Wall clock time and date at job start Tue Mar 31 2020 15:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47325 * 2 1 4 4 C 1.50699 * 109.47173 * 240.00463 * 2 1 3 5 5 H 1.08000 * 119.99553 * 239.99921 * 4 2 1 6 6 C 1.37873 * 120.00304 * 59.99987 * 4 2 1 7 7 N 1.31514 * 119.99831 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00108 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47091 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47195 * 119.99530 * 8 6 4 11 11 H 1.48495 * 109.46793 * 239.99350 * 8 6 4 12 12 N 1.46498 * 109.47539 * 120.00097 * 2 1 3 13 13 C 1.46500 * 119.99759 * 59.99898 * 12 2 1 14 14 C 1.34774 * 120.00357 * 240.00022 * 12 2 1 15 15 O 1.21596 * 120.00104 * 4.45925 * 14 12 2 16 16 C 1.47531 * 120.00352 * 184.45611 * 14 12 2 17 17 C 1.39711 * 120.18626 * 310.83309 * 16 14 12 18 18 C 1.37894 * 119.89656 * 179.97438 * 17 16 14 19 19 Cl 1.73601 * 119.86411 * 180.02562 * 18 17 16 20 20 C 1.38646 * 120.27308 * 359.97438 * 18 17 16 21 21 C 1.38056 * 120.37467 * 0.02562 * 20 18 17 22 22 N 1.48024 * 119.94456 * 179.74421 * 21 20 18 23 23 O 1.21795 * 120.00020 * 359.97438 * 22 21 20 24 24 O 1.21800 * 119.99495 * 180.02562 * 22 21 20 25 25 C 1.38689 * 120.10144 * 0.02562 * 21 20 18 26 26 O 1.35675 * 120.14109 * 179.97438 * 25 21 20 27 27 H 1.08998 * 109.47239 * 59.99307 * 1 2 3 28 28 H 1.08999 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46867 * 299.99666 * 1 2 3 30 30 H 0.96999 * 120.00210 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47243 * 272.93060 * 13 12 2 32 32 H 1.08996 * 109.47326 * 32.93625 * 13 12 2 33 33 H 1.09001 * 109.47182 * 152.93547 * 13 12 2 34 34 H 1.07999 * 120.05409 * 359.97438 * 17 16 14 35 35 H 1.07993 * 119.81287 * 180.02562 * 20 18 17 36 36 H 0.96701 * 113.99908 * 89.99776 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3214 -1.1201 -4.0080 9 1 3.1465 -2.2868 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0203 1.1495 1.9337 16 6 3.3660 -0.7566 3.2360 17 6 2.5514 -1.5614 4.0364 18 6 3.0931 -2.2330 5.1121 19 17 2.0803 -3.2334 6.1057 20 6 4.4435 -2.1135 5.4027 21 6 5.2587 -1.3213 4.6193 22 7 6.6980 -1.1960 4.9416 23 8 7.1620 -1.7912 5.8975 24 8 7.4179 -0.4969 4.2513 25 6 4.7300 -0.6380 3.5343 26 8 5.5303 0.1411 2.7641 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7081 1.1610 -3.4843 31 1 0.7112 -2.1453 1.9539 32 1 1.5806 -2.6096 0.4717 33 1 2.4384 -2.5684 2.0307 34 1 1.4992 -1.6575 3.8131 35 1 4.8600 -2.6431 6.2467 36 1 5.9357 -0.3254 2.0204 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570163103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:32 Heat of formation + Delta-G solvation = -46.263261 kcal Electronic energy + Delta-G solvation = -25936.006728 eV Core-core repulsion = 21836.641271 eV Total energy + Delta-G solvation = -4099.365457 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.42552 -40.73949 -38.72416 -37.86483 -36.79533 -36.41450 -35.58029 -33.38831 -32.28659 -30.66186 -29.36954 -26.95771 -26.39569 -25.39493 -24.49640 -22.90230 -21.56915 -19.99211 -19.02446 -18.68108 -18.44428 -17.72201 -16.91609 -16.74159 -16.49486 -16.37267 -15.62142 -15.32454 -14.66014 -14.34583 -13.95330 -13.58274 -13.52276 -13.05575 -12.70204 -12.51164 -12.03188 -11.87935 -11.78717 -11.69956 -11.68066 -11.57952 -11.24714 -11.20502 -11.01883 -10.97735 -10.89625 -10.40918 -10.32760 -10.00088 -9.47192 -9.36766 -9.25192 -8.58185 -7.89998 -6.22147 -4.31614 -0.52892 0.12168 0.94469 0.99117 1.50262 2.42294 3.03094 3.16659 3.25795 3.27088 3.36440 3.47263 4.08065 4.14468 4.20054 4.27653 4.47879 4.79384 4.91333 5.09937 5.20521 5.29814 5.36606 5.50858 5.70687 6.10966 6.14168 6.57638 6.63940 6.86243 7.11822 7.16390 7.29617 7.47968 7.53847 7.81875 7.98604 8.21013 8.53712 8.74706 9.35625 10.83234 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.003882 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.350597 B = 7211.596709 C = 8325.588616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.067 0.933 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.579 5.579 13 C 0.073 3.927 14 C 0.547 3.453 15 O -0.515 6.515 16 C -0.129 4.129 17 C -0.017 4.017 18 C -0.056 4.056 19 Cl -0.034 7.034 20 C -0.024 4.024 21 C -0.074 4.074 22 N 0.034 4.966 23 O -0.169 6.169 24 O -0.128 6.128 25 C 0.232 3.768 26 O -0.452 6.452 27 H 0.096 0.904 28 H 0.031 0.969 29 H 0.013 0.987 30 H 0.265 0.735 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.164 0.836 35 H 0.168 0.832 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 -9.728 14.405 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.310 5.310 13 C -0.071 4.071 14 C 0.331 3.669 15 O -0.391 6.391 16 C -0.134 4.134 17 C -0.036 4.036 18 C -0.084 4.084 19 Cl -0.005 7.005 20 C -0.044 4.044 21 C -0.159 4.159 22 N 0.555 4.445 23 O -0.380 6.380 24 O -0.350 6.350 25 C 0.183 3.817 26 O -0.265 6.265 27 H 0.114 0.886 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.181 0.819 35 H 0.186 0.814 36 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 1.376 -8.707 14.462 16.937 hybrid contribution 0.643 -1.001 -0.942 1.518 sum 2.019 -9.708 13.520 16.767 Atomic orbital electron populations 1.22095 0.97760 0.99595 1.01118 1.19078 0.91203 0.94555 0.79235 0.91567 1.21278 1.32397 1.13252 0.90098 0.92121 1.24883 0.94767 0.94902 0.99028 1.69876 1.35907 1.22415 1.23953 0.86419 0.78660 0.79553 0.82637 1.19824 1.20829 1.20772 1.48278 1.47880 1.11678 1.23194 1.21869 0.98745 0.83300 1.03158 1.17604 0.80607 0.86910 0.81825 1.90851 1.59755 1.14272 1.74270 1.20709 0.92776 1.00036 0.99905 1.21733 1.01830 0.89994 0.90065 1.20433 0.91191 1.00367 0.96418 1.98421 1.67035 1.67037 1.67988 1.20814 0.91225 0.94095 0.98228 1.21339 0.82510 1.08479 1.03525 1.43215 1.02337 0.99006 0.99928 1.94538 1.77313 1.46307 1.19873 1.94618 1.56734 1.35382 1.48257 1.18092 0.89241 0.85398 0.88986 1.84827 1.62719 1.35170 1.43756 0.88562 0.94988 0.96836 0.92513 0.93117 0.89388 0.92848 0.81868 0.81415 0.72647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.97 37.16 0.33 -2.91 16 2 C 0.26 6.05 2.63 -69.09 -0.18 5.87 16 3 H 0.07 1.82 6.91 -51.93 -0.36 1.47 16 4 C -0.53 -13.23 8.01 -34.44 -0.28 -13.51 16 5 H 0.06 1.47 7.28 -52.49 -0.38 1.09 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -23.68 11.32 55.43 0.63 -23.05 16 8 Si 0.90 19.87 29.54 -169.99 -5.02 14.84 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 N -0.58 -10.92 2.75 -176.50 -0.49 -11.40 16 13 C 0.07 1.04 8.11 59.85 0.49 1.52 16 14 C 0.55 10.23 6.95 -12.47 -0.09 10.14 16 15 O -0.51 -11.93 15.88 -3.91 -0.06 -12.00 16 16 C -0.13 -1.82 4.90 -104.85 -0.51 -2.34 16 17 C -0.02 -0.18 7.38 -39.16 -0.29 -0.47 16 18 C -0.06 -0.53 6.31 -39.56 -0.25 -0.78 16 19 Cl -0.03 -0.27 28.94 -51.86 -1.50 -1.77 16 20 C -0.02 -0.23 9.32 -39.50 -0.37 -0.60 16 21 C -0.07 -0.91 6.86 -79.84 -0.55 -1.46 16 22 N 0.03 0.47 4.45 34.01 0.15 0.63 16 23 O -0.17 -2.31 18.43 -29.46 -0.54 -2.85 16 24 O -0.13 -1.92 17.24 -36.50 -0.63 -2.54 16 25 C 0.23 3.21 6.67 -38.71 -0.26 2.95 16 26 O -0.45 -6.68 10.56 -45.95 -0.49 -7.16 16 27 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.05 0.61 7.56 -51.93 -0.39 0.21 16 32 H 0.09 1.35 6.98 -51.93 -0.36 0.99 16 33 H 0.05 0.61 5.68 -51.93 -0.30 0.32 16 34 H 0.16 1.53 6.58 -52.49 -0.35 1.18 16 35 H 0.17 1.33 7.59 -52.49 -0.40 0.93 16 36 H 0.41 4.46 9.06 45.56 0.41 4.87 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -30.48 329.70 -7.42 -37.90 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -2.39 Total: 2.40 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.05 Total: 0.05 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.29 Total: -33.83 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -1.72 Total: -24.56 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.50 Total: -1.77 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.48 -7.42 -37.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570163103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.360 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds