Wall clock time and date at job start Tue Mar 31 2020 15:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48498 * 109.47173 * 270.00234 * 3 2 1 5 5 H 1.48500 * 109.46839 * 30.00053 * 3 2 1 6 6 H 1.48498 * 109.47279 * 149.99893 * 3 2 1 7 7 C 1.37871 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00380 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47305 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47003 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47054 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99772 * 179.97438 * 12 11 10 14 14 O 1.21580 * 120.00355 * 359.97438 * 13 12 11 15 15 C 1.47541 * 119.99666 * 179.97438 * 13 12 11 16 16 C 1.39718 * 120.18783 * 0.32163 * 15 13 12 17 17 C 1.37885 * 119.89330 * 180.29862 * 16 15 13 18 18 Cl 1.73601 * 119.86345 * 179.69883 * 17 16 15 19 19 C 1.38646 * 120.27363 * 359.67716 * 17 16 15 20 20 C 1.38053 * 120.37982 * 359.97438 * 19 17 16 21 21 N 1.48018 * 119.95191 * 180.02562 * 20 19 17 22 22 O 1.21796 * 119.99965 * 359.97438 * 21 20 19 23 23 O 1.21800 * 119.99740 * 179.97438 * 21 20 19 24 24 C 1.38699 * 120.09775 * 0.02681 * 20 19 17 25 25 O 1.35668 * 120.13734 * 180.02562 * 24 20 19 26 26 H 0.96997 * 119.99990 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47197 * 59.99508 * 9 7 2 28 28 H 1.09000 * 109.46609 * 299.99814 * 9 7 2 29 29 H 1.08995 * 109.47202 * 59.99960 * 10 9 7 30 30 H 1.09000 * 109.47242 * 299.99557 * 10 9 7 31 31 H 1.08995 * 109.47285 * 59.99876 * 11 10 9 32 32 H 1.09000 * 109.46649 * 299.99784 * 11 10 9 33 33 H 0.97001 * 120.00181 * 359.97438 * 12 11 10 34 34 H 1.07997 * 120.04969 * 0.02562 * 16 15 13 35 35 H 1.08007 * 119.81296 * 180.02562 * 19 17 16 36 36 H 0.96700 * 114.00436 * 89.99846 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5517 -2.6364 0.0012 12 7 6.0400 -4.0176 0.0004 13 6 7.3652 -4.2638 0.0008 14 8 8.1552 -3.3396 0.0012 15 6 7.8570 -5.6548 0.0006 16 6 6.9526 -6.7197 -0.0067 17 6 7.4188 -8.0173 -0.0006 18 17 6.2943 -9.3399 -0.0018 19 6 8.7820 -8.2702 0.0060 20 6 9.6857 -7.2265 0.0060 21 7 11.1390 -7.5074 0.0126 22 8 11.5367 -8.6585 0.0184 23 8 11.9370 -6.5872 0.0121 24 6 9.2338 -5.9152 0.0000 25 8 10.1212 -4.8890 -0.0006 26 1 -0.4850 0.8400 0.0004 27 1 3.8746 -0.6807 0.8905 28 1 3.8752 -0.6796 -0.8895 29 1 3.6587 -3.1501 -0.8903 30 1 3.6580 -3.1505 0.8897 31 1 5.9143 -2.1229 0.8916 32 1 5.9156 -2.1222 -0.8884 33 1 5.4097 -4.7549 -0.0003 34 1 5.8900 -6.5268 -0.0127 35 1 9.1390 -9.2895 0.0104 36 1 10.3815 -4.5945 -0.8841 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572289038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:15 Heat of formation + Delta-G solvation = -64.783205 kcal Electronic energy + Delta-G solvation = -24407.194548 eV Core-core repulsion = 20307.026006 eV Total energy + Delta-G solvation = -4100.168542 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.70283 -41.08751 -39.17967 -38.14986 -37.06457 -36.69519 -35.75932 -33.72275 -32.86134 -31.50449 -30.86870 -27.56484 -27.08826 -24.91300 -23.26896 -22.81555 -21.27920 -20.63413 -19.68112 -19.17710 -18.93705 -17.98891 -17.61215 -17.22491 -16.78355 -16.51170 -15.97218 -15.68662 -15.45171 -14.61316 -14.35049 -14.05824 -13.97303 -13.70843 -13.43977 -12.79683 -12.28036 -12.17673 -12.11146 -12.05575 -11.95254 -11.82508 -11.49694 -11.38458 -11.22052 -10.99820 -10.47361 -10.46125 -10.14354 -9.93902 -9.78234 -9.65364 -9.32836 -9.17829 -8.63510 -6.14143 -4.13715 -0.86544 -0.31219 0.62397 0.69197 1.23766 1.94096 2.68494 2.83717 3.06928 3.25020 3.33386 3.36344 3.66839 3.80878 3.83728 4.04486 4.36988 4.40817 4.59375 4.79696 4.93620 5.10556 5.19674 5.35719 5.46215 5.82169 5.86409 6.03126 6.26993 6.45140 6.62679 6.85418 7.10229 7.20371 7.20638 7.23932 7.66655 7.86217 8.41000 8.88872 9.47706 10.98941 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.002460 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.051241 B =11377.553844 C =12905.208826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.115 4.115 11 C 0.114 3.886 12 N -0.716 5.716 13 C 0.555 3.445 14 O -0.510 6.510 15 C -0.148 4.148 16 C -0.013 4.013 17 C -0.057 4.057 18 Cl -0.025 7.025 19 C -0.013 4.013 20 C -0.077 4.077 21 N 0.032 4.968 22 O -0.163 6.163 23 O -0.126 6.126 24 C 0.244 3.756 25 O -0.446 6.446 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.398 0.602 34 H 0.163 0.837 35 H 0.172 0.828 36 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.472 -19.531 -1.757 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.008 4.008 12 N -0.367 5.367 13 C 0.340 3.660 14 O -0.386 6.386 15 C -0.153 4.153 16 C -0.033 4.033 17 C -0.085 4.085 18 Cl 0.004 6.996 19 C -0.033 4.033 20 C -0.161 4.161 21 N 0.554 4.446 22 O -0.376 6.376 23 O -0.348 6.348 24 C 0.194 3.806 25 O -0.259 6.259 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.234 0.766 34 H 0.180 0.820 35 H 0.189 0.811 36 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 17.026 -18.743 -1.175 25.349 hybrid contribution 0.221 0.297 -0.448 0.581 sum 17.248 -18.446 -1.623 25.305 Atomic orbital electron populations 1.69906 1.06331 1.27061 1.50712 1.25029 0.94756 0.99272 0.94381 0.86777 0.80394 0.83514 0.78610 1.20220 1.21317 1.18893 1.21062 0.89207 0.94530 1.51446 0.91004 1.19499 0.97383 0.91208 0.96770 1.21736 0.90215 1.01402 1.01897 1.21790 0.96463 0.80045 1.02529 1.46100 1.05832 1.10757 1.74040 1.17551 0.83284 0.86795 0.78399 1.90876 1.54946 1.44391 1.48354 1.20494 0.91894 0.95456 1.07458 1.21675 1.01617 0.89651 0.90326 1.20464 0.90285 0.90339 1.07413 1.98450 1.59367 1.45044 1.96765 1.20944 0.90391 1.00556 0.91388 1.21396 0.81902 0.94814 1.18010 1.43196 1.02373 1.00854 0.98178 1.94565 1.82681 1.06276 1.54035 1.94624 1.50293 1.38115 1.51744 1.18114 0.88422 0.85296 0.88722 1.84778 1.59300 1.47702 1.34167 0.92612 0.96226 0.96668 0.91958 0.91930 0.91164 0.91198 0.76642 0.82005 0.81092 0.72292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -14.13 9.66 -34.44 -0.33 -14.46 16 8 H 0.07 2.06 7.99 -52.48 -0.42 1.65 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 10 C -0.11 -1.90 5.27 -26.73 -0.14 -2.04 16 11 C 0.11 1.61 5.67 -4.04 -0.02 1.59 16 12 N -0.72 -7.89 5.51 -61.35 -0.34 -8.22 16 13 C 0.56 6.54 7.76 -12.47 -0.10 6.44 16 14 O -0.51 -7.81 15.16 -16.59 -0.25 -8.06 16 15 C -0.15 -1.31 5.89 -104.84 -0.62 -1.93 16 16 C -0.01 -0.08 9.31 -39.16 -0.36 -0.45 16 17 C -0.06 -0.35 6.31 -39.56 -0.25 -0.60 16 18 Cl -0.03 -0.15 28.94 -51.86 -1.50 -1.65 16 19 C -0.01 -0.09 9.32 -39.50 -0.37 -0.45 16 20 C -0.08 -0.68 6.86 -79.84 -0.55 -1.23 16 21 N 0.03 0.35 4.45 34.01 0.15 0.50 16 22 O -0.16 -1.81 18.44 -29.46 -0.54 -2.35 16 23 O -0.13 -1.50 17.24 -36.50 -0.63 -2.12 16 24 C 0.24 2.30 6.70 -38.70 -0.26 2.04 16 25 O -0.45 -4.61 9.58 -49.73 -0.48 -5.09 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 28 H 0.02 0.33 7.57 -51.93 -0.39 -0.07 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.40 3.20 6.50 -40.82 -0.27 2.94 16 34 H 0.16 0.66 6.40 -52.49 -0.34 0.33 16 35 H 0.17 0.88 7.59 -52.48 -0.40 0.48 16 36 H 0.41 2.75 9.06 45.56 0.41 3.16 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -33.35 336.96 -8.25 -41.60 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -2.63 Total: -0.21 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -3.21 Total: -9.63 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.59 Total: -33.91 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -1.90 Total: -17.62 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.50 Total: -1.65 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.35 -8.25 -41.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572289038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.187 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds