Wall clock time and date at job start Tue Mar 31 2020 15:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47466 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.46914 * 30.00417 * 3 2 1 6 6 H 1.48507 * 109.46739 * 150.00133 * 3 2 1 7 7 C 1.37880 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00025 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99753 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46827 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.46960 * 180.02562 * 10 9 7 12 12 C 1.81408 * 102.99810 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46846 * 180.02562 * 12 11 10 14 14 C 1.38254 * 119.88794 * 90.00165 * 13 12 11 15 15 C 1.38443 * 120.20752 * 179.97438 * 14 13 12 16 16 Cl 1.73598 * 120.15173 * 180.02562 * 15 14 13 17 17 C 1.38562 * 119.69077 * 0.02562 * 15 14 13 18 18 C 1.38709 * 120.05804 * 359.97438 * 17 15 14 19 19 C 1.38325 * 119.89093 * 269.72246 * 13 12 11 20 20 O 1.36460 * 119.61632 * 179.97438 * 18 17 15 21 21 C 1.42903 * 115.92459 * 68.29918 * 20 18 17 22 22 C 1.52066 * 110.76580 * 275.57665 * 21 20 18 23 23 C 1.52072 * 112.37029 * 64.80873 * 22 21 20 24 24 O 1.36492 * 120.32424 * 179.97438 * 17 15 14 25 25 H 0.97003 * 120.00374 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46758 * 60.00594 * 9 7 2 27 27 H 1.08997 * 109.47547 * 299.99923 * 9 7 2 28 28 H 1.09005 * 109.46565 * 60.00353 * 10 9 7 29 29 H 1.08997 * 109.47094 * 300.00322 * 10 9 7 30 30 H 1.09000 * 109.46602 * 60.00357 * 12 11 10 31 31 H 1.09000 * 109.47286 * 300.00088 * 12 11 10 32 32 H 1.07998 * 119.89856 * 359.96363 * 14 13 12 33 33 H 1.08008 * 120.13069 * 0.02562 * 19 13 12 34 34 H 1.09000 * 109.21761 * 35.91343 * 21 20 18 35 35 H 1.09001 * 109.22359 * 155.29152 * 21 20 18 36 36 H 1.09001 * 108.90094 * 185.54923 * 22 21 20 37 37 H 1.08998 * 108.90583 * 304.15907 * 22 21 20 38 38 H 1.08995 * 109.21809 * 55.52627 * 23 22 21 39 39 H 1.09002 * 109.21105 * 174.90526 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 16 5.8355 -2.6364 -0.0009 12 6 6.2436 -4.4040 -0.0016 13 6 7.7411 -4.5738 -0.0010 14 6 8.4251 -4.6520 1.1980 15 6 9.8006 -4.8085 1.2063 16 17 10.6579 -4.9072 2.7126 17 6 10.4898 -4.8859 0.0067 18 6 9.8026 -4.8073 -1.1956 19 6 8.4260 -4.6566 -1.1999 20 8 10.4905 -4.8841 -2.3717 21 6 11.0783 -6.1520 -2.6701 22 6 12.4349 -6.2891 -1.9970 23 6 12.3304 -6.2950 -0.4799 24 8 11.8460 -5.0397 -0.0002 25 1 -0.4851 0.8400 -0.0004 26 1 3.8751 -0.6804 0.8889 27 1 3.8746 -0.6800 -0.8911 28 1 3.6579 -3.1504 -0.8908 29 1 3.6586 -3.1501 0.8892 30 1 5.8247 -4.8732 -0.8918 31 1 5.8247 -4.8740 0.8882 32 1 7.8847 -4.5906 2.1310 33 1 7.8897 -4.5995 -2.1357 34 1 10.4199 -6.9451 -2.3154 35 1 11.2028 -6.2449 -3.7489 36 1 12.8982 -7.2205 -2.3226 37 1 13.0667 -5.4552 -2.3027 38 1 11.6463 -7.0851 -0.1705 39 1 13.3152 -6.4857 -0.0532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571587734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:45 Heat of formation + Delta-G solvation = -67.408831 kcal Electronic energy + Delta-G solvation = -22354.537477 eV Core-core repulsion = 18800.548294 eV Total energy + Delta-G solvation = -3553.989183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26331 -38.41414 -37.90353 -36.63857 -33.73972 -33.67096 -31.73613 -31.25321 -30.33366 -27.51060 -26.44888 -25.44610 -23.31916 -22.03974 -21.86268 -20.69379 -18.80216 -17.58632 -17.34473 -16.98893 -16.07247 -15.81779 -15.69587 -15.44926 -14.78078 -14.61445 -14.48676 -14.37468 -14.07553 -13.70712 -13.52266 -13.02755 -12.86503 -12.77589 -12.63422 -12.29863 -11.76302 -11.72600 -11.52372 -11.26418 -11.16858 -11.16524 -10.81729 -10.37583 -10.32303 -10.06595 -9.99729 -9.59074 -9.20668 -8.97394 -8.68036 -8.60686 -7.32790 -6.11731 -4.11943 0.51834 0.71162 1.78377 2.02919 2.92036 3.05195 3.07278 3.30125 3.37545 3.42921 3.43142 4.17858 4.24315 4.36286 4.40868 4.63935 4.67989 4.73659 4.81495 4.84095 4.86571 4.88917 5.16263 5.22426 5.26609 5.37136 5.43868 5.53645 5.58572 5.79221 5.84178 5.95943 6.05258 6.09277 6.50616 6.69527 7.09444 7.13021 7.21534 7.64554 8.41299 8.89602 9.49011 11.00883 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.002445 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.122806 B =11450.203109 C =12092.805154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.054 4.054 11 S -0.275 6.275 12 C -0.052 4.052 13 C -0.040 4.040 14 C -0.087 4.087 15 C -0.033 4.033 16 Cl -0.050 7.050 17 C 0.072 3.928 18 C 0.079 3.921 19 C -0.095 4.095 20 O -0.312 6.312 21 C 0.058 3.942 22 C -0.188 4.188 23 C 0.059 3.941 24 O -0.308 6.308 25 H 0.265 0.735 26 H 0.026 0.974 27 H 0.022 0.978 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.733 -17.697 -1.565 31.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.201 4.201 11 S -0.045 6.045 12 C -0.200 4.200 13 C -0.042 4.042 14 C -0.108 4.108 15 C -0.061 4.061 16 Cl -0.021 7.021 17 C 0.026 3.974 18 C 0.035 3.965 19 C -0.115 4.115 20 O -0.229 6.229 21 C -0.017 4.017 22 C -0.226 4.226 23 C -0.016 4.016 24 O -0.224 6.224 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 26.488 -16.458 -1.510 31.221 hybrid contribution -0.426 -0.420 0.087 0.605 sum 26.062 -16.878 -1.423 31.083 Atomic orbital electron populations 1.69894 1.06275 1.27147 1.50443 1.24964 0.94746 0.99194 0.94210 0.86789 0.80502 0.83418 0.78786 1.20065 1.21193 1.18736 1.20948 0.88425 0.94742 1.51966 0.90818 1.19366 0.97118 0.89527 0.97623 1.23524 0.87870 1.04642 1.04098 1.87205 1.12590 1.06641 1.98091 1.22225 0.93394 0.98202 1.06142 1.19118 0.94420 0.98656 0.92010 1.20951 0.91206 0.99368 0.99270 1.20813 0.92189 1.06473 0.86580 1.98375 1.77180 1.96515 1.30004 1.18795 0.84179 1.03460 0.90973 1.18845 0.90437 1.02543 0.84710 1.21103 0.91657 0.99650 0.99119 1.86425 1.68646 1.32707 1.35085 1.22677 0.93311 0.84429 1.01239 1.22489 0.99231 1.04417 0.96429 1.22657 1.00615 0.84538 0.93744 1.86423 1.16061 1.35469 1.84437 0.92513 0.95535 0.95980 0.90658 0.90622 0.88823 0.88797 0.83618 0.83726 0.92290 0.87576 0.89055 0.89628 0.92391 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.06 4.05 -27.88 -0.11 -0.05 16 10 C -0.05 -1.03 5.88 37.16 0.22 -0.82 16 11 S -0.28 -4.64 21.72 -107.50 -2.33 -6.97 16 12 C -0.05 -0.63 6.06 36.01 0.22 -0.41 16 13 C -0.04 -0.47 5.14 -104.58 -0.54 -1.00 16 14 C -0.09 -0.98 9.48 -39.50 -0.37 -1.36 16 15 C -0.03 -0.38 6.33 -39.39 -0.25 -0.63 16 16 Cl -0.05 -0.54 28.53 -51.86 -1.48 -2.02 16 17 C 0.07 0.85 5.72 -39.29 -0.22 0.63 16 18 C 0.08 0.93 5.73 -39.31 -0.23 0.71 16 19 C -0.10 -1.08 9.65 -39.46 -0.38 -1.46 16 20 O -0.31 -3.50 10.16 -36.68 -0.37 -3.87 16 21 C 0.06 0.41 6.51 36.68 0.24 0.65 16 22 C -0.19 -1.11 5.93 -27.68 -0.16 -1.28 16 23 C 0.06 0.43 6.51 36.69 0.24 0.67 16 24 O -0.31 -3.47 9.64 -36.78 -0.35 -3.82 16 25 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 27 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 28 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.09 1.01 8.08 -51.92 -0.42 0.59 16 31 H 0.09 1.01 8.08 -51.92 -0.42 0.59 16 32 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.06 0.36 7.93 -51.93 -0.41 -0.05 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.38 7.93 -51.93 -0.41 -0.03 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -31.94 352.43 -10.31 -42.25 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -5.40 Total: -4.03 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -1.79 Total: -17.32 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.77 Total: -26.57 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.73 Total: -7.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -2.33 Total: -6.97 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.94 -10.31 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571587734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.156 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds