Wall clock time and date at job start Tue Mar 31 2020 15:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48498 * 109.47173 * 270.00234 * 3 2 1 5 5 H 1.48500 * 109.46839 * 30.00053 * 3 2 1 6 6 H 1.48498 * 109.47279 * 149.99893 * 3 2 1 7 7 C 1.37871 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00380 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47305 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47003 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47054 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99772 * 179.97438 * 12 11 10 14 14 O 1.21580 * 120.00355 * 359.97438 * 13 12 11 15 15 C 1.47541 * 119.99666 * 179.97438 * 13 12 11 16 16 C 1.39718 * 120.18783 * 0.32163 * 15 13 12 17 17 C 1.37885 * 119.89330 * 180.29862 * 16 15 13 18 18 Cl 1.73601 * 119.86345 * 179.69883 * 17 16 15 19 19 C 1.38646 * 120.27363 * 359.67716 * 17 16 15 20 20 C 1.38053 * 120.37982 * 359.97438 * 19 17 16 21 21 N 1.48018 * 119.95191 * 180.02562 * 20 19 17 22 22 O 1.21796 * 119.99965 * 359.97438 * 21 20 19 23 23 O 1.21800 * 119.99740 * 179.97438 * 21 20 19 24 24 C 1.38699 * 120.09775 * 0.02681 * 20 19 17 25 25 O 1.35668 * 120.13734 * 180.02562 * 24 20 19 26 26 H 0.96997 * 119.99990 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47197 * 59.99508 * 9 7 2 28 28 H 1.09000 * 109.46609 * 299.99814 * 9 7 2 29 29 H 1.08995 * 109.47202 * 59.99960 * 10 9 7 30 30 H 1.09000 * 109.47242 * 299.99557 * 10 9 7 31 31 H 1.08995 * 109.47285 * 59.99876 * 11 10 9 32 32 H 1.09000 * 109.46649 * 299.99784 * 11 10 9 33 33 H 0.97001 * 120.00181 * 359.97438 * 12 11 10 34 34 H 1.07997 * 120.04969 * 0.02562 * 16 15 13 35 35 H 1.08007 * 119.81296 * 180.02562 * 19 17 16 36 36 H 0.96700 * 114.00436 * 89.99846 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5517 -2.6364 0.0012 12 7 6.0400 -4.0176 0.0004 13 6 7.3652 -4.2638 0.0008 14 8 8.1552 -3.3396 0.0012 15 6 7.8570 -5.6548 0.0006 16 6 6.9526 -6.7197 -0.0067 17 6 7.4188 -8.0173 -0.0006 18 17 6.2943 -9.3399 -0.0018 19 6 8.7820 -8.2702 0.0060 20 6 9.6857 -7.2265 0.0060 21 7 11.1390 -7.5074 0.0126 22 8 11.5367 -8.6585 0.0184 23 8 11.9370 -6.5872 0.0121 24 6 9.2338 -5.9152 0.0000 25 8 10.1212 -4.8890 -0.0006 26 1 -0.4850 0.8400 0.0004 27 1 3.8746 -0.6807 0.8905 28 1 3.8752 -0.6796 -0.8895 29 1 3.6587 -3.1501 -0.8903 30 1 3.6580 -3.1505 0.8897 31 1 5.9143 -2.1229 0.8916 32 1 5.9156 -2.1222 -0.8884 33 1 5.4097 -4.7549 -0.0003 34 1 5.8900 -6.5268 -0.0127 35 1 9.1390 -9.2895 0.0104 36 1 10.3815 -4.5945 -0.8841 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572289038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:14 Heat of formation + Delta-G solvation = -86.458178 kcal Electronic energy + Delta-G solvation = -24408.134445 eV Core-core repulsion = 20307.026006 eV Total energy + Delta-G solvation = -4101.108440 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.47233 -41.86022 -40.05065 -38.79627 -37.74524 -37.38870 -37.00175 -35.24358 -33.96989 -32.94277 -31.58283 -29.08027 -27.83177 -25.94616 -24.28869 -23.82661 -22.33146 -21.92215 -20.58198 -19.97825 -19.64246 -18.99807 -18.75300 -18.28709 -17.86215 -17.24414 -16.82985 -16.70903 -16.36724 -16.15446 -15.50964 -15.18417 -14.77267 -14.73863 -14.26319 -14.16374 -13.80215 -13.65812 -12.90651 -12.80859 -12.75606 -12.72365 -12.68238 -12.35637 -12.34150 -12.16215 -11.92719 -11.78900 -11.58869 -11.32195 -11.13765 -11.11205 -10.75285 -10.31126 -10.13075 -8.28580 -6.32206 -1.55583 -0.95396 -0.11494 -0.00028 0.69340 1.23937 1.37491 1.39895 1.50570 1.81247 2.04922 2.36820 2.40275 3.00858 3.07737 3.21483 3.26531 3.41168 3.73032 4.01180 4.06773 4.20374 4.21336 4.38333 4.50252 4.53913 4.88317 4.89535 5.05026 5.07796 5.26228 5.49523 5.57405 5.66252 6.26168 6.28111 6.33901 6.35133 6.76626 6.98564 7.32917 8.87653 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.002460 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.051241 B =11377.553844 C =12905.208826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.528 4.528 8 H 0.039 0.961 9 C -0.014 4.014 10 C -0.102 4.102 11 C 0.127 3.873 12 N -0.706 5.706 13 C 0.559 3.441 14 O -0.549 6.549 15 C -0.156 4.156 16 C 0.008 3.992 17 C -0.052 4.052 18 Cl -0.014 7.014 19 C 0.003 3.997 20 C -0.085 4.085 21 N 0.034 4.966 22 O -0.161 6.161 23 O -0.161 6.161 24 C 0.241 3.759 25 O -0.466 6.466 26 H 0.265 0.735 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.415 0.585 34 H 0.188 0.812 35 H 0.189 0.811 36 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.078 -20.704 -1.858 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.170 1.170 7 C -0.566 4.566 8 H 0.058 0.942 9 C -0.052 4.052 10 C -0.140 4.140 11 C 0.004 3.996 12 N -0.358 5.358 13 C 0.345 3.655 14 O -0.428 6.428 15 C -0.161 4.161 16 C -0.012 4.012 17 C -0.080 4.080 18 Cl 0.016 6.984 19 C -0.017 4.017 20 C -0.170 4.170 21 N 0.552 4.448 22 O -0.377 6.377 23 O -0.376 6.376 24 C 0.191 3.809 25 O -0.281 6.281 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.253 0.747 34 H 0.205 0.795 35 H 0.207 0.793 36 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 17.663 -19.912 -1.285 26.648 hybrid contribution -0.077 0.482 -0.423 0.646 sum 17.586 -19.430 -1.708 26.262 Atomic orbital electron populations 1.70056 1.08233 1.28065 1.52821 1.25974 0.95547 1.03404 0.94369 0.85729 0.79578 0.78656 0.79129 1.19302 1.21390 1.16978 1.21475 0.91972 0.93208 1.49986 0.94223 1.19476 0.93985 0.94836 0.96882 1.21504 0.91820 0.98124 1.02557 1.21403 0.94494 0.81689 1.02057 1.45844 1.06129 1.10093 1.73756 1.17821 0.82875 0.87554 0.77254 1.90861 1.55878 1.45897 1.50177 1.20118 0.91864 0.94418 1.09672 1.21893 1.02407 0.88967 0.87899 1.20413 0.90131 0.90551 1.06880 1.98469 1.58841 1.44453 1.96662 1.21172 0.90318 1.00800 0.89372 1.21353 0.80747 0.95177 1.19743 1.43420 1.03179 1.00556 0.97619 1.94538 1.83260 1.06370 1.53485 1.94629 1.51238 1.38197 1.53515 1.18236 0.88600 0.85315 0.88730 1.84733 1.59744 1.48230 1.35403 0.92594 0.96144 0.96091 0.91215 0.91454 0.92004 0.91542 0.74722 0.79473 0.79339 0.71047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 42.87 27.47 68.60 1.88 44.76 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -10.35 6.54 99.48 0.65 -9.70 16 7 C -0.53 -28.51 9.66 25.60 0.25 -28.27 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.10 -3.19 5.27 30.60 0.16 -3.03 16 11 C 0.13 3.34 5.67 86.38 0.49 3.83 16 12 N -0.71 -13.86 5.51 -466.27 -2.57 -16.43 16 13 C 0.56 12.25 7.76 86.70 0.67 12.93 16 14 O -0.55 -16.48 15.16 16.96 0.26 -16.22 16 15 C -0.16 -2.45 5.89 -20.01 -0.12 -2.57 16 16 C 0.01 0.07 9.31 22.54 0.21 0.28 16 17 C -0.05 -0.46 6.31 22.28 0.14 -0.32 16 18 Cl -0.01 -0.11 28.94 -2.72 -0.08 -0.19 16 19 C 0.00 0.03 9.32 22.32 0.21 0.24 16 20 C -0.09 -1.39 6.86 36.44 0.25 -1.14 16 21 N 0.03 0.72 4.45 -46.30 -0.21 0.52 16 22 O -0.16 -3.41 18.44 18.89 0.35 -3.06 16 23 O -0.16 -3.90 17.24 25.61 0.44 -3.46 16 24 C 0.24 4.29 6.70 22.84 0.15 4.44 16 25 O -0.47 -9.69 9.58 -60.18 -0.58 -10.27 16 26 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 27 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 28 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.41 5.31 6.50 -92.71 -0.60 4.71 16 34 H 0.19 0.74 6.40 -2.91 -0.02 0.73 16 35 H 0.19 1.35 7.59 -2.91 -0.02 1.33 16 36 H 0.42 5.91 9.06 -74.06 -0.67 5.24 16 Total: -1.00 -72.99 336.96 2.64 -70.34 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -0.16 Total: 5.00 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 3.00 Total: -13.38 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -2.47 Total: -73.53 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: 0.47 Total: -33.01 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.76 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal Total: -72.99 2.64 -70.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572289038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.117 kcal (2) G-P(sol) polarization free energy of solvation -72.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds