Wall clock time and date at job start Tue Mar 31 2020 15:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47325 * 2 1 4 4 C 1.50699 * 109.47173 * 240.00463 * 2 1 3 5 5 H 1.08000 * 119.99553 * 239.99921 * 4 2 1 6 6 C 1.37873 * 120.00304 * 59.99987 * 4 2 1 7 7 N 1.31514 * 119.99831 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00108 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47091 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47195 * 119.99530 * 8 6 4 11 11 H 1.48495 * 109.46793 * 239.99350 * 8 6 4 12 12 N 1.46498 * 109.47539 * 120.00097 * 2 1 3 13 13 C 1.46500 * 119.99759 * 59.99898 * 12 2 1 14 14 C 1.34774 * 120.00357 * 240.00022 * 12 2 1 15 15 O 1.21596 * 120.00104 * 4.45925 * 14 12 2 16 16 C 1.47531 * 120.00352 * 184.45611 * 14 12 2 17 17 C 1.39711 * 120.18626 * 310.83309 * 16 14 12 18 18 C 1.37894 * 119.89656 * 179.97438 * 17 16 14 19 19 Cl 1.73601 * 119.86411 * 180.02562 * 18 17 16 20 20 C 1.38646 * 120.27308 * 359.97438 * 18 17 16 21 21 C 1.38056 * 120.37467 * 0.02562 * 20 18 17 22 22 N 1.48024 * 119.94456 * 179.74421 * 21 20 18 23 23 O 1.21795 * 120.00020 * 359.97438 * 22 21 20 24 24 O 1.21800 * 119.99495 * 180.02562 * 22 21 20 25 25 C 1.38689 * 120.10144 * 0.02562 * 21 20 18 26 26 O 1.35675 * 120.14109 * 179.97438 * 25 21 20 27 27 H 1.08998 * 109.47239 * 59.99307 * 1 2 3 28 28 H 1.08999 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46867 * 299.99666 * 1 2 3 30 30 H 0.96999 * 120.00210 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47243 * 272.93060 * 13 12 2 32 32 H 1.08996 * 109.47326 * 32.93625 * 13 12 2 33 33 H 1.09001 * 109.47182 * 152.93547 * 13 12 2 34 34 H 1.07999 * 120.05409 * 359.97438 * 17 16 14 35 35 H 1.07993 * 119.81287 * 180.02562 * 20 18 17 36 36 H 0.96701 * 113.99908 * 89.99776 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3214 -1.1201 -4.0080 9 1 3.1465 -2.2868 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0203 1.1495 1.9337 16 6 3.3660 -0.7566 3.2360 17 6 2.5514 -1.5614 4.0364 18 6 3.0931 -2.2330 5.1121 19 17 2.0803 -3.2334 6.1057 20 6 4.4435 -2.1135 5.4027 21 6 5.2587 -1.3213 4.6193 22 7 6.6980 -1.1960 4.9416 23 8 7.1620 -1.7912 5.8975 24 8 7.4179 -0.4969 4.2513 25 6 4.7300 -0.6380 3.5343 26 8 5.5303 0.1411 2.7641 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7081 1.1610 -3.4843 31 1 0.7112 -2.1453 1.9539 32 1 1.5806 -2.6096 0.4717 33 1 2.4384 -2.5684 2.0307 34 1 1.4992 -1.6575 3.8131 35 1 4.8600 -2.6431 6.2467 36 1 5.9357 -0.3254 2.0204 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570163103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:31 Heat of formation + Delta-G solvation = -64.908277 kcal Electronic energy + Delta-G solvation = -25936.815236 eV Core-core repulsion = 21836.641271 eV Total energy + Delta-G solvation = -4100.173966 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.46698 -41.89380 -40.07023 -38.81688 -37.72760 -37.39728 -37.19620 -35.01588 -33.56168 -31.76655 -30.94627 -28.07323 -27.58420 -27.31874 -25.71266 -23.87559 -23.03391 -21.28185 -20.11180 -19.79491 -19.65575 -18.76456 -18.52250 -18.03541 -17.70634 -17.47243 -17.14455 -16.38693 -16.27094 -15.79817 -15.04771 -14.74494 -14.59718 -14.39797 -14.11565 -13.84167 -13.57876 -13.12738 -12.96086 -12.87017 -12.79524 -12.73863 -12.70740 -12.65457 -12.34144 -12.32339 -12.21933 -12.13233 -12.07926 -11.22841 -11.11150 -10.83492 -10.53776 -10.20322 -9.47335 -8.16749 -6.33108 -1.51642 -0.83464 -0.06584 0.01190 0.68717 1.35980 1.41249 1.44303 1.53600 1.77945 2.08898 2.38272 2.43584 3.02536 3.12958 3.26111 3.29832 3.49548 3.73852 4.00812 4.25592 4.30130 4.39268 4.56749 4.64841 4.75886 4.89407 4.96679 5.02864 5.09866 5.45127 5.49383 5.63443 5.98316 6.12453 6.20538 6.38505 6.60565 6.73685 7.12061 7.39327 8.87991 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.003882 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.350597 B = 7211.596709 C = 8325.588616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.263 3.737 3 H 0.012 0.988 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.962 3.038 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.288 1.288 12 N -0.583 5.583 13 C 0.067 3.933 14 C 0.546 3.454 15 O -0.574 6.574 16 C -0.145 4.145 17 C 0.001 3.999 18 C -0.044 4.044 19 Cl -0.008 7.008 20 C -0.001 4.001 21 C -0.079 4.079 22 N 0.036 4.964 23 O -0.147 6.147 24 O -0.173 6.173 25 C 0.225 3.775 26 O -0.475 6.475 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.023 0.977 30 H 0.264 0.736 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.183 0.817 35 H 0.195 0.805 36 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -12.950 16.371 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.030 0.970 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.215 1.215 12 N -0.313 5.313 13 C -0.075 4.075 14 C 0.333 3.667 15 O -0.454 6.454 16 C -0.149 4.149 17 C -0.018 4.018 18 C -0.072 4.072 19 Cl 0.022 6.978 20 C -0.020 4.020 21 C -0.163 4.163 22 N 0.554 4.446 23 O -0.366 6.366 24 O -0.384 6.384 25 C 0.176 3.824 26 O -0.290 6.290 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.200 0.800 35 H 0.213 0.787 36 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 0.855 -11.929 16.378 20.280 hybrid contribution 0.767 -0.099 -1.381 1.582 sum 1.621 -12.029 14.998 19.294 Atomic orbital electron populations 1.21883 0.96659 1.00496 1.00193 1.18639 0.91979 0.92276 0.80974 0.96987 1.21555 1.32053 1.13162 0.90800 0.91693 1.25678 0.95022 0.95546 1.01926 1.70020 1.37149 1.23823 1.24433 0.85441 0.78176 0.78511 0.79083 1.18737 1.20168 1.21459 1.48178 1.47820 1.13416 1.21876 1.22165 1.01355 0.80342 1.03624 1.18124 0.79622 0.86388 0.82558 1.90815 1.61560 1.17035 1.76022 1.20145 0.93170 1.02081 0.99545 1.21859 1.02208 0.88321 0.89397 1.20345 0.91148 0.99838 0.95879 1.98448 1.66249 1.66077 1.67075 1.21142 0.91016 0.92203 0.97650 1.21268 0.81827 1.09453 1.03800 1.43374 1.02877 0.98669 0.99691 1.94503 1.77638 1.45195 1.19275 1.94642 1.57496 1.37073 1.49227 1.18193 0.89150 0.85674 0.89429 1.84789 1.63165 1.36509 1.44559 0.91404 0.92957 0.95835 0.92627 0.90067 0.90447 0.89774 0.79960 0.78747 0.71488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.97 71.98 0.65 -5.29 16 2 C 0.26 12.65 2.63 44.24 0.12 12.77 16 3 H 0.01 0.71 6.91 -2.39 -0.02 0.70 16 4 C -0.54 -27.09 8.01 25.60 0.21 -26.89 16 5 H 0.06 3.14 7.28 -2.91 -0.02 3.12 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.92 -50.56 11.32 21.45 0.24 -50.32 16 8 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 10 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 12 N -0.58 -21.90 2.75 -830.57 -2.29 -24.18 16 13 C 0.07 1.73 8.11 127.77 1.04 2.77 16 14 C 0.55 20.79 6.95 86.69 0.60 21.39 16 15 O -0.57 -28.12 15.88 4.77 0.08 -28.04 16 16 C -0.14 -3.91 4.90 -20.01 -0.10 -4.01 16 17 C 0.00 0.02 7.38 22.54 0.17 0.19 16 18 C -0.04 -0.64 6.31 22.29 0.14 -0.50 16 19 Cl -0.01 -0.09 28.94 -2.72 -0.08 -0.17 16 20 C 0.00 -0.01 9.32 22.32 0.21 0.20 16 21 C -0.08 -1.79 6.86 36.44 0.25 -1.54 16 22 N 0.04 0.94 4.45 -46.30 -0.21 0.74 16 23 O -0.15 -3.67 18.43 18.89 0.35 -3.32 16 24 O -0.17 -5.26 17.24 25.61 0.44 -4.82 16 25 C 0.22 6.10 6.67 22.84 0.15 6.26 16 26 O -0.48 -14.72 10.56 -63.89 -0.67 -15.39 16 27 H 0.07 3.43 6.07 -2.39 -0.01 3.41 16 28 H 0.05 2.05 7.67 -2.39 -0.02 2.03 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.08 1.62 7.56 -2.38 -0.02 1.60 16 32 H 0.08 2.21 6.98 -2.39 -0.02 2.19 16 33 H 0.08 1.65 5.68 -2.39 -0.01 1.63 16 34 H 0.18 2.63 6.58 -2.91 -0.02 2.61 16 35 H 0.20 2.09 7.59 -2.91 -0.02 2.07 16 36 H 0.42 9.92 9.06 -74.06 -0.67 9.25 16 Total: -1.00 -69.83 329.70 4.26 -65.57 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.50 Total: 10.23 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 3.87 Total: 6.72 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -2.25 Total: -73.77 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: 0.19 Total: -51.57 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Total: -69.83 4.26 -65.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570163103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.661 kcal (2) G-P(sol) polarization free energy of solvation -69.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds