Wall clock time and date at job start Tue Mar 31 2020 15:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47466 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.46914 * 30.00417 * 3 2 1 6 6 H 1.48507 * 109.46739 * 150.00133 * 3 2 1 7 7 C 1.37880 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00025 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99753 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46827 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.46960 * 180.02562 * 10 9 7 12 12 C 1.81408 * 102.99810 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46846 * 180.02562 * 12 11 10 14 14 C 1.38254 * 119.88794 * 90.00165 * 13 12 11 15 15 C 1.38443 * 120.20752 * 179.97438 * 14 13 12 16 16 Cl 1.73598 * 120.15173 * 180.02562 * 15 14 13 17 17 C 1.38562 * 119.69077 * 0.02562 * 15 14 13 18 18 C 1.38709 * 120.05804 * 359.97438 * 17 15 14 19 19 C 1.38325 * 119.89093 * 269.72246 * 13 12 11 20 20 O 1.36460 * 119.61632 * 179.97438 * 18 17 15 21 21 C 1.42903 * 115.92459 * 68.29918 * 20 18 17 22 22 C 1.52066 * 110.76580 * 275.57665 * 21 20 18 23 23 C 1.52072 * 112.37029 * 64.80873 * 22 21 20 24 24 O 1.36492 * 120.32424 * 179.97438 * 17 15 14 25 25 H 0.97003 * 120.00374 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46758 * 60.00594 * 9 7 2 27 27 H 1.08997 * 109.47547 * 299.99923 * 9 7 2 28 28 H 1.09005 * 109.46565 * 60.00353 * 10 9 7 29 29 H 1.08997 * 109.47094 * 300.00322 * 10 9 7 30 30 H 1.09000 * 109.46602 * 60.00357 * 12 11 10 31 31 H 1.09000 * 109.47286 * 300.00088 * 12 11 10 32 32 H 1.07998 * 119.89856 * 359.96363 * 14 13 12 33 33 H 1.08008 * 120.13069 * 0.02562 * 19 13 12 34 34 H 1.09000 * 109.21761 * 35.91343 * 21 20 18 35 35 H 1.09001 * 109.22359 * 155.29152 * 21 20 18 36 36 H 1.09001 * 108.90094 * 185.54923 * 22 21 20 37 37 H 1.08998 * 108.90583 * 304.15907 * 22 21 20 38 38 H 1.08995 * 109.21809 * 55.52627 * 23 22 21 39 39 H 1.09002 * 109.21105 * 174.90526 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 16 5.8355 -2.6364 -0.0009 12 6 6.2436 -4.4040 -0.0016 13 6 7.7411 -4.5738 -0.0010 14 6 8.4251 -4.6520 1.1980 15 6 9.8006 -4.8085 1.2063 16 17 10.6579 -4.9072 2.7126 17 6 10.4898 -4.8859 0.0067 18 6 9.8026 -4.8073 -1.1956 19 6 8.4260 -4.6566 -1.1999 20 8 10.4905 -4.8841 -2.3717 21 6 11.0783 -6.1520 -2.6701 22 6 12.4349 -6.2891 -1.9970 23 6 12.3304 -6.2950 -0.4799 24 8 11.8460 -5.0397 -0.0002 25 1 -0.4851 0.8400 -0.0004 26 1 3.8751 -0.6804 0.8889 27 1 3.8746 -0.6800 -0.8911 28 1 3.6579 -3.1504 -0.8908 29 1 3.6586 -3.1501 0.8892 30 1 5.8247 -4.8732 -0.8918 31 1 5.8247 -4.8740 0.8882 32 1 7.8847 -4.5906 2.1310 33 1 7.8897 -4.5995 -2.1357 34 1 10.4199 -6.9451 -2.3154 35 1 11.2028 -6.2449 -3.7489 36 1 12.8982 -7.2205 -2.3226 37 1 13.0667 -5.4552 -2.3027 38 1 11.6463 -7.0851 -0.1705 39 1 13.3152 -6.4857 -0.0532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571587734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:44 Heat of formation + Delta-G solvation = -84.486558 kcal Electronic energy + Delta-G solvation = -22355.278023 eV Core-core repulsion = 18800.548294 eV Total energy + Delta-G solvation = -3554.729729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.02798 -39.19791 -38.65978 -37.47240 -35.74120 -34.32158 -33.26485 -32.55479 -31.14456 -28.32638 -27.58383 -26.93965 -24.12953 -23.03456 -22.62616 -22.25949 -19.53201 -19.12691 -18.35381 -18.13657 -17.09409 -16.66061 -16.46793 -16.41103 -16.28199 -15.72809 -15.57375 -15.26790 -15.16377 -14.90207 -14.73693 -14.21868 -14.00979 -13.72705 -13.69541 -13.54785 -13.11409 -12.97754 -12.50198 -12.35690 -12.13916 -12.05535 -11.88799 -11.85043 -11.71390 -11.47990 -11.41478 -11.07487 -10.83165 -10.79793 -9.81238 -9.56217 -8.64304 -8.32845 -6.37761 -0.37934 -0.12509 0.83174 0.98124 1.35568 1.37319 1.49349 1.67898 2.19453 2.33851 2.37094 2.61097 3.02548 3.44203 3.69394 3.72734 3.89484 3.93451 4.03298 4.04877 4.19491 4.25575 4.29532 4.34179 4.35039 4.49074 4.54800 4.73645 4.77911 4.79097 4.82535 4.96827 5.07889 5.20064 5.21383 5.25430 5.32779 5.54772 6.01266 6.20052 6.37885 6.68241 7.26866 8.83005 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.002445 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.122806 B =11450.203109 C =12092.805154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.529 4.529 8 H 0.042 0.958 9 C 0.006 3.994 10 C -0.048 4.048 11 S -0.299 6.299 12 C -0.036 4.036 13 C -0.048 4.048 14 C -0.087 4.087 15 C -0.044 4.044 16 Cl -0.047 7.047 17 C 0.070 3.930 18 C 0.072 3.928 19 C -0.096 4.096 20 O -0.333 6.333 21 C 0.048 3.952 22 C -0.183 4.183 23 C 0.049 3.951 24 O -0.329 6.329 25 H 0.268 0.732 26 H 0.022 0.978 27 H 0.021 0.979 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.025 -18.542 -1.924 33.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.061 0.939 9 C -0.032 4.032 10 C -0.196 4.196 11 S -0.069 6.069 12 C -0.183 4.183 13 C -0.050 4.050 14 C -0.107 4.107 15 C -0.072 4.072 16 Cl -0.018 7.018 17 C 0.024 3.976 18 C 0.027 3.973 19 C -0.116 4.116 20 O -0.250 6.250 21 C -0.026 4.026 22 C -0.220 4.220 23 C -0.024 4.024 24 O -0.245 6.245 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.174 0.826 33 H 0.171 0.829 34 H 0.086 0.914 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 28.788 -17.317 -1.872 33.647 hybrid contribution -1.007 -0.335 0.167 1.074 sum 27.782 -17.652 -1.705 32.959 Atomic orbital electron populations 1.70029 1.08038 1.28298 1.52087 1.25880 0.95564 1.03164 0.93984 0.85748 0.79446 0.78778 0.79300 1.19117 1.20606 1.17599 1.21282 0.90909 0.93585 1.51043 0.93948 1.19211 0.94305 0.92585 0.97124 1.23192 0.90324 1.01676 1.04438 1.87194 1.09657 1.11806 1.98220 1.22270 0.93885 0.94168 1.07935 1.19046 0.93999 0.99725 0.92236 1.21088 0.91208 0.98759 0.99653 1.20904 0.92443 1.07052 0.86777 1.98371 1.77162 1.96537 1.29744 1.18950 0.84598 1.02962 0.91118 1.18948 0.90669 1.02662 0.85009 1.21235 0.91742 0.99170 0.99443 1.86384 1.68912 1.34967 1.34783 1.23008 0.93800 0.83086 1.02696 1.22473 0.98556 1.05644 0.95340 1.22976 1.01511 0.83141 0.94818 1.86377 1.15708 1.37529 1.84928 0.92271 0.95962 0.96097 0.90354 0.90354 0.87117 0.87081 0.82634 0.82906 0.91421 0.85567 0.85795 0.90683 0.91756 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 2 C 0.01 0.70 5.47 84.66 0.46 1.17 16 3 Si 0.94 44.71 27.47 68.60 1.88 46.60 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 7 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 8 H 0.04 2.60 7.99 -2.91 -0.02 2.57 16 9 C 0.01 0.30 4.05 29.85 0.12 0.42 16 10 C -0.05 -1.83 5.88 71.98 0.42 -1.41 16 11 S -0.30 -9.60 21.72 -56.49 -1.23 -10.83 16 12 C -0.04 -0.78 6.06 71.24 0.43 -0.34 16 13 C -0.05 -1.02 5.14 -19.84 -0.10 -1.13 16 14 C -0.09 -1.81 9.48 22.32 0.21 -1.60 16 15 C -0.04 -0.98 6.33 22.40 0.14 -0.83 16 16 Cl -0.05 -0.97 28.53 -2.72 -0.08 -1.05 16 17 C 0.07 1.58 5.72 22.46 0.13 1.71 16 18 C 0.07 1.59 5.73 22.44 0.13 1.72 16 19 C -0.10 -2.02 9.65 22.35 0.22 -1.81 16 20 O -0.33 -7.03 10.16 -84.07 -0.85 -7.88 16 21 C 0.05 0.57 6.51 71.67 0.47 1.04 16 22 C -0.18 -1.73 5.93 29.98 0.18 -1.55 16 23 C 0.05 0.62 6.51 71.68 0.47 1.08 16 24 O -0.33 -7.02 9.64 -84.44 -0.81 -7.83 16 25 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 26 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 27 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 28 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.11 2.08 8.08 -2.39 -0.02 2.06 16 31 H 0.11 2.08 8.08 -2.39 -0.02 2.06 16 32 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.07 0.69 7.93 -2.39 -0.02 0.67 16 35 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.71 7.93 -2.39 -0.02 0.70 16 39 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.43 352.43 3.73 -65.70 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.00 Total: 4.90 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 3.52 Total: -31.34 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.30 Total: -58.26 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.67 Total: -15.72 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.60 kcal Atomic # 16 Polarization: -9.60 SS G_CDS: -1.23 Total: -10.83 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -69.43 3.73 -65.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571587734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.787 kcal (2) G-P(sol) polarization free energy of solvation -69.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds