16 15 C -0.15 -5.22 4.64 -20.01 -0.09 -5.31 16 16 C 0.01 0.27 7.56 22.55 0.17 0.44 16 17 C -0.05 -1.59 6.31 22.28 0.14 -1.45 16 18 Cl -0.03 -0.75 28.94 -2.72 -0.08 -0.82 16 19 C -0.01 -0.16 9.32 22.32 0.21 0.05 16 20 C -0.09 -2.52 6.86 36.44 0.25 -2.27 16 21 N 0.04 1.23 4.45 -46.31 -0.21 1.03 16 22 O -0.17 -4.95 18.44 18.88 0.35 -4.60 16 23 O -0.15 -4.85 17.24 25.60 0.44 -4.41 16 24 C 0.23 7.21 6.69 22.84 0.15 7.36 16 25 O -0.47 -14.06 10.79 -66.71 -0.72 -14.78 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 30 H 0.07 2.44 7.23 -2.39 -0.02 2.42 16 31 H 0.03 1.29 8.07 -2.39 -0.02 1.27 16 32 H 0.03 1.17 6.14 -2.38 -0.01 1.15 16 33 H 0.27 12.63 8.31 -92.71 -0.77 11.86 16 34 H 0.18 6.62 5.20 -2.91 -0.02 6.60 16 35 H 0.19 4.04 7.59 -2.91 -0.02 4.01 16 36 H 0.42 9.00 9.06 -74.06 -0.67 8.33 16 Total: -1.00 -54.58 336.07 4.22 -50.36 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.49 Total: 15.02 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 3.73 Total: 10.60 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -1.96 Total: -66.20 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: 0.01 Total: -48.06 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.82 kcal Total: -54.58 4.22 -50.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567051263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.196 kcal (2) G-P(sol) polarization free energy of solvation -54.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds